BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00040.1 Length=1366 Score E Sequences producing significant alignments: (Bits) Value Ahg490563 jgi|Araly1|490563|fgenesh2_kg.6__3697__AT4G00040.1 2043 0.0 Ahg470071 jgi|Araly1|470071|fgenesh2_kg.1__25__AT1G02050.1 887 0.0 > Ahg490563 jgi|Araly1|490563|fgenesh2_kg.6__3697__AT4G00040.1 Length=1347 Score = 2043 bits (1106), Expect = 0.0 Identities = 1247/1316 (95%), Gaps = 5/1316 (0%) Strand=Plus/Plus Query 7 TTCATTGTGAACTCACAAAGATGTTGGTGTCCGCAAGGGTAGAGAAACAAAAGCGTGTTG 66 |||| ||||| || | ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 TTCACTGTGACCTTAAAAAGATGTTGGCGTCCGCAAGGGTAGAGAAACAAAAGCGTGTTG 60 Query 67 CTTATCAGGGGAAGGCGACAGTGCTTGCTCTCGGTAAGGCCTTGCCGAGCAATGTTGTTT 126 | ||||||||||| || ||| |||||||||||||||||||||| || ||||||||||||| Sbjct 61 CATATCAGGGGAAAGCAACACTGCTTGCTCTCGGTAAGGCCTTCCCCAGCAATGTTGTTT 120 Query 127 CCCAGGAGAATCTCGTGGAGGAGTATCTCCGTGAAATCAAATGCGATAACCTTTCTATCA 186 |||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| Sbjct 121 CCCAGGAGAATCTCGTGGAGGATTATCTCCGTGAAATCAAATGTGATGACCTTTCTATCA 180 Query 187 AAGACAAGCTGCAACACTTGTGCAAAAGCACAACTGTCAAGACACGCTACACAGTCATGT 246 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 181 AAGACAAGCTGCAACACTTGTGTAAAAGCACAACTGTCAAGACACGCTACACAGTCATGT 240 Query 247 CACGGGAGACGCTGCACAAATACCCTGAACTAGCAACCGAGGGTTCCCCAACCATCAAAC 306 | || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 CTCGTGAGACGCTGCAAAAATACCCTGAACTAGCAATCGAGGGTTCCCCAACCATCAAAC 300 Query 307 AGAGGCTTGAGATTGCAAACGATGCGGTTGTGCAGATGGCATATGAAGCGAGCTTGGTTT 366 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 301 AGAGGCTTGAGATTGCAAACGAAGCGGTTGTGCAGATGGCATATGAAGCGAGCTTGGTTT 360 Query 367 GCATCAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATCTTGTCTACGTTTCCTCCA 426 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 361 GCATCAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATCTAGTCTATGTTTCCTCCA 420 Query 427 GTGAGTTCCGTTTGCCCGGAGGTGATCTTTACCTCTCGGCACAGCTGGGCCTTAGCAACG 486 ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| Sbjct 421 GTGAGTTCCGTTTGCCCGGAGGTGACCTCTACCTCTCGACACAGCTGGGCCTTAGCAACG 480 Query 487 AGGTTCAGAGAGTGATGCTGTATTTTCTTGGATGCTATGGAGGTTTGAGTGGGCTGCGCG 546 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 481 AGGTTCAGAGAGTGATGCTGTATTTTCTGGGATGCTATGGAGGTTTGAGCGGGCTGCGCG 540 Query 547 TGGCCAAAGACATTGCTGAGAACAACCCAGGGAGCCGTGTGTTGCTCACCACCTCTGAGA 606 |||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||| Sbjct 541 TGGCTAAAGACATTGCCGAGAACAACCCAGGGAGCCGGGTGCTGCTCACCACCTCCGAGA 600 Query 607 CTACCGTTCTGGGGTTCCGCCCACCCAACAAAGCTCGTCCTTACAACTTAGTCGGGGCTG 666 |||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| Sbjct 601 CTACGGTTCTGGGGTTCCGCCCGCCCAACAAAGCTCGCCCTTACGACTTAGTCGGGGCTG 660 Query 667 CACTCTTTGGAGATGGAGCAGCTGCCCTGATCATCGGAGCAGACCCTACAGAGTCGGAAT 726 |||| |||||||| ||||||||||| || ||||||||||| ||||||| |||||| |||| Sbjct 661 CACTGTTTGGAGACGGAGCAGCTGCTCTAATCATCGGAGCTGACCCTAGAGAGTCTGAAT 720 Query 727 CTCCTTTCATGGAGCTTCACTGTGCTATGCAGCAGTTCCTGCCCCAAACACAGGGGGTGA 786 |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 721 CTCCCTTCATGGAGCTTCACTGTGCTCTGCAGCAGTTCCTTCCCCAAACACAGGGGGTGA 780 Query 