BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63190.1
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939414 jgi|Araly1|939414|scaffold_503605.1 1426 0.0
Ahg932672 jgi|Araly1|932672|scaffold_400660.1 211 9e-54
> Ahg939414 jgi|Araly1|939414|scaffold_503605.1
Length=871
Score = 1426 bits (772), Expect = 0.0
Identities = 838/871 (96%), Gaps = 0/871 (0%)
Strand=Plus/Plus
Query 112 CTTCACTTCTACGGCTACTGCCATGGCGGCTTCTTTCTCTTCCACTGCTCCCACGACACC 171
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1 CTTCACCTCTACGGCTACTGCCATGGCTGCTTCATTCTCTTCCACTGCTCCCACGACTCC 60
Query 172 GGTTCTTCGATTCAGAGCCAACTACTCCAAGCCTCTCCTCTCTCTCCCAGATTCGTGTTT 231
|||||||| ||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 61 GGTTCTTCAATTCAGAGCGAACTACTCCAAGTCTTTCCTCTCTCTCCCAGATTCGTGTTT 120
Query 232 GAGGATAATCTCTTCGGCGATATCTCCCTCTACACGCTTAATTGCGTGTTCGTTCAAGAC 291
|||||||||| ||||||||| || ||||||| |||||||||||||||||||||| |||||
Sbjct 121 GAGGATAATCGCTTCGGCGAGATGTCCCTCTGCACGCTTAATTGCGTGTTCGTTAAAGAC 180
Query 292 AGACAAGCTTCCGCTCGGTGCCGGCGTCAATCTCTCCGGTGGCCCCGTTGTCAAGCGCTC 351
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 181 CGACAAGCTTCCGCTCGGTGCCGGCGTCAGTCTCTCCCGTGGCCCCGTTGTCAAGCGGTC 240
Query 352 TCTACAGAAGAGATTGGTGATAAGGTCTGCTACTATTGAAGAAATAGAAGCAGAGAAGTC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTACAGAAGAGATTGGTGATAAGGTCTGCTACTATTGAAGAAATAGAAGCAGAGAAGTC 300
Query 412 TGCTATTGAGACTGATGTTAAATCAAAGATGGAGAAGACTATTGAAACGCTTCGGACGAG 471
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TGCTATTGAGACTGATGTTAAATCAAAGATGGAGAAGACCATTGAAACGCTTCGGACGAG 360
Query 472 TTTCAACTCCATAAGGACTGGGAGATCCAATGCAGCGATGCTTGACAAGATTGAGGTGGA 531
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 361 TTTCAACTCCATAAGGACTGGGAGATCCAATGCGGCAATGCTTGACAAGATTGAGGTGGA 420
Query 532 ATACTATGGAAGTCCAGTAAGTTTGAAAAGCATAGCCCAAATCAGTACTCCGGATGGAAG 591
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct 421 ATACTATGGAAGTCCAGTAAGTTTGAAAAGCATTGCCCAAATCAGTACCCCCGATGGGAG 480
Query 592 TTCTCTTTTGCTGCAACCATATGACAAATCCAGCTTGAAGGCTATAGAGAAAGCCATTGT 651
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 481 TTCTCTTTTGCTGCAACCATATGACAAATCCAGCTTGAAGGCTATAGAGAAGGCTATTGT 540
Query 652 GAATTCTGATCTTGGTGTGACCCCTAATAACGATGGAGATGTTATTCGACTGTCCTTGCC 711
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 GAATTCTGATCTTGGAGTGACCCCTAATAACGATGGAGATGTCATTCGACTGTCCTTGCC 600
Query 712 TCCCCTCACATCTGACAGAAGAAAGGAACTATCAAAGGTTGTTGCTAAACAGTCTGAAGA 771
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 TCCCCTCACATCTGAGAGAAGAAAGGAACTATCAAAGGTTGTTGCAAAACAGTCTGAAGA 660
Query 772 AGGGAAGGTTGCACTGAGGAACATTAGGAGAGATGCCTTGAAATCTTATGATAAACTCGA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGGAAGGTTGCACTGAGGAACATTAGGAGAGATGCCTTGAAATCTTATGATAAACTCGA 720
Query 832 GAAGGAGAAGAAGCTGTCAGAAGACAACGTGAAGGATTTGTCAAGTGATTTGCAGAAACT 891
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAAGGAGAAGAAGCTCTCAGAAGACAACGTGAAGGATTTGTCAAGTGATTTGCAGAAACT 780
Query 892 AATTGATGTATACATGAAGAAGATAGAGGAGCTCTACAAACAGAAAGAAAAGGAATTGAT 951
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 781 AATTGATGTATACATGAAGAAGATAGAGGAGCTCTACAAACAGAAAGAGAAGGAATTGAT 840
Query 952 GAAGGTGTGACCATAATGGTTGTTAGGGGAG 982
|||||||||||||||||||||||||||||||
Sbjct 841 GAAGGTGTGACCATAATGGTTGTTAGGGGAG 871
> Ahg932672 jgi|Araly1|932672|scaffold_400660.1
Length=238
Score = 211 bits (114), Expect = 9e-54
Identities = 176/204 (86%), Gaps = 11/204 (5%)
Strand=Plus/Plus
Query 220 AGATTCGTGTTTGAGGATAATCTCTTCGGCGATATCTCCCTCTACACGCTTAATTGCGTG 279
|||||||||||||||||||||| | |||||| | | | ||||||||||||||||
Sbjct 41 AGATTCGTGTTTGAGGATAATCGATACGGCGAGA------TATGCACGCTTAATTGCGTG 94
Query 280 TTCGTTCAAGACAGACAAGCTTCCGCTCGGTGCCGGCGTCAATCTCTCCGGTGGCCCCGT 339
|||||| ||||| |||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 95 TTCGTTAAAGACCGACAAGCTTCCGCTCGGTGCTGCCGTCAGTCTCTCCGGTGGCCCCGT 154
Query 340 TGTCAAGCGCTCTCTACAGAAGAG--A--TTGGTGATAAGGTCTGCTA-CTATTGAAGAA 394
||||||||| |||||||||||||| | ||||||||||| | | | | |||||||||||
Sbjct 155 TGTCAAGCGGTCTCTACAGAAGAGGCAGATTGGTGATAAGCTTTTCAAACTATTGAAGAA 214
Query 395 ATAGAAGCAGAGAAGTCTGCTATT 418
|||||||||||||||||| |||||
Sbjct 215 ATAGAAGCAGAGAAGTCTACTATT 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46319344155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5