BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00090.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943755 jgi|Araly1|943755|scaffold_604299.1 2152 0.0
Ahg943756 jgi|Araly1|943756|scaffold_604300.1 119 8e-26
> Ahg943755 jgi|Araly1|943755|scaffold_604299.1
Length=1336
Score = 2152 bits (1165), Expect = 0.0
Identities = 1282/1339 (96%), Gaps = 6/1339 (0%)
Strand=Plus/Plus
Query 125 TAGTTATCAAACTCGAAAGATGGATTCTGTCCTTGTAGTGGGCATTGCATCGGTTATTC- 183
||||| ||||| |||||| ||||| || ||||||||||||| ||||||||| |||| ||
Sbjct 2 TAGTTGTCAAATTCGAAAAATGGAATCGGTCCTTGTAGTGGCCATTGCATCTGTTA-TCT 60
Query 184 TCGGTGCGTTGATCGCTGTACTCTTCTTCGGTAGCTACTTCCGGAAGCGGACATCGGAGG 243
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCGGTGCGTTGATCGCCGTGCTCTTCTTCGGGAGCTACTTCCGGAAGCGGACATCGGAGG 120
Query 244 TGCAATCCATGGCCAAAGCGGAGCCTCAGGATCCGATCCGGAAT-CCAAAGTCGAATCAT 302
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 121 TGCAATCAATGGCCAAAGCGGAGCCTCAGGATCCGATCCGGAATCCCAAA-TCGAATCAT 179
Query 303 CCTGCTCCGAAGAAGAATCATCCCAAATCTCAAGCGTCCGATAAGAATCAGAACAAACGG 362
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 180 CCTGCTCCCAAGAAGAATCATCCCAAATCTCAAGCGTCCGACAAGAACCAGAACAAACGG 239
Query 363 CATCATCCTTTAGATTTAAACACGTTGAAAGGCCACGGTGATGCTGTTACTGGACTCTGT 422
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CACCATCCGTTAGACTTAAACACGTTGAAAGGCCACGGTGATGCTGTTACTGGACTCTGT 299
Query 423 TTCTCGTCCGATGGAAAGAGCTTGGCCACAGCTTGCGCTGATGGAGTAATCAGGGTGTTC 482
||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 TTCTCATCCGATGGAAGGAGCTTGGCCACAGCTTGCGCTGATGGAGTGATCAGGGTGTTC 359
Query 483 AAGCTAGATGATGCATCAAGCAAAAGCTTCAAATTTTTAAGGATAAATCTTCCTGCTGGA 542
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 AAGCTAGATGATGCCTCAAGCAAAAGCTTCAAATTCTTAAGGATAAATCTTCCTGCTGGA 419
Query 543 GGACATCCAACCGCCGTGGCATTTGCTGACGATGCCTCATCTATTGTTGTGGCTTGTCAT 602
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGGCATCCAACCGCTGTGACATTTGCTGACGATGCCTCATCTATTGTTGTGGCTTGTCAT 479
Query 603 CATATGTCTGGTTCATCTTTGTACATGTACGGTGAAGATAAGCAAAAGGATCAGCAAGGG 662
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 CATATGTCTGGTTCATCTTTGTACATGTACGGTGAAGAAAAGCAAAAGGATCAGCAAGGG 539
Query 663 AAGCTTCCTCTTCCTAGTATCAAATGGGACCACCATCATATTCATGAGAAGAGATCAGTG 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 540 AAGCTTCCTCTTCCTAGTATCAAATGGGACCACCATCATATTCATGAGAAGAGAGCCGTC 599
Query 723 CTTACCATCTCTGGAGCTACTGCAACTTACGGTACTGCTGATGGAAGTGTTGTCATTGCC 782
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 600 CTTACCATCTCTGGAGCTACTGCAACTTATGGTACTGCTGATGGAAGTGCTGTCATTGCC 659
Query 783 TCTTGTTCTGAAGGGACTGATATCGTCCTTTGGCATGGGAAAACTGGGAGGAATTTGGGA 842
