BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00150.1
Length=2088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490555 jgi|Araly1|490555|fgenesh2_kg.6__3689__AT4G00150.1 3077 0.0
> Ahg490555 jgi|Araly1|490555|fgenesh2_kg.6__3689__AT4G00150.1
Length=2043
Score = 3077 bits (1666), Expect = 0.0
Identities = 1956/2088 (94%), Gaps = 52/2088 (2%)
Strand=Plus/Plus
Query 8 GCAAAATGATAGGAAACGGAAATAAGAGAGAAAAAGAAAGGAGGAAGCCCACTTTGCCAC 67
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCAAAATAATAGGAAACGGAAATAAGAGAGAAAAAGAAAGGAGGAAGCCCACTTTGCCAC 60
Query 68 TTTAATATCTTGCACGCATCCAATATACCTCACCACACCACATCACAACAACgaagaaga 127
||||||||||||||||||||||||||||| |||||||||||| | | ||||| || ||
Sbjct 61 TTTAATATCTTGCACGCATCCAATATACCACACCACACCACA-C-C-ACAAC-AACAA-C 115
Query 128 agaagaagaagaagagcttcaagaagaCAAATACACTATTTTTTATCGTCTGCAATGCCC 187
| |||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 116 A-AAGAAGAAGAAGAGCTCCAAGAAGACAAATACACGATTTTTGATCGTCTGCAATGCCC 174
Query 188 TTACCCTTTGAAGAGTTTCAAGGGAAGGGGATTTCTTGTTTCTCTTCTTTCTCGTCTTCC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TTACCCTTTGAAGAGTTTCAAGGGAAGGGGATTTCTTGTTTCTCTTCTTTCTCGTCTTCC 234
Query 248 TTCCCCCAACCACCGTCGTCTCCGCTTTTGAGCCACCGCAAAGCAAGAGGCGGCGAAGAA 307
|||||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 235 TTCCCCCAACCA-C--CGTCTCCGCTTTTGAGCCGCCGCAAAATAAGAGGCGGCGAAGAA 291
Query 308 GAAGA-G--GAAGAAGTTCCCGCGGCGGAGCCTACCTCTGTTCTGGACTCCCTCATAAGC 364
||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 292 GAAGAGGAAGAAGAAGTTCCCGCGGCGGAGCCTACCTCTGTTCTGGACGCCCTCATAAGC 351
Query 365 CCAACCTCTTCCTCCACGGTGTCTTCCTCTCACGGCGGAAACAGCGCCGTCGGAGGCGGC 424
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CCAACATCCTCCTCCACGGTGTCTTCCTCTCACGGCGGAAACAGCGCCGTCGGAGGCGGC 411
Query 425 GGCGACGCCACCACCGATGAGCAATGCGGAGCCATTGGGTTGGGTGATTGGGAGGAGCAA 484
|||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 412 GGCGACGCCACCACCGATGAGCAATGCGGAACCATTGGGTTGGGTGATT--G-GGAGCAA 468
Query 485 GTTCCTCATGACCACGAACAGAGCATTCTCGGACTCATCATGGGAGATTCCACAGATCCC 544
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 469 GTTCCTCATGACCACGAACAGAGCATTCTCAGACTCATCATGGGAGATTCCACAGATCCC 528
Query 545 TCTCTTGAACTCAACAGCATTCTCCAAACATCTCCCACCTTCCACGACTCTGACTACTCA 604
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 529 TCTCTTGAACTCAACAGCATTCTCCAAACCTCTCCCACCTTTCACGACTCTGACTACTCA 588
Query 605 TCACCCGGTTTCGGAGTCGTCGACACCGGCTTCGGTTTAGACCACCACTCTGTTCCGCCG 664
