BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63310.1 Length=905 Score E Sequences producing significant alignments: (Bits) Value Ahg486839 jgi|Araly1|486839|fgenesh2_kg.5__2831__AT3G63310.1 1218 0.0 > Ahg486839 jgi|Araly1|486839|fgenesh2_kg.5__2831__AT3G63310.1 Length=793 Score = 1218 bits (659), Expect = 0.0 Identities = 722/753 (96%), Gaps = 2/753 (0%) Strand=Plus/Plus Query 72 CCGGCGTTGAC-aaa-aaaaaaCGAATCCGGAAGATGTGGAATCAGAAGCATGATTTGGA 129 ||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 40 CCGGCGTTGACAAAACAAAAAACGAATTGGGAAGATGTGGAACCAGAAGCATGATTTGGA 99 Query 130 GTCGGCTCAGACGCCTCTCTACCCGATGATGTCGGAGAGCCCGGAGCTCCGATGGTCTTT 189 |||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||| Sbjct 100 GTCGGCTCAGACGCCTCTGTACCCTATGATGTTGGAGAGCCCCGAGCTCCGATGGTCTTT 159 Query 190 CATCCGCAAGGTCTATTCCATCATCTCCATCCAGCTGCTCGTTACAATCGCCGTCGCTGC 249 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| Sbjct 160 CATCCGCAAGGTCTATTCAATCATCTCCATCCAGTTGCTCGTTACAATCGCCGTGGCTGC 219 Query 250 CACCGTCGTTAAGGTTCATTCTATTTCTGTATTCTTCACCACCACCACCGCCGGCTTCGC 309 ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 220 CACCGTCGTGAAGGTTCATTCGATTTCTGTCTTCTTCACCACCACCACCGCCGGCTTCGC 279 Query 310 TCTCTACATACTTCTTATATTGACTCCATTGATCGTTATGTGTCCTTTGTATTACTATCA 369 ||||||||||||| |||| || ||||||||||| ||||||||||| |||||||||||||| Sbjct 280 TCTCTACATACTTGTTATTTTCACTCCATTGATTGTTATGTGTCCATTGTATTACTATCA 339 Query 370 CCAGAAGCACCCTGTGAACTATCTGTTACTCGGGATTTTCACCGTCGCTCTTGCCTTTGC 429 |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 340 CCAGAAGCACCCTGTGAACTATCTCTTGCTCGGCATTTTCACCGTCGCTCTTGCCTTTGC 399 Query 430 GGTTGGCTTGACCTGCGCCTTTACAAGCGGGAAGGTGATTCTGGAATCTGTGATTTTGAC 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 GGTTGGCTTGACCTGCGCCTTTACAAGCGGGAAGGTGATTCTGGAATCTGTGATTTTGAC 459 Query 490 CGCTGTTGTGGTCATATCCCTCACTCTATACACTTTCTGGGCGGCCAAAAGAGGCCATGA 549 | ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 460 CTCTGTTGTGGTCATATCCCTCACTCTCTACACTTTCTGGGCTGCCAAAAGAGGCCATGA 519 Query 550 CTTCAACTTCCTCGGACCTTTCTTGTTCGGTGCTGTCATTGTCCTCATGGTGTTTTCCTT 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 CTTCAACTTCCTCGGACCTTTCTTGTTCGGTGCTGTCATTGTCCTCATGGTGTTTTCCTT 579 Query 610 CATCCAGATTCTCTTCCCTTTAGGAAAGATCTCTGTGATGATCTATGGTTGTTTGGCATC 669 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 580 CATCCAGATTCTCTTCCCTTTAGGAAAGATCTCAGTGATGATCTATGGTTGTTTGGCTTC 639 Query 670 CATCATCTTCTGTGGCTACATTGTATATGATACCGACAACTTGATCAAGAGGCACTCCTA 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 CATCATCTTCTGTGGCTACATTGTATATGATACCGACAACTTGATCAAGAGGCACTCCTA 699 Query 730 TGACGAGTACATCTGGGCTGCTGTTTCTCTTTATTTGGATGTCATTAATCTCTTCCTATC 789 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 700 TGACGAGTACATCTGGGCTGCAGTTTCTCTTTATTTGGATGTCATTAATCTCTTCCTATC 759 Query 790 TCTCCTCACTCTCTTAAGGGCTGTTGATAGTTA 822 ||| ||||||||||||||||||| ||||||||| Sbjct 760 TCTGCTCACTCTCTTAAGGGCTGCTGATAGTTA 792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33548166960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5