BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63260.1 Length=1645 Score E Sequences producing significant alignments: (Bits) Value Ahg486830 jgi|Araly1|486830|fgenesh2_kg.5__2822__AT3G63260.1 2061 0.0 > Ahg486830 jgi|Araly1|486830|fgenesh2_kg.5__2822__AT3G63260.1 Length=1461 Score = 2061 bits (1116), Expect = 0.0 Identities = 1270/1340 (95%), Gaps = 27/1340 (2%) Strand=Plus/Plus Query 250 GAGAGAAATCAATGGCCTCTGGCGGCGGAGAGGCGGATAAATCACTTGAAATCGGGTCCG 309 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 141 GAGAGAAACCAATGGCCTCTGGCGGCGGGGAGGCGGATAAATCACTTGAAATCGGGTCCG 200 Query 310 GGACCGCGGATCCCAAAATAGGCGGTACTGGGAGCAGGAGCGCCGGAGAAGAACGATACT 369 || |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 201 GGTCCGCCGATCCCAAATTAGGCGGTGCTGGGAGCAGGAGCGCCGGAGAAGAACGATACT 260 Query 370 TCAGGGCAGATACACTGGATTTCAGTAAATGGGATTTGCATATGGGTCAAACCTCTACTA 429 ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 261 TCAGGGCCGATAAACTGGATTTCAGTAAATGGGATTTGCATATGGGTCAAACCTCTAGTA 320 Query 430 GCAGCGTCCTCACC---AATTCCGCTTCCACGAGCGCTCCCGCACCGGCGATGCAGGAAT 486 ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 321 ACAGCGTCGTCACCAATAATTCCGCTTCGACGAGCGCTCCGGCACCGGCGATGCAGGAAT 380 Query 487 GGGAGATTGACCTCTCCAAACTCGATATGAAGCACGTCCTCGCTCACGGTACTTACGGCA 546 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| Sbjct 381 GGGAGATTGACCTCTCCAAACTCGATATGAGGCACGTCCTCGCTCACGGCACTTATGGCA 440 Query 547 CTGTCTACCGCGGTGTCTACGCCGGCCAAGAAGTCGCAGTGAAAGTGTTAGATTGGGGAG 606 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 441 CTGTCTACCGCGGTGTCTACGCCGGCCAAGACGTCGCAGTCAAAGTGTTAGATTGGGGAG 500 Query 607 AAGATGGTTACGCCACAC-CAGCTGAAACTACAGCTCTCCGTGCTTCCTTCGAGCAAGAG 665 |||||||||||||||| | ||||||||||| ||||||| ||| ||||||||||||||||| Sbjct 501 AAGATGGTTACGCCAC-CGCAGCTGAAACTGCAGCTCTGCGTACTTCCTTCGAGCAAGAG 559 Query 666 GTCGCCGTCTGGCAGAAGCTCGATCATCCCAACGTTACCAAGTTTATAGGAGCATCCATG 725 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 560 GTCGCCGTCTGGCAGAAGCTCGATCATCCCAACGTTACTAAGTTTATAGGAGCATCCATG 619 Query 726 GGAACCTCTGATCTGCGGATCCCTCCTGCTGGTGATACTGGCGGACGTGGTAACGGTGCA 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 620 GGAACCTCTGATCTGCGGATCCCTCCTGCTGGTGATACTGGCGGACGTGGTAACGGCGCA 679 Query 786 CATCCTGCGAGGGCCTGTTGTGTTGTGGTTGAATATGTTGCCGGAGGCACGCTTAAGAAG 845 |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 680 CATCCTGCAAGGGCCTGTTGTGTTGTCGTTGAATATGTTGCCGGAGGCACGCTCAAGAAG 739 Query 846 TTCCTCATCAAGAAATATAGGGCCAAACTACCCATCAAGGATGTCATTCAGCTCGCTTTG 905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 