BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00340.1 Length=2791 Score E Sequences producing significant alignments: (Bits) Value Ahg327738 jgi|Araly1|327738|fgenesh1_pm.C_scaffold_6002958 1879 0.0 > Ahg327738 jgi|Araly1|327738|fgenesh1_pm.C_scaffold_6002958 Length=2436 Score = 1879 bits (1017), Expect = 0.0 Identities = 1147/1211 (95%), Gaps = 4/1211 (0%) Strand=Plus/Plus Query 1393 GGAAACATCTCTAAGTCTATAATTATATTGTGCAGCGTTGTTGGGTCAATCTCAGTTCTT 1452 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1228 GGAAACATCTCTAAATCCATAATTATATTGTGCAGCGTTGTTGGGTCAATCTCAGTTCTT 1287 Query 1453 GGGTTTACATTGTTAGTGCCATTGATTCTGTTGAAGAGGAGTCGAAAGAGGAAGAAGACT 1512 ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1288 GGGATTACATTGTTGGTGCCATTGATTCTGTTGAAGAGGAGTCGGAAGAGGAAGAAGACG 1347 Query 1513 AGGAAACAAGACGAAGATGGGTTTGCTGTGTTGAATCTT-AAGGTATTTTCTTTCAAGGA 1571 |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 1348 AGGAAACAAGACGAAGATGGGTTTGCTGTGTTGAAT-TTGAAGGTCTTTTCTTTCAAGGA 1406 Query 1572 GCTTCAATCAGCTACCAATGGGTTCTCGGATAAGGTCGGACACGGCGGTTTTGGGGCGGT 1631 ||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||| || Sbjct 1407 GCTTCAAGCAGCTACCAATGGGTTTTCGGATAAGGTTGGACACGGTGGTTTTGGGGCAGT 1466 Query 1632 GTTT-AAGGGAACATTACCGGGTTCTTCTACATTCGTGGCTGTGAAACGCTTAGAAAGAC 1690 ||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||||| Sbjct 1467 -TTTCAAAGGAACATTACCGGGTTCTTCTACCTTTGTGGCCGTGAAACGCTTAGAAAGAC 1525 Query 1691 CTGGAAGCGGGGAGAGTGAGTTCCGGGCAGAGGTATGCACCATTGGGAACATTCAACATG 1750 |||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 1526 CTGGAAGCGGGGAGAGCGAGTTCCGGGCTGAGGTATGTACCATTGGCAACATTCAACATG 1585 Query 1751 TCAATCTCGTTAGGCTTAGAGGTTTCTGTTCAGAGAATCTTCATAGGCTTCTTGTCTATG 1810 ||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| | Sbjct 1586 TCAATCTCGTTAGGCTTCGGGGTTTCTGTTCAGAGAATCTTCACAGACTTCTTGTCTACG 1645 Query 1811 ATTACATGCCACAAGGATCCTTGAGTTCCTATCTGTCTAGAACAAGCCCCAAATTGCTAA 1870 |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| Sbjct 1646 ATTACATGCCACAAGGATCCCTGAGCACCTATTTGTCTAGAACAAGCCCCAAATTGCTAA 1705 Query 1871 GCTGGGAGACCCGTTTCAGGATCGCGTTAGGTACTGCCAAAGGGATCGCGTACTTGCATG 1930 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1706 ACTGGGAGACCCGTTTTAGGATCGCGTTAGGTACTGCCAAAGGGATCGCGTACTTGCATG 1765 Query 1931 AAGGATGCAGGGACTGTATTATACACTGTGATATCAAACCGGAGAACATTCTTTTGGACA 1990 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1766 AAGGATGCAGGGACTGTATTATTCACTGTGATATCAAGCCGGAGAACATTCTTTTGGACA 1825 Query 1991 GTGATTACAACGCCAAAGTGTCTGATTTTGGCTTGGCTAAGCTCCTTGGACGTGACTTCA 2050 | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1826 GCGATTACAACGCCAAAGTATCTGATTTTGGCTTGGCTAAGCTCCTTGGCCGTGACTTCA 1885 Query 2051 GCAGAGTTCTAGCCACGATGAGAGGGACATGGGGCTACGTGGCTCCCGAATGGATATCTG 2110 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1886 GCAGAGTTCTAGCCACAATGAGAGGGACATGGGGCTACGTGGCTCCTGAATGGATATCAG 1945 Query 2111 GTTTGCCCATCACGACAAAAGCTGATGTGTATAGCTTTGGAATGACATTGCTCGAGCTGA 2170 