BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00180.1 Length=1270 Score E Sequences producing significant alignments: (Bits) Value Ahg490550 jgi|Araly1|490550|fgenesh2_kg.6__3684__AT4G00180.1 1435 0.0 > Ahg490550 jgi|Araly1|490550|fgenesh2_kg.6__3684__AT4G00180.1 Length=1109 Score = 1435 bits (777), Expect = 0.0 Identities = 964/1046 (92%), Gaps = 45/1046 (4%) Strand=Plus/Plus Query 1 AGTGTCTCTTCATATTTACATAAAT--AGA----TAtctctctctctctctctctctaaa 54 ||||||||||||||||||||||||| | | | |||||||||||||||||||||||| Sbjct 1 AGTGTCTCTTCATATTTACATAAATACAAATCTCTCTCTCTCTCTCTCTCTCTCTCTAAA 60 Query 55 ccacatcttcctctccaccgttctttctctt--c-ct-tctctctctggacttcaacttc 110 ||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| Sbjct 61 CCACATCTTCCTCTCCACCGTTCTTTCTCTTCCCTCTCTCTCTCTCTGGACTTCAACTTC 120 Query 111 tGGAGAAGTACAAGACATTTATAAAGTACTGCTCATCACCCAACACTAAACACAATTGTC 170 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 121 TGGAGAAGTACAAGACATTTATAAAGCACTGCTCATCACCCAACACT-AACACAATTGTC 179 Query 171 AAAAGGGTGTGGTGGAAGGAGAATCTACTT-CTATCTGAACATCGATCAGTCATATCTTT 229 |||| |||||||||||||||||||||| || || ||| | | | ||| | || ||| Sbjct 180 AAAA-GGTGTGGTGGAAGGAGAATCTA-TTACT-TCT-ATC-TGGAT-A-TC-GATC-AG 230 Query 230 TCAATCAAATCAAAGCCCTCCTCTCTCTCTTACTCC---TTTTTTGTTT---TAA-ATCA 282 |||||||||||||| |||| | |||||||||||||| |||||||||| || | | Sbjct 231 TCAATCAAATCAAA-CCCT-C-CTCTCTCTTACTCCTTTTTTTTTGTTTAAAAAAGAAAA 287 Query 283 AGAAAAAGACTCCATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACC 342 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 AGAAAAAGAGTCCATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACC 347 Query 343 GGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCGACACTGT 402 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 348 GGACCACTTCTCATCTTCGGAGCAGCTCTGTTACGTCCATTGCAGCTTCTGCGACACTGT 407 Query 403 CCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCA 462 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 408 CCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACCGTGACGGTGAGATGCGGCCA 467 Query 463 CTGTTCGAACCTTTTGTCGGTGACCGTGAGCATGAGAGCTCTTCTTCTTCCATCCGTTTC 522 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 468 CTGTTCGAACCTTTTGTCGGTGACTGTAAGCATGAGAGCTCTTCTTCTTCCCTCCGTTTC 527 Query 523 CAACCTTGGCCATTCCTTTTTAcctccccctcctcctcctcctcctccAAATCTTTTGGA 582 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 528 CAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTTCTCCTCCCAATCTTTTGGA 587 Query 583 GGAAATGCGAAGCGGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTC 642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 588 GGAAATGCGAAGCGGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGGTGC 647 Query 643 AGCTCACCACCCGAACG-AGCATTTGGTTATGGCGACTCGCAACGGAAGATCAGTGGATC 701 ||||||||||||||||| | | |||||||||| ||||||||||||| || |||||||| Sbjct 648 AGCTCACCACCCGAACGAATC-TTTGGTTATGCCGACTCGCAACGGTAG---AGTGGATC 703 Query 702 ATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAG 761 || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 704 ATGTGCAAGAGATGCCTCGG---CCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAG 760 Query 762 TACCATCTGCATACAACCGATTCATCAAAGAGGAGATCCAACGTATAAAGGCAGGCAACC 821 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 761 TACCATCTGCATACAACCGATTCATCAAGGAGGAGATCCAACGTATAAAGGCAGGCAACC 820 Query 822 CTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTC 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 821 CTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTC 880 Query 882 ACATACACTTTGGACTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAAC 941 ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 881 ACATACACTTTGGTCTCATGGCTGATCATCCTCCCACCAAGAAGGCTAACGTGCGCCAAC 940 Query 942 AGGAAGGAGAGGATGGGATGATGGGAAGAGA---AG--GG-TTTTACGGTTCAGCTGCCA 995 |||||||||||||| ||||||||||||||| || || |||||||| ||| |||||| Sbjct 941 AGGAAGGAGAGGATTCGATGATGGGAAGAGATCGAGAAGGCTTTTACGGCTCAACTGCCA 1000 Query 996 ACGTTGGGGTGGCCCATAACTAGCTA 1021 ||||||||||| |||||||||||||| Sbjct 1001 ACGTTGGGGTGACCCATAACTAGCTA 1026 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47463031665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5