740 TTCCTCATCAAGAAATATAGGGCCAAACTACCCATCAAGGATGTCATTCAGCTCGCTTTG 799 Query 906 GATCTCGCTAGAGGGCTTAGTTACCTCCACTCCAAGGCGATTGTACATAGGGACGTGAAG 965 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 800 GATCTCGCTAGAGGGCTTAGTTACCTCCACTCCAAGGCGATTGTACATCGGGACGTGAAG 859 Query 966 TCAGAGAACATGCTGTTACAGCCTAACAAGACGCTGAAGATCGCTGATTTCGGGGTAGCT 1025 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 860 TCAGAGAACATGCTGTTACAACCTAACAAGACGCTGAAGATCGCTGATTTCGGGGTAGCT 919 Query 1026 AGAGTTGAAGCTCAGAACCCTCAAGACATGACGGGTGAAACTGGAACACTTGGATACATG 1085 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 920 AGAGTCGAAGCTCAGAACCCTCAAGACATGACGGGTGAAACTGGAACACTTGGATACATG 979 Query 1086 GCACCAGAGGTTCTTGAAGGAAAGCCTTACAACAGGAAATGCGATGTCTATAGCTTTGGG 1145 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 980 GCACCAGAGGTTCTTGAAGGAAAGCCGTACAACAGGAAATGCGATGTCTATAGCTTTGGG 1039 Query 1146 GTATGCCTCTGGGAAATATACTGCTGTGACATGCCCTATGCTGACTGTAGTTTTGCTGAG 1205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1040 GTATGCCTCTGGGAAATATACTGCTGTGACATGCCCTATGCTGACTGTAGTTTTGCTGAG 1099 Query 1206 ATCTCTCACGCCGTTGTTCATAGGAATCTGAGACCAGAGATTCCGAAATGCTGCCCGCAT 1265 |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || Sbjct 1100 ATCTCTCACGCCGTCGTTCATAAGAATCTGAGACCAGAGATTCCGAAATGCTGCCCGAAT 1159 Query 1266 GCGGTGGCAAACATCATGAAGAGATGCTGGGACCCGAATCCAGACAGGCGTCCGGAGATG 1325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1160 GCGGTGGCAAACATCATGAAGAGATGCTGGGACCCGAATCCAGACAGGCGTCCGGAGATG 1219 Query 1326 GAGGAGGTGGTGAAGCTGCTTGAAGCCATAGACACAAGCAAAGGTGGTGGAATGATAGCT 1385 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1220 GAGGAGGTGGTGAAGCTGCTGGAAGCCATAGACACAAGCAAAGGCGGTGGAATGATAGCT 1279 Query 1386 CCGGACCAGTTTCAGGGGTGCCTCTGTTTCTTCAAACCTCGAGGCCCCTGAATCTCTCTC 1445 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1280 CCAGACCAGTTTCAGGGGTGCCTCTGTTTCTTCAAACCTCGAGGCCCCTGAATCTCTCTA 1339 Query 1446 -C-CTCTCT--TTCCTTTTTGCTCCGTGTCTGATATATTCTTGAGAGCTGCGTGATTCTT 1501 | |||||| |||||||| |||||||||| || ||||||||||||||||||||||| | Sbjct 1340 TCTCTCTCTCGTTCCTTTT-GCTCCGTGTC-GA-ATATTCTTGAGAGCTGCGTGATTGAT 1396 Query 1502 TGGATTTTGTATTTACTTTGAGCTATGGGAGTTGGATTGGTGTGGGTTTTGTCATAAGAA 1561 | ||| | |||| | | || | ||||||||||||||||||||||||||||| Sbjct 1397 TC--TTTGG-ATTT--T--G---TA-G----TTGGATTGGTGTGGGTTTTGTCATAAGAA 1441 Query 1562 TCTTTCTGCGCTCTATGTAT 1581 |||| |||| |||||||||| Sbjct 1442 TCTTACTGCTCTCTATGTAT 1461 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61668106655 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5