BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63400.1 Length=2084 Score E Sequences producing significant alignments: (Bits) Value Ahg324764 jgi|Araly1|324764|fgenesh1_pm.C_scaffold_5002308 1519 0.0 > Ahg324764 jgi|Araly1|324764|fgenesh1_pm.C_scaffold_5002308 Length=1632 Score = 1519 bits (822), Expect = 0.0 Identities = 1035/1129 (92%), Gaps = 50/1129 (4%) Strand=Plus/Plus Query 148 ATGACTAAAAAGAAGAATCCTAATGTTTTCTTGGATGTATCAATTGGTGGGGATCCCGTT 207 |||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1 ATGAGTAAAAAAAAGAATCCTAATGTTTTCTTGGATGTCTCTATTGGTGGGGATCCCGTT 60 Query 208 CAACGGATTGTCATTGAGCTTTTTGCTGATGTTGTCCCCAAGACAGCGGAAAACTTCCGT 267 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 CAACGGATTGTCATTGAGCTTTTTGCTGATGTTGTCCCCAAGACAGCCGAAAACTTCCGT 120 Query 268 GCCCTCTGCACAGGTGAGGCGGGCGTTGGAAAGTCCACTGGGAAGCCTCTACATTTCAAA 327 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 121 GCCCTCTGCACAGGTGAGGCGGGAGTTGGAAAGGCCACTGGGAAGCCTCTACATTTCAAA 180 Query 328 GGATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAGGGTGGTGATTTTTCCAAT 387 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 GGATCATCTTTCCATCGAGTTATCAAAGGATTCATGGCTCAGGGTGGTGACTTTTCCAAT 240 Query 388 GGGAATGGCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAGATGAGAACTTTAGA 447 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 GGAAATGGCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAGATGAGAATTTTAGA 300 Query 448 TTGGACCATGATGGAGCTGGAGTCCTTTCAATGGCAAATTGTGGCCCAAATACCAACGGG 507 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTGGATCATGATGGAGCTGGAGTCCTTTCAATGGCAAATTGTGGCCCAAATACCAACGGG 360 Query 508 TCCCAATTTTTTATACTTTTTAAACGCCAACCACATCTTGATGGGAAGCATGTTGTATTT 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCCAATTTTTTATACTTTTTAAACGCCAACCACATCTTGATGGGAAGCATGTTGTATTT 420 Query 568 GGCAAAGTCGTTGAAGGGATGGCAGTAATCAAGAAAATGGAACTTGTGGGGACGAGTGAT 627 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGCAAAGTCGTTGAGGGGATGGCAGTAATCAAGAAAATGGAACTTGTGGGGACGAGTGAT 480 Query 628 GGGAAACCTACTAGCCCAGTCAAAATAATAGACTGTGGTGAAACGTCTCAGATAAGAGCA 687 |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct 481 GGGAAACCTACTAGCCCAGTTAAAATAATCGACTGTGGCGAAACGTCTCAGATAAGAGCA 540 Query 688 CATGATGCTGCTGAAAGAGAAAAAGGGAAATCGAAAAAATCAAACAAGAACTTTTCTCCT 747 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 541 CATGATGCTGCTGAAAGAGAAAAAGGGAAATCGAAAAAATCAAACAAGGGCCTTTCTTCT 600 Query 748 GGTGACGTATCTGACCGTGAAGCTAAGGAGACACGCAAAAAAGAATCTAACGAGAAAAGG 807 |||||| ||| | ||| | | ||||||||||||| || ||||||||| Sbjct 601 GGTGACATAT-T-----TGA--C--------C--GCAAAAAAGAATCAAAGGAGAAAAGG 642 Query 808 ATAAAACGAAAAAGAAGATACTCTTCGTCAGATTCATATAGCTCAAGTTCCGACTCAGAT 867 ||||| |||||||||| |||||||||||| |||||||||||||||||||| ||||||||| Sbjct 643 ATAAAGCGAAAAAGAATATACTCTTCGTCGGATTCATATAGCTCAAGTTCTGACTCAGAT 702 Query 868 TCAGATTCGGAATCAGAAGCATATTCATCTTCCTCCTATGAGTCTAGTTCTTCCAGTGAT 927 |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 703 TCAGATTCGGAATCAGAAACATATTCATCCTCCTCCTATGAGTCTAGTTCTTCCAGTGAT 762 Query 928 GGGAAGCATAGGAAGAGGAAGTCAACAACA-AGACACAAAGGCCGACGCGGGGAAAGAAA 986 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 763 GGGAAGCATAGGAAGAGGAAGTCAACAA-AGAGACACAAAGGCCGACGCGGGGAAAGAAA 821 Query 987 GAGTAAAGGACGAAGCGGGAAAAAGAAAGCTCGGCCAGATAGAAAACC-------A-A-G 