BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63490.1 Length=1442 Score E Sequences producing significant alignments: (Bits) Value Ahg939449 jgi|Araly1|939449|scaffold_503640.1 1618 0.0 > Ahg939449 jgi|Araly1|939449|scaffold_503640.1 Length=1077 Score = 1618 bits (876), Expect = 0.0 Identities = 1029/1097 (94%), Gaps = 34/1097 (3%) Strand=Plus/Plus Query 46 GAAAGAAAGAGAGCTCCAACAATGGCTGCTTGCGCTACTCACTCCTCTCTCATGCTAGCA 105 ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| Sbjct 1 GAAAGAAAGAGAGCTCCAAGAATGGCTGCCTGCGCCACTCACTCCTCTCTCATGCTAGCA 60 Query 106 TACGCCGCCGCATCCACTCGTTCCCAGGACCTTA---CCCCTACTCCATCTCTTTTCTCT 162 || ||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 61 TA---CGCCG------CTCGTTCCCAGGACCTTACCCCCCCTACTCCATCTCTTTTCTCT 111 Query 163 TTTGCCAGCTCCAGACCCAACCACTTGAGCTTCCCGCTTCTTCTCCTTGGGGGTTCCAGG 222 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 112 TTTGCCAGCTCTAGACCCAACCACTTGAGCGTCCCGCTTCTTCTCCTTGGGGGTTCCAGG 171 Query 223 GACCGGAGATGTGCTGCTATTGACAGAGCTTCCAACC-A-----CAAGTTTATTGTCTCC 276 ||||| ||| || ||||||||||||||||| | | || ||||||||||| Sbjct 172 GACCGCAGA-----TG----TGACAGAGCTTCCAACCGAGCTTTCCAGGTTATTGTCTCC 222 Query 277 GCCGTGGCCGCTGAGGCTGACCTCGACACGGAGG-AG--GACCTGGAGCAGACCGCCACC 333 ||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 223 GCCGTGGCCGCTGAGGCTGACCTCGACACCGAGGAAGACGACCTGGAGCAGACCGCCACC 282 Query 334 GCCGTCCTTGATCCGCCCAAGCCTAAGAAAGGAAAAGCCGCTTTGGTTCTCAAGAGAGAT 393 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 GCCGTCCTTGATCCGCCCAAGCCTAAGAAAGGAAAAGCCGCTTTGGTTCTCAAGAGAGAC 342 Query 394 AGAACAAGGTCTAAGAGGTTTTTGGAAATCCAAAAGCTAAGGGAAACCAAAAAGGAGTAT 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 AGAACAAGGTCTAAGAGGTTTTTGGAAATCCAAAAGCTAAGGGAAACCAAAAAGGAGTAT 402 Query 454 GATGTCAACACTGCTATCTCTTTGCTTAAACAAACTGCCAACACAAGGTTTGTTGAGTCT 513 ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 403 GATGTCATCACTGCTATATCTTTGCTTAAACAAACTGCCAACACCAGGTTTGTTGAGTCT 462 Query 514 GTTGAAGCCCATTTCCGTCTCAACATCGATCCTAAGTACAATGACCAGCAGCTGCGTGCA 573 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 463 GTTGAAGCCCATTTCCGTCTCAACATCGATCCAAAGTACAATGACCAGCAGCTGCGTGCT 522 Query 574 ACGGTGAGCCTGCCTAAGGGAACTGGCCAGACTGTTATAGTCGCTGTTCTTGCACAAGGT 633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 ACGGTGAGCCTGCCTAAGGGAACTGGCCAGACTGTTATAGTCGCTGTTCTTGCACAAGGT 582 Query 634 GAGAAGGTTGATGAAGCCAAAAGTGCAGGGGCAGATATTGTGGGCAGTGATGATTTAATC 693 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 583 GAGAAGGTCGATGAAGCCAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTAATC 642 Query 694 GAACAGATTAAAGGAGGCTTCATGGAGTTTGACAAGCTGATTGCATCCCCGGATATGATG 753 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 643 GAACAGATTAAAGGAGGCTTCATGGAGTTTGATAAGTTGATTGCATCCCCGGATATGATG 702 Query 754 GTCAAGGTTGCTGGCCTGGGAAAGATTCTTGGACCACGGGGGCTCATGCCAAATCCCAAG 813 |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 703 GTCAAGGTTGCTGGCCTGGGAAAGATTCTTGGCCCACGCGGACTCATGCCAAATCCCAAG 762 Query 814 GCTGGTACAGTCACAGCGAACATTCCCCAGGCTATTGAAGAGTTCAAGAAGGGGAAAGTT 873 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 763 GCTGGTACGGTCACAGCTAACATTCCCCAGGCTATTGAAGAGTTCAAGAAGGGGAAAGTT 822 Query 874 GAATTCAGAGCAGACAAAACTGGGATTGTTCACATTCCATTTGGGAAAGTTAATTTTACA 933 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 823 GAATTCAGAGCAGACAAAACTGGGATTGTTCACATTCCCTTTGGGAAAGTTAATTTTACA 882 Query 934 GAGGAAGACCTTCTCATAAACTTCCTTGCAGCAGTGAAATCGGTGGAGACAAACAAGCCA 993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 GAGGAAGACCTTCTCATAAACTTCCTTGCAGCAGTGAAATCGGTGGAGACAAACAAGCCA 942 Query 994 AAGGGAGCTAAAGGAGTGTACTGGAAAAGCGCTCACATATGCTCGTCAATGGGGCCTTCC 1053 |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 943 AAGGGAGCAAAAGGAGTGTACTGGAAAAGTGCACACATATGCTCATCAATGGGGCCTTCC 1002 Query 1054 ATCAAGTTGAACATAAGAGAGATGATAGACTTCAAGCCTCCCACTGCGAACTAATC-GAC 1112 ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| | | | Sbjct 1003 ATCAAGTTGAACATAAGGGAGATGATTGACTTCAAGCCTCCCGCTGCGAACTAACCAG-C 1061 Query 1113 AAC-GCCATTTGTAAAT 1128 ||| || || ||||||| Sbjct 1062 AACCGC-ATCTGTAAAT 1077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53935786920 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5