BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00050.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943760 jgi|Araly1|943760|scaffold_604304.1 1964 0.0
> Ahg943760 jgi|Araly1|943760|scaffold_604304.1
Length=1255
Score = 1964 bits (1063), Expect = 0.0
Identities = 1194/1254 (95%), Gaps = 22/1254 (2%)
Strand=Plus/Plus
Query 56 ATACACAGATTTTAGGATGAGCCAATGTGTTCCAAACTGTCACATCGATGATACT-C--C 112
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 9 ATACACAGA-TTTAGGATGAGCCAATGTGTTCCAAACTGTCACATCGATGATACTACGGC 67
Query 113 -G--GCAGCAGCCACCACCACCGTCCGCTCCACCACAGCCGCAGACATCCCCATATTAGA 169
| |||||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 68 AGCCGCAGCAGCCACCACCACCGTCCGCTCCATCACAGCAGCGGACATCCCCATATTAGA 127
Query 170 CTACGAGGTAGCCGAGCTGACGTGGGAGAACGGGCAACTAGGCTTGCACGGCTTAGGTCC 229
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 128 CTACGAGGTAGCCGAGCTGACGTGGGAGAACGGGCAACTGGGCTTGCACGGCTTAGGTCC 187
Query 230 ACCGCGAGTGACGGCTTCGTCGACCAAGTACTCCACAGGCGCCGGTGGAACGTTGGAGTC 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ACCGCGAGTGACGGCTTCGTCGACCAAGTACTCCACAGGCGCCGGTGGAACGTTGGAGTC 247
Query 290 GATAGTGGACCAAGCTACTCGCCTCCCTAACCCTAAGCCCACGGATGAGCTCGTCCCGTG 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GATAGTGGACCAAGCTACTCGCCTCCCTAACCCTAAGCCCACGGATGAGCTCGTCCCGTG 307
Query 350 GTTCCATCATCGCTCCTCCAGGGCCGCGATGGCAATGGACGCGCTTGTCCCTTGCTCCAA 409
|||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 308 GTTCCACCATCGCTCTTCCAGGGCCGCCATGGCCATGGACGCGCTTGTCCCTTGCTCCAA 367
Query 410 CCTAGTACACGAGCAGCAGAGCAAGCCTGGTGGCGTTGGCTCCACCCGGGTGGGGTCATG 469
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 368 CCTAGTACAGGAGCAGCAGAGCAAGCCCGGTGGCGTTGGCTCCACCCGGGTGGGGTCATG 427
Query 470 TAGCGATGGTCGTACCATGGGCGGTGGAAAACGAGCAAGAGTGGCACCGGAGTGGAGCGG 529
|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 428 TAGCGATGGTCGTACCATGGCCGGTGGAAAACGAGCCAGAGTGGCGCCGGAGTGGAGCGG 487
Query 530 CGGCGGGAGTCAGCGGCTGACCATGGACACTTACGACGTAGGTTTCACCTCAACATCAAT 589
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 488 GGGCGGGAGTCAGCGGCTGACCATGGATACTTACGACGTAGGTTTCACCTCAACATCCAT 547
Query 590 GGGCTCGCACGATAACACAATCGACGATCATGACTCCGTCTGCCACAGCCGCCCACAGAT 649
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GGGCTCGCATGATAACACCATCGACGATCATGACTCCGTCTGCCACAGCCGCCCACAGAT 607
Query 650 GGAGGACGAAGAAGAGAAGAAAGCCGGAGGAAAATCATCAGTTTCAACCAAGAGAAGCAG 709
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 608 GGAGGACGAAGAAGAGAAGAAAGCCGGAGGCAAATCATCAGTTTCAACCAAGAGAAGCAG 667
Query 710 AGCTGCTGCTATTCATAACCAATCCGAACGTAAGAGGAGAGATAAAATCAATCAAAGGAT 769
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 668 AGCTGCTGCTATTCATAACCAATCCGAACGTAAGAGGAGAGATAAGATCAATCAAAGGAT 727
Query 770 GAAGACTTTGCAAAAACTGGTTCCCAATTCCAGCAAGACGGATAAAGCATCTATGTTGGA 829
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GAAGACTTTGCAGAAACTGGTTCCCAATTCCAGCAAGACGGATAAAGCATCTATGTTGGA 787
Query 830 TGAAGTGATAGAGTATTTGAAGCAACTTCAAGCACAAGTGAGCATGATGAGCAGAATGAA 889
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGAAGTGATAGAGTACTTGAAGCAACTTCAAGCACAAGTGAGCATGATGAGCAGAATGAA 847
Query 890 TATGCCTTCTATGATGCTTCCTATGGCCATGCAGCAACAACAACAAC---TACAAATGTC 946
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 848 CATGCCTTCCATGATGCTTCCTATGGCCATGCAGCAACAACAACAACAACTACAAATGTC 907
Query 947 TCTCATGTCCAATCCCATGGGTTTAGGGATGGGCATGGGGATGCCCGGTCTCGGTCTCCT 1006
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 908 TCTCATGTCCAATCCCATGGGTTTAGGGATTGGCATGGGGATGCCCGGTCTCGGTCTCCT 967
Query 1007 CGACCTTAATTCTATGAACCGAGCTGCTGC------AAGCGCTCCTAATATCCATGCCAA 1060
|||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 968 CGACCTTAATTCTATGAACCGAGCTGCTGCTGCTGCAACCGCTCCTAATATCCATGCCAA 1027
Query 1061 CATGATGCCAAACCCATTTTTGCCCATGAATTGTCCATCGTGGGATGCTTCTTCCAATGA 1120
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct 1028 CGTGATGCCAAACCCATTTGCGCCCATGACTTGTCCATCGTGGGATGCTTCTTCCAACGA 1087
Query 1121 CTCTCGATTTCAGTCTCCTCTCATCCCCGATCCTATGTCTGCCTTTCTTGCATGCTCTAC 1180
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1088 CGCTCGATTTCAGTCTCCTCTCATTCCCGATCCTATGTCTGCCTTTCTTGCATGCTCGAC 1147
Query 1181 TCAGCCAACGACGATGGAAGCGTATAGCAGGATGGCTACATTATATCAGCAAATGCAACA 1240
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1148 TCAGCCAACGACGATGGAAGCATATAGCAGGATGGCTGCATTATATCAGCAAATGCAACA 1207
Query 1241 ACAACTTCCTCCTCCTTCGAATCCAAAATGATTATTACTCAAACACCTCTATAT 1294
||||||||||||| | ||||||||||||||||||| | || ||| |||||||
Sbjct 1208 ACAACTTCCTCCT--T-CGAATCCAAAATGATTATT--TGAA-CACGTCTATAT 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5