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1946 GTTTGCCCATCACAACAAAAGCTGATGTGTATAGCTTTGGAATGACATTGCTCGAGCTGA 2005 Query 2171 TCGGTGGTAGAAGAAATGTCATTGTTAATAGCGATACACTGGGAGAGAAAGAGACAGAAC 2230 |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 2006 TCGGTGGTCGAAGAAATGTCATTGTTAATAGCGATACACTTGGAGAGAAAGATACAGAAC 2065 Query 2231 CAGAGAAATGGTTCTTTCCGCCATGGGCAGCGCGTGAGATCATACAAGGCAATGTGGACT 2290 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 2066 CAGAGAAATGGTTCTTTCCGCCATGGGCAGCGCGTGAAATCATACAAGGAAATGTGGACT 2125 Query 2291 CTGTGGTTGACTCTAGACTCAACGGAGAATATAACACTGAAGAGGTGACGAGGATGGCAA 2350 ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 2126 CTGTGGTCGACTCTAGACTCAACCGAGAATATAACATTGAAGAGGTGACGAGGATGGCAA 2185 Query 2351 CGGTGGCGATATGGTGCATACAAGACAATGAAGAGATAAGGCCAGCAATGGGAACGGTAG 2410 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2186 CGGTGGCGATATGGTGCATACAAGACAATGAAGAGATAAGGCCAGCGATGGGAACGGTAG 2245 Query 2411 TGAAGATGCTTGAAGGAGTTGTGGAGGTGACGGTTCCTCCACCGCCTAAATTAATACAAG 2470 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 2246 TGAAGATGCTTGAAGGAGTTGTGGAGGTGACAGTTCCTCCACCGCCTAAATTGATACAAG 2305 Query 2471 CTCTTGTCTCCGGCGATTCATACCGAGGAGTGAGCGGCACAAGCTGTAGTGAAGGCCATG 2530 |||||||||||||||||||||||||||||||||| ||||||| |||||| ||| | | || Sbjct 2306 CTCTTGTCTCCGGCGATTCATACCGAGGAGTGAGTGGCACAACCTGTAGCGAAAGTCGTG 2365 Query 2531 GCTGTTCGGATCTCAATACAGGTTTGTCTAGCCCTGGCTCACGGTCGTCTTTTGGTAGAC 2590 |||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 2366 GCTGTTCGGATCTCAACACTGGATTGTCTAGCCCTGGCTCACGGTCGTCTTTTGGTAGAC 2425 Query 2591 CTTCTCCTTGA 2601 ||||||||||| Sbjct 2426 CTTCTCCTTGA 2436 Score = 1808 bits (979), Expect = 0.0 Identities = 1130/1202 (94%), Gaps = 14/1202 (1%) Strand=Plus/Plus Query 158 CTT-Atcttcctcttcttcttctcctcttccttc-t--tccACCA-C--CATCTGT--AC 208 ||| |||||| ||||||||||||||||||||||| | ||||| | | | ||||| | Sbjct 22 CTTCATCTTCTTCTTCTTCTTCTCCTCTTCCTTCTTCCTCCACTATCTTCTTCTGTGGAA 81 Query 209 AA-AGCAAAGTTATCATCAAAGGAAACCAAACCATTCTGAGTTTCAAAGCTATTTTCCGG 267 || | |||||||||||||||||||||||| || ||||| || |||||||||||||||||| Sbjct 82 AACAACAAAGTTATCATCAAAGGAAACCATACGATTCTCAGCTTCAAAGCTATTTTCCGG 141 Query 268 CTTGGTTTCTTCAGCACCACCAATGGTTCCTCCAATTGGTACTTGGGTATCTCTTACGCT 327 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 142 CTTGGTTTCTTCAGCACCACCAATGGTTCCTCCAATTGGTATTTGGGTATCTCTTATGCT 201 Query 328 TCTATGCCAACTCCCACCCACGTTTGGGTCGCCAATCGAATCCGACCCGTTTCGGATCCT 387 || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 202 TCCATGCCTACTCCCACCCACGTTTGGGTCGCCAATCGAATCCGACCCGTTTCCGATCCT 261 Query 388 GACTCTTCCACTCTCGAGCTCACCTCCACCGGATACCTAATCGTCAGTAACCT-CCGTGA 446 ||||||||||||||||||||||||||||||||| ||||||||||||| || || |||||| Sbjct 262 GACTCTTCCACTCTCGAGCTCACCTCCACCGGACACCTAATCGTCAG-AAACTCCCGTGA 320 Query 447 CGGCGTCGTTTGGCAGACGGATAACAAACAACCCGGAACCGATTTCCGGTTCTCTGAAAC 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 CGGCGTCGTTTGGCAGACGGATAACAAACAACCCGGAACCGATTTCCGGTTCTCTGAAAC 380 Query 507 