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 589 TCACCCGGTTTCGGAGTCGTCGATACCGGCTTCGGTTTAGACCACCACTCAGTTCCGCCG 648
Query 665 TCACATGTTTCCGGTCTTCTGATCAACCAAAGTCAAACCCACTACACACAGAATCCTGCG 724
|| || || |||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 649 TCGCACGTCCCCGGCCTTCTGATCAACCAAACTCAAACTCACTACACACAGAATCCTGCG 708
Query 725 GCTATCTTCTACGGCCACCACCACCATACACCTCCGCCGGCAAAGCGGCTCAACCCTGGT 784
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GCCATCTTCTACGGCCACCACCACCATACACCTCCGCCGGCAAAGCGGCTCAACCCTGGT 768
Query 785 CCCGTGGGGATAACAGAGCAGCTGGTTAAGGCAGCAGAGGTCATAGAGAGCGACACGTGT 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CCCGTGGGGATAACAGAGCAGCTGGTTAAGGCAGCAGAGGTCATAGAGAGCGACACGTGT 828
Query 845 CTAGCTCAGGGGATATTGGCGCGGCTCAATCAACAGCTCTCTTCTCCCGTCGGGAAGCCA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CTAGCTCAGGGGATATTGGCGCGGCTCAATCAACAGCTCTCTTCTCCCGTCGGGAAGCCA 888
Query 905 TTAGAAAGAGCAGCTTTTTACTTCAAAGAAGCTCTCAATAATCTCCTTCACAACGTCTCC 964
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 889 TTAGAAAGAGCAGCTTTTTACTTCAAAGAAGCTCTCAACAATCTCCTCCACAACGTCTCC 948
Query 965 CAAACCCTAAACCCTTATTCCCTCATCTTCAAGATCGCTGCTTACAAATCCTTCTCAGAG 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CAAACCCTAAACCCTTATTCCCTCATCTTCAAGATCGCTGCTTACAAATCCTTCTCAGAG 1008
Query 1025 ATCTCTCCCGTTCTTCAGTTCGCCAACTTTACCTCCAACCAAGCCCTCTTAGAGTCCTTC 1084
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1009 ATCTCTCCCGTTCTCCAGTTCGCCAACTTCACCTCCAACCAAGCCCTCTTAGAGTCCTTC 1068
Query 1085 CATGGCTTCCACCGTCTCCACATCATCGACTTCGATATCGGCTACGGTGGCCAATGGGCT 1144
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1069 CATGGCTTCCACCGTCTCCACATCATCGACTTCGACATCGGCTACGGTGGCCAATGGGCC 1128
Query 1145 TCCCTCATGCAAGAGCTTGTTCTCCGCGACAACGCCGCTCCTCTCTCCCTCAAGATCACC 1204
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TCTCTCATGCAGGAGCTCGTTCTCCGCGACAACGCCGCTCCTCTCTCCCTCAAGATCACC 1188
Query 1205 GTTTTCGCTTCTCCGGCGAACCACGACCAGCTCGAACTTGGCTTCACTCAAGACAACCTC 1264
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1189 GTTTTCGCTTCTCCGGGGAACCACGACCAGCTTGAACTTGGCTTCACTCAAGACAATCTC 1248
Query 1265 AAGCACTTCGCCTCTGAGATCAACATCTCCCTTGACATCCAAGTT-TTGAGCTTAGACCT 1323
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1249 AAGCACTTCGCCTCTGAGATCAACATCTCCCTTGACATCCAAGTTCTT-AGCTTAGACCT 1307
Query 1324 CCTCGGCTCCATCTCGTGGCCTAACTCGTCGGAGAAAGAAGCTGTCGCCGTTAACATCTC 1383
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CCTCGGCTCCATCTCATGGCCTAACTCGTCGGAGAAAGAAGCTGTCGCCGTTAACATCTC 1367