1037 || ||||||||||| |||||||||||||||||||| ||||||| |||| | | | Sbjct 822 GATTAAAGGACGAAACGGGAAAAAGAAAGCTCGGCGAGATAGACAACCTCGGCGCAGAAG 881 Query 1038 CACGAATAGTTCAAGTGACACGGAGAGTAGCAGCAGTTCTGATGATGAGAAAGTGGGCCA 1097 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 882 CACGGATAGTTTAAGTGACACGGAGAGTAGCAGCAGTTCTGATGATGAGAAAG----CCA 937 Query 1098 CAAAGCCATAAAGTCAGTGAAAGTTGATAACGCTGATCAACACGCCAACTTGGATGACTC 1157 | | | || | ||| | | | | ||||||||||| |||| ||||||||||||| Sbjct 938 C----C-A-AA-G-CAG--A---T--A-A-CGCTGATCAACGCGCCGACTTGGATGACTC 980 Query 1158 AGTGAAATCAAGGAGCAGGAGCCCAATTCGTAGGAGAAACCAAAACAGCAGGAGCAAAAG 1217 | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 981 ATTGAAATCAAGGAGCAGGAGCCCAATTCGTAGGACTAACCAAAACAGCAGAAGCAAAAG 1040 Query 1218 TCCTAGTAGGAGCCCTGTGAGAGTTCTTGGAAATGGAAACAGAAGTCCT 1266 ||||||||||||||||||||||| ||| |||||||||| |||||||||| Sbjct 1041 TCCTAGTAGGAGCCCTGTGAGAGATCTAGGAAATGGAAGCAGAAGTCCT 1089 Score = 985 bits (533), Expect = 0.0 Identities = 584/608 (96%), Gaps = 6/608 (1%) Strand=Plus/Plus Query 1253 GAAACAGAAGTCCTAGTAGGAGCCCTGTGAGAGATCTTGGAAATGGAAGCAGAAGTCCTC 1312 ||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1031 GAAGCAAAAGTCCTAGTAGGAGCCCTGTGAGAGATCTAGGAAATGGAAGCAGAAGTCCTC 1090 Query 1313 GTGAGAAGCCAACAGAGGAAACTGTGGGGAAATCTTTCAGAAGCCCATCTCCAAGTGGTG 1372 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1091 ATGAGAAGCCAACAGAGGGAACTGTGGGGAAATCTTCCAGAAGCCCATCTCCAAGTGGTG 1150 Query 1373 TGCCCAAGCGCATCCGAAAGGGGCGTGGGTTCACCGAACGCTATTCCTTTGCTCGGAAGT 1432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1151 TGCCCAAGCGCATCCGAAAGGGGCGTGGGTTCACCGAACGCTATTCCTTTGCTCGGAAGT 1210 Query 1433 ACCATACTCCTTCTCCTGAGCGTTCTCCTCCTAGACATTGGCCTGACAGAAGAAACTTTC 1492 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 1211 ACCATACGCCTTCTCCTGAGCGTTCTCCTCCTAGACATTGGCCTGACAGGAGAAGCTTTC 1270 Query 1493 AGGATAGGAACAGGGATAGGTATCCGAGCAACAGAAGTTACTCTGAGCGCTCACCGAGGG 1552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1271 AGGATAGGAACAGGGATAGGTATCCGAGCAACAGAAGTTACTCTGAGCGCTCACCGAGGG 1330 Query 1553 GACGCTTTAGAAGCCCACCCAGAAGAAGGAGCCCTCCAAGGTACAACCGGAGGAGAAGGA 1612 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1331 GACGCTTTAGAAGCCCAACCAGAAGAAGGAGCCCTCCAAGGTACAACCGGAGGAGAAGGA 1390 Query 1613 GCACTTCTCGGAGTCCAGATGGGTACCGTAGACGATTGAGAGACGGAAGCAGGAGCCAGA 1672 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1391 GCACTTCTCGGAGTCCAGATGGGTACCGTAGACGCTTGAGAGACGGAAGCAGGAGCCAGA 1450 Query 1673 GTCCGAGGCATCGTAGCCGTAGCCAGAGCCCTAGAAAGAGGCAGCCAATTAGCCAAGACC 1732 |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1451 GTCCAAGGCATC--A----TAGCCAGAGCCCTAGAAAGAGGCAGCCAATTAGCCAAGACC 1504 Query 1733 TGAAATCCCGTCTCGGGCCACAGAGATCCCCCATCAGAGGAGGACGCACCTCTCCTGCAG 1792 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1505 TTAAATCCCGTCTCGGGCCACAGAGATCCCCCATCAGAGGAGGACGCACCTCTCCTGCAG 1564 Query 1793 AATCACTCAGCCCTTCTCACTCACCTTCTCCACCAGGAAAGAGAGGTCTGGTTAGCTATG 1852 ||| |||||||||||||||||| | |||||||||||| ||||||||||||||||||||| Sbjct 1565 GATCGCTCAGCCCTTCTCACTCATCATCTCCACCAGGACAGAGAGGTCTGGTTAGCTATG 1624 Query 1853 CGGATTGA 1860 |||||||| Sbjct 1625 CGGATTGA 1632 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78389724210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5