CGGGAATCTGATTTTGATCAACGACGACGGTTCTCCGGTTTGGCAGAGCTTTGACAATCC 566 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 381 CGGGAATCTGATTTTGATCAACGACGACGGCTCTCCGGTTTGGCAGAGCTTTGATAATCC 440 Query 567 GACTGACACGTGGCTTCCGGGGATGAATGTCACCGGTCTAACAGCTATGACTTCGTGGCG 626 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 441 GACCGACACGTGGCTTCCGGGGATGAATGTCACCGGTCTAACGGCTATGACTTCGTGGCG 500 Query 627 GAGTCTCTTCGATCCTTCGCCGGGGTTTTACTCTCTGAGACTGAGTCCAAGCTTCAACGA 686 || ||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||| Sbjct 501 GACTCTGTTCGATCCTTCGCCGGGATTTTACTCCCTGAGACTGAGTCCAGGCTTCAACGA 560 Query 687 GTTCCAGCTTGTTTACAAAGGAACCACACCGTATTGGTCCACCGGAAATTGGACCGGAGA 746 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 561 GTTCCAGCTTGTTTACAAAGGAGCCACACCGTATTGGTCCACCGGAAATTGGACCGGAGA 620 Query 747 AGCCTTCGTCGGCGTTCCGGAAATGACCATTCCTTACATCTACAGGTTCCATTTCGTTAA 806 ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 621 TGCCTTCGTCGGCGTTCCAGAGATGACCATTCCATACATCTACAGGTTCCATTTCGTTAA 680 Query 807 CCCTTACACTCCCACGGCGTCGTTTTGGTACATCGTCCCACCGTTGGACTCCGTTTCCGA 866 ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 681 CCCTTACACTCCCTCGGCGTCGTTTTGGTACATCGTCCCACCGTTGGACGCCATTTCCGA 740 Query 867 GCCACGGCTGACGCGGTTCATGGTCGGCGCCAACGGCCAGCTGAAGCAGTACACTTGGGA 926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 741 GCCACGGCTGACGCGGTTCATGGTCGGCGCCAACGGCCAGCTGAAGCAGTACACTTGGGA 800 Query 927 TCCACAGACGCAGAGCTGGAACATGTTCTGGTTGCAGCCGGAGGATCCTTGCCGCGTTTA 986 |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| Sbjct 801 CCCACAGACGCAGAGCTGGAACATGTTCTGGTTTCAGCCGGAGGGTCCGTGCCGCGTTTA 860 Query 987 CAATCTCTGTGGTCAATTAGGGTTTTGTAGCAGCGAATTGCTCAAGCCCTGTGCTTGCAT 1046 || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 861 CAGTCTCTGTGGTCAATTAGGGTTTTGCAGCAGCGAATTGCTCAAGCCCTGTGCTTGCAT 920 Query 1047 CCGCGGTTTCCGGCCTAGGAACGACGCCGCGTGGAGATCTGATGATTACAGCGACGGATG 1106 |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 921 CCGCGGTTTCCGACCTAAGAACGACGACGCGTGGAGATCTGATGATTACAGCGACGGATG 980 Query 1107 CCGCCGTGAAAACGGTGATTCCGGCGAAAAGAGTGATACTTTTGAAGCCGTTGGTGATCT 1166 |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 981 CCGCCGTGAAAATGGTGATTCCGGCGAAAAGAGTGATACTTTTGAGGCGGTTGGTGATCT 1040 Query 1167 ACGCTACGATGGTGATGTGAAGATGTCACGGTTGCAGGTAAGCAAGAGCTCTTGCGCCAA 1226 || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1041 GCGGTACGACGGTGATGTGAAGATGTCGCGGTTGCAGGTAAGCAAGAGCTCTTGCGCCAA 1100 Query 1227 AACTTGCTTAGGAAACTCTTCTTGTGTTGGTTTTTATCATAAGGAGAAGTCTAATCTCTG 1286 ||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 1101 AACCTGCTTGGGAAACTCTTCTTGTGTTGGTTTTTATCATAACGAGAACTCGAATCTCTG 1160 Query 1287 CAAAATTTTACTCGAGTCGCCGAATAATC-TGAAGAATTCGAGCTCGTGGACTGGAGTTA 1345 ||||||| ||||||||||||||| ||| | |||||||||||||||| ||||||||| ||| Sbjct 1161 CAAAATTCTACTCGAGTCGCCGA-TAAACCTGAAGAATTCGAGCTCCTGGACTGGAATTA 1219 Query 1346 GT 1347 || Sbjct 1220 GT 1221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105319527425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5