787 TCGACGGGCGGCTGTCAGAAGAGGGCATAACCTTCAAGCTAGGAAGAGACCTCCCTCAGA 846 |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 781 TCGACGGGAGGCTGTCAGAAGAGGGAATAAGCTTCAAGCTAGGAAGAGACCTCCCTCAGA 840 Query 847 AGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTAGTGGCAAAGGCTGGCTCTGGTG 906 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 841 AGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTGGTGGCAAAGGCTGGCTCTGGTT 900 Query 907 CGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCTGGTGGACCAGCCATCCTGAGCG 966 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 901 CGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCGGGTGGACCAGCCATCCTGAGCG 960 Query 967 GGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGAATGCAGCAGAAGGGCGTTGA 1026 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGAATGCAGCAGAAGGGCGTTGA 1020 Query 1027 TGGATTATGGGAACGTAAGCAGCAACACCATCTTCTACATAATGGACAAAGTCAGAGATG 1086 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1021 TGGATTATGGGAACGTAAGCAGCAACACCATCTTCTACATAATGGACAAAGTAAGAAATG 1080 Query 1087 AGCTTGAGAAGAAAGGCACAGAGGGAGAAGAGTGGGGTCTGGGCTTAGCTTTCGGACCGG 1146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 AGCTTGAGAAGAAAGGCACAGAGGGAGAAGAGTGGGGTCTGGGCTTAGCTTTCGGACCGG 1140 Query 1147 GAATCACTTTCGAAGGCTTTCTCATGAGGAACCTCTAAATGTATATGAACTGGACATTT- 1205 |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| Sbjct 1141 GAATCACTTTCGAAGGCTTTCTCATGAGGAGCCTCTAAATGTCTATGAACCGGACATTTT 1200 Query 1206 CTCAACAAATAAAATATACAGGAACCGATGCTAACACACATACAT----CATGTAATGGT 1261 || |||||||||||||| ||||||||||||| ||||||||||||| |||| |||||| Sbjct 1201 CTAAACAAATAAAATATTCAGGAACCGATGCCAACACACATACATGATACATGGAATGGT 1260 Query 1262 TGCATTAGTTTTGTTCTTTAATGGTAAATCACAGAAATACATCAATACAGTAAGTT 1317 |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| Sbjct 1261 TGCATTAGTTTTGTTCTTCAATGGTAAATCATAGAAATGCATCAATACAGTAAGTT 1316 > Ahg470071 jgi|Araly1|470071|fgenesh2_kg.1__25__AT1G02050.1 Length=1291 Score = 887 bits (480), Expect = 0.0 Identities = 912/1117 (82%), Gaps = 43/1117 (4%) Strand=Plus/Plus Query 78 AAGGCGACAGTGCTTGCTCTCGGTAAGGCCTTGCCGAG-CAATGTTGTTTCC-CAGGAGA 135 ||||| ||| |||||||||| || || ||||| || || ||| || | |||| ||||||| Sbjct 148 AAGGCAACACTGCTTGCTCTTGGCAAAGCCTTCCCAAGCCAA-GTCG-TTCCTCAGGAGA 205 Query 136 ATCTCGTGG-AGGAGTATCTCCGTGAAATCAAATGCGATAAC-CTTTCTATCAAAGACAA 193 |||| |||| |||| | ||| || || | |||||| ||| || | || ||||||||| || Sbjct 206 ATCTAGTGGAAGGA-TTTCTACGAGACACCAAATGTGATGACGCGTT-TATCAAAGAAAA 263 Query 194 GCTGCAACACTTGTGCAAAAGCACAACTGTCAAGACACGCTACACAGTCA-TGTCACGGG 252 | || ||||||||||||||| |||||| || ||||| |||||||| || | ||||||| | Sbjct 264 GTTGGAACACTTGTGCAAAACCACAACCGTGAAGACGCGCTACACGGT-ATTGTCACGAG 322 Query 253 AGACGCTGCACAAATACCCTGAACTAGCAACCGAGGGTTCCCCAACCATCAAACAGAGGC 312 ||| ||| | ||||||||||| ||| |||| |||||||| ||||| ||||| || || | Sbjct 323 AGATACTGGATAAATACCCTGAGCTAACAACAGAGGGTTCACCAACAATCAAGCAAAGAC 382 Query 313 TTGAGATTGCAAACGATGCGGTTGTGCAGATGGCATAT-GAAGCGAGCTT-GGTTTGCAT 370 |||| ||||||||||| ||||||||| | ||||||| | ||||| || || || |||||| Sbjct 383 TTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCAT-TGGAAGCCAGTTTAGG-TTGCAT 440 Query 371 CAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATC-TTGTCTACGTTTCCTCCAGTG 429 |||||||||||||||| |||||||||| |||||||| | |||||||||||||||| || | Sbjct 441 CAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCA-CATTGTCTACGTTTCCTCAAGCG 499 Query 430 AGTTCCGTTTGCCCGGAGGTGATCTTTACCTCTCGGCACAGCTGGGCCTTAGCAACGAGG 489 || |||| || ||||| ||||| ||||||||||| ||| |||| ||||| || || || | Sbjct 500 AGATCCGATTACCCGGTGGTGACCTTTACCTCTCAGCAAAGCTAGGCCTGAGGAATGACG 559 Query 490 TTCAGAGAGTGATGCTGTATTTTCTTGGATGCTATGGAGGTTTGAGTGGGCTGCGCGTGG 549 | | |||||||||||||||||||| |||||||| |||||| ||| ||| || || |||| Sbjct 560 TGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGGTGTGACTGGCCTCCGTGTGG 619 Query 550 CCAAAGACATTGCTGAGAACAACCCAGGGA-GCCGTGTGT-TGCTCACCACCTCTGAGAC 607 ||||||||||||||||||||||||| |||| ||||||| | ||||||| |||||||| || Sbjct 620 CCAAAGACATTGCTGAGAACAACCC-GGGAAGCCGTGT-TCTGCTCACAACCTCTGAAAC 677 Query 608 TACCGTTCTGGGGTTCCGCCCACCCAACAAAGCTCGTCCTTACAACTTAGTCGGGGCTGC 667 ||| |||| ||||| |||||||| |||||||||||||| ||| || |||| || ||||| Sbjct 678 CACCATTCTCGGGTTTCGCCCACCAAACAAAGCTCGTCCGTACGACCTAGTTGGAGCTGC 737 Query 668 ACTCTTTGGAGATGGAGCAGCTGCCCTGATCATCGGAGCAGACCCTACAGAGTCG-GAAT 726 || ||||||||||| |||||||| | ||||||||||| || || | ||||| | ||| Sbjct 738 TCTGTTTGGAGATGGTGCAGCTGCTGTAATCATCGGAGCTGATCCGAGAGAGT-GTGAAG 796 Query 727 CTCCTTTCATGGAGCTTCACTGTGCTATGCAGCAGTTCCTGCCCCAAACACAGGGGGTGA 786 |||||||||||||||| |||| ||| | ||||||||| |||| |||||| |||| Sbjct 797 CTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTCTTGCCGGGGACACAGAACGTGA 856 Query 787 TCGACGGGCGGCTGTCAGAAGAGGGCATAACCTTCAAGCTAGGAAGAGACCTCCCTCAGA 846 |||||||| || || | || || ||||||| ||||||||| ||| |||||||||| |||| Sbjct 857 TCGACGGGAGGTTGACGGAGGAAGGCATAAACTTCAAGCTTGGACGAGACCTCCCGCAGA 916 Query 847 AGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCT-AGTGGCAAAGGCTGGCT--C-- 901 |||| || || ||| | || ||||||||||||||||| | ||| ||||||||| | | Sbjct 917 AGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCTGA-TGGGAAAGGCTGG-TGGCGA 974 Query 902 TG-GTGCGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCTGGTGGACCAGCCATCC 960 || || || ||||||| |||||| | ||||||||||||||||| || ||||| || || | Sbjct 975 TGAGT-CGATGGAGTTCAATGACATGTTCTGGGCAGTTCATCCAGGAGGACCTGCGATTC 1033 Query 961 TGAGCGGGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGA-ATGCAGCAGAAGG 1019 ||| | | ||||||||||| || |||||| || || |||||||| | ||||||||||| Sbjct 1034 TGAACCGTCTGGAGACAAAACTAAAGCTGGAGAAAGAGAAGCTGGAGA-GCAGCAGAAGG 1092 Query 1020 GCGTTGATGGATTATGGGAACGTAAGCAGCAACACCAT-CTTCTACATAATGGACAA-AG 1077 |||||| ||||||| |||||||| ||||||||||| || || || | ||||| | | Sbjct 1093 GCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTG-TATGTGATGGAGTATA- 1150 Query 1078 TCAGAGATGAGCTTGA-GAAGAAAGGC-ACAG-AGGGAGAAGAGTGGGGTCTGGGCTTAG 1134 | ||||| ||||| || ||||||||| || | || | |||||||||| || ||||||| Sbjct 1151 TGAGAGAGGAGCT-GAAGAAGAAAGGTGAC-GCAGC-ACAAGAGTGGGGACTTGGCTTAG 1207 Query 1135 CTTTCGGACCGGGAATCACTTTCGAAGGCTTTCTCAT 1171 |||||||||| |||||||| ||||||||| ||||||| Sbjct 1208 CTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCAT 1244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51122831697 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5