BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00200.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490548 jgi|Araly1|490548|fgenesh2_kg.6__3682__AT4G00200.1 1157 0.0
> Ahg490548 jgi|Araly1|490548|fgenesh2_kg.6__3682__AT4G00200.1
Length=1098
Score = 1157 bits (626), Expect = 0.0
Identities = 852/954 (89%), Gaps = 43/954 (5%)
Strand=Plus/Plus
Query 408 TCAGGGAAGAAGAGGAGAGGCAGACCTCGTAAATA---TGAAGCTAATGGTGCTCCTTTG 464
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 185 TCAGGGAAGAAGAGGAGAGGCAGACCTCGTAAATATGGTGAAGCTAATGGTACTCCTTTG 244
Query 465 CCTTCTTCATCAGTTCCTCTTGTGAAGAAACGAGTAAGAGGCAAGCTCAATGGTTTTGAT 524
|||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 245 CCTTCTTCATCAACTCCTCTTCTGAAGAAACGAGCAAAAGGCAAGCTCAATGGTTTTG-- 302
Query 525 ATGAAGAAGATGCATAAGACCATTGGGTTCCATTCTTCtggtgaaaggtttggtgttggt 584
|| |||||||||||||||| || | ||||||| | | ||| | | |||
Sbjct 303 CTG-TCAAGATGCATAAGACCA-----TT-AACTCTTCTGCT-ACAGG--T-G-AAAGGT 350
Query 585 ggtggtgttggtggtggtgttggATCAAATTTCACGCCGCATGTAATCACAGTGAACACT 644
||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct 351 -TTGGCGTTGGTGGTGGTGCTGGATCAAATTTCACTCCGCATATAATCACAGTGAACACT 409
Query 645 GGTGAGGATATTACTATGAGAATCATCTCCTTTTCACAACAAGGACCACGAGCTATTTGT 704
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 410 GGTGAGGATATTACTATGAGGATTATCTCCTTTTCTCAACAAGGACCACGAGCTATTTGT 469
Query 705 ATCTTATCAGCAAATGGAGTGATATCAAACGTTACTCTTCGCCAACCCGATTCTTGCGGT 764
|| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 470 ATTTTATCAGCAAATGGAGTGATATCAAACGTCACTCTTCGCCATCCCGAATCTTGCGGT 529
Query 765 GGTACTCTCACCTACGAGGGTCGGTTTGAGATACTGTCTCTGTCTGGTTCATTCATGGAA 824
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 530 GGTACTCTCACCTACGAGGGTCGGTTTGAGATACTGTCGCTGTCTGGTTCTTTCATGGAA 589
Query 825 ACAGAGAATCAAGGTTCAAAAGGTCGGTCTGGTGGCATGAGTGTATCTTTGGCCGGTCCT 884
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 590 ACAGAGAATCAAGGTTCAAGAGGACGGTCTGGTGGCATGAGCGTATCTTTGGCAGGTCCT 649
Query 885 GATGGTCGTGTTGTCGGTGGCGGTGTCGCTGGCCTGCTCATTGCCGCCACTCCTATTCAG 944
|||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||
Sbjct 650 GATGGTCGTGTTGTCGGTGGGGGTGTGGCCGGCCTGCTCATTGCTGCCACTCCTATTCAG 709
Query 945 GTTGTTGTTGGCAGTTTTATAACGAGTGATCAACAAGATCATCAGAAACCGAGGAAGCAA 1004
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 710 GTTGTTGTTGGCAGTTTTATAACGAGTGAACAACAAGATCATCAGAAACCGAGGAAGCAA 769
Query 1005 AGAGTCGAGCATGCCCCTGCAGCAGTCATGTCAGTGcctcctcctccttctcctcctcct 1064
|||||||||||| ||||| | || | | | | | | || || |||||||||
Sbjct 770 AGAGTCGAGCATACCCCT-C--CA---A---C-G-G--TAA-CGTCATTG-CCTCCTCCT 814
Query 1065 ccGGCGGCTTCTGTTTTCTCACCGACAAACCCGGACAGAGAGCAGCCGCCATCTTCATTC 1124
||||| ||| ||||| ||| |||||||||| || ||||||||||||||||| ||||||
Sbjct 815 CCGGC---TTCAGTTTTTTCATCGACAAACCCAGAGAGAGAGCAGCCGCCATCCTCATTC 871
Query 1125 GGTATCTCCAGCTGGACCAACGGACAGGACATGCCGAGAAACTCAGCCACTGACATCAAC 1184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 GGCATCTCCAGCTGGACCAACGGACAGGACATGCCGAGAAACTCAGCCACTGACATCAAC 931
Query 1185 ATATCTTTACCAGTCGACTGAGTTTGAGTTTCCAGATGGAAGATTAGGTTTCAGATTAAC 1244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ATATCTTTACCAGCCGACTGAGTTTGAGTTTCCAGATGGAAGATTAGGTTTCAGATTAAC 991
Query 1245 TCTCTACTGTCTGTACAATGGTTAGGAGGATTGTTGAAGCTGAATGTTACTGTACGCTTT 1304
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 992 TCTCTACTGTCTGTACAATGGTTAGGAGGATTGTCGAGGCTGAATGCTACTGTACGCTTT 1051
Query 1305 TCTTTATTTTAGAACACAACTTGAGCTTCTTCTACTTTTAGGGTAACTTTCTCT 1358
|||| | |||||| || |||||||||||||||||||||||||| |||||
Sbjct 1052 -CTTT-T---AGAACATG-CT-GAGCTTCTTCTACTTTTAGGGTAACTCTCTCT 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5