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 660 TCTTGTTCTGAAGGGACTGATATCATACTTTGGCATGGGAAAACTGGGAGGAATTTGGGA 719
Query 843 CATGTTGATACAAACCAGTTGAAGAACCACATGGCAGCTGTATCACCAAATGGACGTTTT 902
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 720 CATGTTGATACAAACCAGTTGAAGAACCACATGGCAGCTGTATCCCCTAATGGCCGTTTC 779
Query 903 TTGGCAGCTGCAGCATTTACTGCAGATGTGAAAGTGTGGGAAATTGTGTATCAGAAAGAT 962
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 TTGGCAGCTGCAGCATTTACTGCAGATGTGAAGGTGTGGGAAATTGTGTATCAGAAAGAT 839
Query 963 GGTTCTGTGAAAGAGGTTTCAAGAGTTATGCAACTTAAAGGCCACAAGAGTGCAGTGACT 1022
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 GGTTCTGTGAAGGAGGTTTCAAGAGTAATGCAACTTAAAGGCCACAAGAGTGCAGTGACT 899
Query 1023 TGGTTATGCTTTTCTCCAAACTCAGAGCAAATCATCACCGCTTCAAAAGATGGTTCAATA 1082
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 TGGTTATGCTTTTCTCCAAACTCAGAGAAAATCATCACCGCTTCAAAAGATGGTTCAATA 959
Query 1083 AGAGTCTGGAACATCAATGTCCGTTATCATCTTGATGAGGATCCAAAGACTTTGAAGGTG 1142
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 960 AGAGTCTGGAACATCAATGTCCGCTATCATCTTGATGAGGATCCAAAGACTTTGAAAGTG 1019
Query 1143 TTCCCGATTCCACTTTGCGACTCAGGAGGCAATCCGTTGCACTATGATCGTCTCAGCTTA 1202
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTCCCGATTCCACTGTGCGACTCAGGAGGCAATCCGTTGCACTATGATCGTCTCAGCTTA 1079
Query 1203 TGCCCAGAGGGAAAGATATTGGCAGCAAGCCATGGTTCCACATTGCAGTGGTTATGTGCT 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGCCCAGAGGGAAAGATATTGGCAGCAAGCCATGGTTCCACATTGCAGTGGTTATGTGCT 1139
Query 1263 GAAACTGGAAATGTCTTGGACACAGCTGAGAAAGCCCACGAAGGGGATATCACATGCATA 1322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAAACTGGAAATGTCTTGGACACAGCTGAGAAAGCCCACGAAGGGGATATCACATGCATT 1199
Query 1323 TCTTGGGCACCCAAGGCTATTACAGTTGGGGAAAGACATGCCATGGTTTTGGGGACATCA 1382
|||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||
Sbjct 1200 TCTTGGGCACCCAAGGCTATCACAGTTGGGGAGAGACATGCCATGGTTTTAGCCACATCA 1259
Query 1383 GGCGATGACAAGAAAGTGAAGCTGTGGGAAGCTCCAAAGTCGCAATCTTTGTAGGCTCTC 1442
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1260 GGCGATGACAAGAAAGTGAAGCTGTGGGAAGCTCCAAAGTCGCAATCTTTGTAGACTC-- 1317
Query 1443 GCATACACGTAGTCCCTTG 1461
|||||||||||||||||||
Sbjct 1318 GCATACACGTAGTCCCTTG 1336
> Ahg943756 jgi|Araly1|943756|scaffold_604300.1
Length=197
Score = 119 bits (64), Expect = 8e-26
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 18 CTCTCCATAAGCTAAGCTCTAGAAACACCGCCTTTAACGTCTCGCTGCACCATTTTTCAT 77
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 73 CTCTCCATAAGCTAAGCTCTAGAAACACCGCCATTAACGGCTCGCTGCACCATTTTTGAT 14
Query 78 CGTTGATCAGTCG 90
|||||||||||||
Sbjct 13 CGTTGATCAGTCG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5