BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63410.1 Length=1361 Score E Sequences producing significant alignments: (Bits) Value Ahg939440 jgi|Araly1|939440|scaffold_503631.1 1712 0.0 > Ahg939440 jgi|Araly1|939440|scaffold_503631.1 Length=1055 Score = 1712 bits (927), Expect = 0.0 Identities = 1011/1051 (96%), Gaps = 7/1051 (1%) Strand=Plus/Plus Query 106 GATCTGTCATCGATGGCCTCTTTGATGCTCAACGGGGCCATTACCTTCCCCAAAGGTTTA 165 |||||| |||||||||| |||| | |||||||||||||||||||||||||||| |||||| Sbjct 10 GATCTGACATCGATGGCTTCTTCGTTGCTCAACGGGGCCATTACCTTCCCCAAGGGTTTA 69 Query 166 GG-TTCCCCTGGTTCCAATTTGCATGCCAGATCGATTCCTCGGCCGACCTTACTCTCAGT 224 || |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 70 GGTTTCCCC-GGTTCCAATTTGCATGCCAGATCGATTCCTCGGCCGACTTTACTCTCAGT 128 Query 225 TACCCGAACCTCCACACCTAGACTCTCGGTGGCTACTAGATGCAGCAGCAGCAGCGT-GT 283 ||||||||| |||||||||||||||||||||| ||||||| |||||||| | || || Sbjct 129 CACCCGAACCACCACACCTAGACTCTCGGTGGCAACTAGAT---GCAGCAGC-GTGTCGT 184 Query 284 CGTCTTCCCGGCCATCGGCGCAACCTAGGTTCATTCAGCACAAGAAGGAGGCTTACTGGT 343 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 185 CGTCTTCCCGGCCATCGGCGCAACCTAGGTTCATTCAGCACAAAAAGGAGGCTTACTGGT 244 Query 344 TCTACAGGTTCTTATCCATCGTATACGACCATGTCATCAATCCTGGGCATTGGACCGAGG 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 TCTACAGGTTCTTATCCATCGTATACGACCATGTCATCAATCCTGGGCATTGGACCGAGG 304 Query 404 ATATGAGAGACGACGCTCTTGAGCCAGCGGATCTCAGCCATCCGGACATGCGAGTGGTCG 463 ||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||| Sbjct 305 ATATGAGGGACGACGCTCTGGAGCCGGCGGATCTCAGCCATCCCGACATGCGCGTGGTCG 364 Query 464 ATGTCGGCGGCGGAACTGGTTTCACTACTCTGGGCATAGTCAAGACAGTGAAGGCCAAGA 523 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 365 ATGTCGGCGGCGGCACTGGTTTCACTACTCTGGGCATAGTCAAGACTGTGAAGGCTAAGA 424 Query 524 ATGTGACCATTCTGGACCAGTCGCCACATCAGCTGGCCAAAGCAAAGCAAAAGGAGCCGT 583 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 425 ATGTCACCATTCTGGACCAGTCGCCACATCAGCTGGCCAAAGCGAAGCAAAAGGAGCCGT 484 Query 584 TGAAAGAATGCAAGATCGTCGAGGGAGATGCTGAGGATCTTCCTTTTCCAACCGATTATG 643 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 485 TGAAAGAATGCAAGATCGTCGAGGGAGATGCTGAGGATCTTCCTTTCCCCACCGATTATG 544 Query 644 CTGACAGATACGTTTCTGCTGGAAGCATTGAGTACTGGCCGGACCCGCAGAGGGGAATAA 703 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 545 CAGACAGATACGTTTCTGCTGGAAGCATTGAGTACTGGCCCGACCCGCAGAGGGGAATAA 604 Query 704 GGGAAGCGTACAGGGTTCTCAAGATCGGTGGCAAAGCGTGTCTCATCGGCCCTGTCTACC 763 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 GGGAAGCCTACAGGGTTCTCAAGATCGGTGGCAAAGCGTGTCTCATCGGCCCTGTCTACC 664 Query 764 CAACCTTCTGGCTCTCTCGCTTCTTTTCTGATGTCTGGATGCTCTTCCCCAAGGAGGAAG 823 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 665 CAACCTTCTGGCTCTCTCGCTTCTTTGCTGATGTATGGATGCTCTTCCCCAAGGAGGAAG 724 Query 824 AGTACATTGAGTGGTTCAAGAATGCCGGTTTCAAGGACGTTCAGCTCAAGAGGATTGGCC 883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725 AGTACATTGAGTGGTTCAAGAATGCCGGTTTCAAGGACGTTCAGCTCAAGAGGATTGGCC 784 Query 884 CCAAGTGGTACCGTGGTGTTCGCAGGCACGGCCTTATCATGGGATGTTCTGTCACTGGTG 943 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 CCAAGTGGTACCGTGGTGTTCGCAGGCACGGCCTTATCATGGGATGTTCTGTCACTGGTG 844 Query 944 TTAAACCTGCCTCCGGTGACTCTCCTCTCCAGCTTGGTCCAAAGGAAGAGGACGTAGAGA 1003 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 845 TTAAACCTGCCTCCGGTGACTCTCCTCTCCAGCTTGGTCCAAAGGAAGAGGACGTAGAAA 904 Query 1004 AGCCTGTCAACAACCCCTTCTCCTTCTTGGGACGCTTCCTCCTGGGAACTCTAGCAGCTG 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 AGCCTGTCAACAACCCCTTCTCCTTCTTGGGACGCTTCCTCCTGGGAACTCTAGCAGCTG 964 Query 1064 CCTGGTTTGTGTTAATCCCTATCTACATGTGGATCAAGGATCAGATCGTTCCCAAAGACC 1123 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 965 CCTGGTTTGTGCTAGTCCCGATCTACATGTGGATCAAGGATCAGATCGTTCCCAAAGACC 1024 Query 1124 AACCCATCTGATCCTTCTCTTCTAGGACATG 1154 |||||||||||||| |||||||||||||||| Sbjct 1025 AACCCATCTGATCCGTCTCTTCTAGGACATG 1055 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50932217112 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5