Query 1384 CGCCGCGTCCTTCTCGCACCTCCCTTTGGTCCTCCGTTTCGTGAAGCATCTATCTCCGAC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 CGCCGCGTCCTTCTCGCACCTCCCTTTGGTCCTCCGTTTCGTGAAGCATCTATCTCCGAC 1427
Query 1444 GATCATCGTCTGCTCCGACAGAGGATGCGAGAGGACGGATCTGCCCTTCTCTCAACAGCT 1503
|||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
Sbjct 1428 GATCATCGTCTGCTCCGACAGAGGATGCGAGAGGACGGATCTTCCCTTCCCGCAACAGGT 1487
Query 1504 CGCCCACTCGCTGCACTCACACACCGCTCTCTTCGAATCCCTCGACGCCGTCAACGCCAA 1563
||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1488 CGCACACTCGCTGCACTCACACGCCGCTCTCCTCGAATCCCTCGACGCCGTCAACGCCAA 1547
Query 1564 CCTCGACGCAATGCAGAAGATCGAGAGGTTTCTTATACAGCCGGAGATAGAGAAGCTGGT 1623
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1548 CCTCGACGCAATGCAGAAGATCGAGAGGTTTCTGATACAGCCGGAGATAGAGAAGCTGGT 1607
Query 1624 GTTGGATCGTAGCCGTCCGATAGAAAGGCCGATGATGACGTGGCAAGCGATGTTTCTACA 1683
|||||||||||||||| |||| || || |||||||||||||||||| |||||||||| ||
Sbjct 1608 GTTGGATCGTAGCCGTTCGATCGAGAGACCGATGATGACGTGGCAAACGATGTTTCTGCA 1667
Query 1684 GATGGGTTTCTCACCGGTGACGCACAGTAACTTCACGGAGTCTCAAGCCGAGTGTTTAGT 1743
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1668 GATGGGGTTCTCACCGGTGACGCACAGTAACTTCACGGAGTCTCAGGCGGAGTGTTTGGT 1727
Query 1744 CCAACGGACGCCAGTGAGAGGCTTTCACGTCGAGAAGAAACATAACTCACTTCTCCTATG 1803
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1728 TCAACGGACGCCGGTGAGAGGCTTTCACGTCGAGAAGAAACATAACTCTCTTCTCCTCTG 1787
Query 1804 TTGGCAAAGGACAGAACTCGTCGGAGTTTCAGCATGGAGATGTCGCTCCTCCTGATTTCC 1863
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1788 TTGGCAAAGGACAGAACTCGTCGGAGTTTCCGCATGGAGATGTCGCTCCTCCTGACT-CC 1846
Query 1864 ACCGGAGTTTCAATTATTaaaaa-aaTATTTTCCTTAATTCAATTTATCTTAAATGACAA 1922
|||||| ||||||||||| ||| || || | | | || |||| || | | |
Sbjct 1847 GCCGGAGATTCAATTATTACAAATAA-ATGA-CAT-A-TT---TTTAG-TT---TC-CGA 1894
Query 1923 ATTTTTAGTTTCTGATTTTATTTTGCTCAGTGCGATGGATTTTTAAATTTAAGTTTCACA 1982
|||| | ||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1895 -TTTT-A-------ATT--ATTTTGCTCAGTGCGATGGATTTT-AAATTTAAGTTTCACA 1942
Query 1983 CAAATATATAAATTTTTGTGAGA--AGTTAATTAATTGTCTGATTATCAAACACTTATTG 2040
||||| |||||||||| |||| | ||| |||||||||| ||||||||||||| |||| |
Sbjct 1943 CAAATTTATAAATTTT-GTGAAATTAGT-AATTAATTGTTTGATTATCAAACAATTATAG 2000
Query 2041 TATAACACATTCAATATATATTAATTGTGGGGATTATTTTTGATCGAC 2088
||||||||||||||| | | | |||||||||||||||||| |||||
Sbjct 2001 TATAACACATTCAAT-T-TC--A-TTGTGGGGATTATTTTTGGTCGAC 2043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78542085190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5