BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00030.1
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490564 jgi|Araly1|490564|fgenesh2_kg.6__3698__AT4G00030.1 1016 0.0
> Ahg490564 jgi|Araly1|490564|fgenesh2_kg.6__3698__AT4G00030.1
Length=656
Score = 1016 bits (550), Expect = 0.0
Identities = 623/657 (95%), Gaps = 10/657 (2%)
Strand=Plus/Plus
Query 13 AACCATGGAAATTGCAATTTGCAAACATGGCGCTCGCGCTCTCGCTGTCGGCATGT--T- 69
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 1 AACCATGGAAATTGCAATTTGCAAACATGGCGCTCGCGCTCT--C-GTCGGCATGTCCTC 57
Query 70 CTCCTCCACTCCGCCGCACTCGTCGTGCCGGTTTTCGAACAAGCTGCTCGATCTTCGCGA 129
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CTCCTCCACTCCGCCGCAGTCGTCGTGCCGGTTTTCGAACAAGCTGCTCGATCTTCGCGA 117
Query 130 ATCCAGCACAGCGAGCCAAGAGGAAGCTGCTTGAGCTGATCTCCGAGGAGGATCGAGGTC 189
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATCCAGCACAGCGAGCCAAGCGGAAGCTGCTTGAGCTGATCTCCGAGGAGGATCGAGGTG 177
Query 190 TGAGAACCCAGAAAGACCCCAAGAAGCGAGATGAAATCGTGAACGCCATCGAATCCATGA 249
||||||||||||||||| ||| ||||||||||| ||||||| | |||||||||||||||
Sbjct 178 TGAGAACCCAGAAAGACGCCACGAAGCGAGATGCAATCGTGGATGCCATCGAATCCATGG 237
Query 250 CGGTTATCGG-GCGCAGCTCCATCACCAC-AGACGACTCTCTATCTGCCACGTGGCGGCT 307
|||||||||| | |||||||||||||||| || || ||||||||| |||| ||||||||
Sbjct 238 CGGTTATCGGAG-GCAGCTCCATCACCACGGGA-GAATCTCTATCTTCCACTTGGCGGCT 295
Query 308 CTTGTGGACGACGGAGAAGGAACAGTTGTTCATCATAGAAAAGGCAGGCTTGTTTGGGAC 367
| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 296 CCTGTGGACGACGGAGAAGGAACAGCTATTCATCATAGAAAAGGCGGGCTTGTTTGGGAC 355
Query 368 GACCGCCGGAGACGTTTTGCAGGTGATCGATGTGAATAAACGGATCCTCAATAACGTCAT 427
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 356 GACCGCCGGAGACGTTTTGCAGGTGATCGATGTTAATAAACGGATCCTCAATAACGTCAT 415
Query 428 CACTTTCCCGCCGGACGGGGTTTTCTTCGTACGCTCCGATATCGATATCGCTTCCCCGCA 487
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 416 CACTTTCCCGCCGGACGGAGTTTTCTTCGTACGCTCTGATATCGAGATCGCTTCCCCGCA 475
Query 488 GAGAGTCAATTTCAGATTCAATAGTGCGGTATTGAGAGGGAAGAACTGGGAGCTCCCACT 547
|||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct 476 GAGAGTCAATTTCAGATTCAATAGTGCGGTGTTGAGAGCGAAGAACTGGGAGATCCCACT 535
Query 548 GCCACCATTTGGGAAGGGCTGGTTTGAGAATGTGTATATGGACGGTGAGATCAGAGTGGC 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GCCACCATTTGGGAAGGGCTGGTTTGAGAATGTGTATATGGACGGTGAGATCAGAGTGGC 595
Query 608 CAAGGACATCAGAGGAGACTACTTAATTGTTGATCGTGCTCCTTATAACTGGACTGA 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CAAGGACATCAGAGGAGACTACTTAATTGTTGATCGTGCTCCTTATAACTGGACTGA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26647918983
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5