BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G63310.1

Length=905
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486839 jgi|Araly1|486839|fgenesh2_kg.5__2831__AT3G63310.1        1218    0.0  


> Ahg486839 jgi|Araly1|486839|fgenesh2_kg.5__2831__AT3G63310.1
Length=793

 Score = 1218 bits (659),  Expect = 0.0
 Identities = 722/753 (96%), Gaps = 2/753 (0%)
 Strand=Plus/Plus

Query  72   CCGGCGTTGAC-aaa-aaaaaaCGAATCCGGAAGATGTGGAATCAGAAGCATGATTTGGA  129
            ||||||||||| ||| |||||||||||  ||||||||||||| |||||||||||||||||
Sbjct  40   CCGGCGTTGACAAAACAAAAAACGAATTGGGAAGATGTGGAACCAGAAGCATGATTTGGA  99

Query  130  GTCGGCTCAGACGCCTCTCTACCCGATGATGTCGGAGAGCCCGGAGCTCCGATGGTCTTT  189
            |||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||
Sbjct  100  GTCGGCTCAGACGCCTCTGTACCCTATGATGTTGGAGAGCCCCGAGCTCCGATGGTCTTT  159

Query  190  CATCCGCAAGGTCTATTCCATCATCTCCATCCAGCTGCTCGTTACAATCGCCGTCGCTGC  249
            |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct  160  CATCCGCAAGGTCTATTCAATCATCTCCATCCAGTTGCTCGTTACAATCGCCGTGGCTGC  219

Query  250  CACCGTCGTTAAGGTTCATTCTATTTCTGTATTCTTCACCACCACCACCGCCGGCTTCGC  309
            ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct  220  CACCGTCGTGAAGGTTCATTCGATTTCTGTCTTCTTCACCACCACCACCGCCGGCTTCGC  279

Query  310  TCTCTACATACTTCTTATATTGACTCCATTGATCGTTATGTGTCCTTTGTATTACTATCA  369
            ||||||||||||| |||| || ||||||||||| ||||||||||| ||||||||||||||
Sbjct  280  TCTCTACATACTTGTTATTTTCACTCCATTGATTGTTATGTGTCCATTGTATTACTATCA  339

Query  370  CCAGAAGCACCCTGTGAACTATCTGTTACTCGGGATTTTCACCGTCGCTCTTGCCTTTGC  429
            |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct  340  CCAGAAGCACCCTGTGAACTATCTCTTGCTCGGCATTTTCACCGTCGCTCTTGCCTTTGC  399

Query  430  GGTTGGCTTGACCTGCGCCTTTACAAGCGGGAAGGTGATTCTGGAATCTGTGATTTTGAC  489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  400  GGTTGGCTTGACCTGCGCCTTTACAAGCGGGAAGGTGATTCTGGAATCTGTGATTTTGAC  459

Query  490  CGCTGTTGTGGTCATATCCCTCACTCTATACACTTTCTGGGCGGCCAAAAGAGGCCATGA  549
            | ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct  460  CTCTGTTGTGGTCATATCCCTCACTCTCTACACTTTCTGGGCTGCCAAAAGAGGCCATGA  519

Query  550  CTTCAACTTCCTCGGACCTTTCTTGTTCGGTGCTGTCATTGTCCTCATGGTGTTTTCCTT  609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  520  CTTCAACTTCCTCGGACCTTTCTTGTTCGGTGCTGTCATTGTCCTCATGGTGTTTTCCTT  579

Query  610  CATCCAGATTCTCTTCCCTTTAGGAAAGATCTCTGTGATGATCTATGGTTGTTTGGCATC  669
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  580  CATCCAGATTCTCTTCCCTTTAGGAAAGATCTCAGTGATGATCTATGGTTGTTTGGCTTC  639

Query  670  CATCATCTTCTGTGGCTACATTGTATATGATACCGACAACTTGATCAAGAGGCACTCCTA  729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  640  CATCATCTTCTGTGGCTACATTGTATATGATACCGACAACTTGATCAAGAGGCACTCCTA  699

Query  730  TGACGAGTACATCTGGGCTGCTGTTTCTCTTTATTTGGATGTCATTAATCTCTTCCTATC  789
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  700  TGACGAGTACATCTGGGCTGCAGTTTCTCTTTATTTGGATGTCATTAATCTCTTCCTATC  759

Query  790  TCTCCTCACTCTCTTAAGGGCTGTTGATAGTTA  822
            ||| ||||||||||||||||||| |||||||||
Sbjct  760  TCTGCTCACTCTCTTAAGGGCTGCTGATAGTTA  792



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33548166960


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5