BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00370.1
Length=2128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943720 jgi|Araly1|943720|scaffold_604264.1 2549 0.0
> Ahg943720 jgi|Araly1|943720|scaffold_604264.1
Length=1918
Score = 2549 bits (1380), Expect = 0.0
Identities = 1684/1816 (93%), Gaps = 80/1816 (4%)
Strand=Plus/Plus
Query 102 GATTTTCCCGCTTCAGCGTCTCTCAGTCTCTCTCTCGGCTTTATCC-AA-----A--GGT 153
|||||||||||||||||||||||||||| ||||||||||||||||| || | |
Sbjct 120 GATTTTCCCGCTTCAGCGTCTCTCAGTCCCTCTCTCGGCTTTATCCGAAGCTTTATTATT 179
Query 154 T-----CCTTCGTTTACTCCGCTTCTATGGAAGAAGCTTGAATCcttctctcttcttctt 208
| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 TCAAAACCTTCGTTTTCTCCGCTTTTATGGAAGAAGCTTGAATCCTTCTCTCTTCTTCTT 239
Query 209 ctccttcttcCCTTGACATTTTTGTTCTGAGAAGCAACATGGCCCTCGGTGGCTTGATTT 268
| || | || || | ||| ||| | || ||||||||||||||||||||||
Sbjct 240 C-CC-T-TT-CC----C---TTT-TTC---G-AG----ATGGCCCTCGGTGGCTTGATTT 279
Query 269 CAAATCGGAACTTCGGTTCCTTCATCGGCT-CAGGCAATGGTTGTCAGAGACTTGGAAAA 327
|||| |||||||| |||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 280 CAAACCGGAACTTGGGTTCCTTCATCGG-TGCAGGCGATGGTTGTCAGAGACTTGGAAAA 338
Query 328 AGTGGTGCAGAGGTTT-C--C--A---A-GCTTTTTCCAAATGCATTGTTGTGCCGTAAT 378
||| || ||||||||| | | | | |||||||||||||||||| ||||||||||||
Sbjct 339 AGTCGTTCAGAGGTTTCCAACAGAGTTATGCTTTTTCCAAATGCATTCTTGTGCCGTAAT 398
Query 379 CATCAACCTCTGCAAGCTAGTTTACATCATGAATCGGGACACATGAGAAGAAGTTTTGGA 438
|||||||||||||||||||||||||| ||||||| |||||||| | | | ||||||||||
Sbjct 399 CATCAACCTCTGCAAGCTAGTTTACAGCATGAATTGGGACACA-G-G-ACAAGTTTTGGA 455
Query 439 TGTTTCCTTCAACCAAGAATGGACAGTGTA-A-TTAGGTTTAGG---AA---C-----A- 484
||||||||||| |||||||||||| | || | ||||||||||| || | |
Sbjct 456 TGTTTCCTTCAGCCAAGAATGGAC--TCTACATTTAGGTTTAGGAACAATTTCAAGGAAT 513
Query 485 GT---AT---CAAGATCAACAGATCTCGTGCTTACTACAAATCAGAGGAGTCAGATATCA 538
|| || ||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 514 GTGGAATAAGCAAGATCAACAGATCTCGTGCTTACTACAAATCAGAGGACTCCGATATCA 573
Query 539 CGGAAGGAGTTGTGCCATCGGCTGATGGCTCAGCTGAAGCTATTTTAGTTGAAGGAAATC 598
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 574 CTGAAGGAGTTGTGCCATCGGTTGATGGCTCAGCTGAAGCTATTTTAGTTGAAGGAAATC 633
Query 599 TACAGAACGCATCTCCATGGTGGCAGCAGTTTCCTAGACGCTGGGTGATCGTCTTGTTAT 658
|||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 634 TACAGAACGCATCTCC---GT----G--GTTTCCTAGACGCTGGGTGATCGTCTTGTTAT 684
Query 659 GCTTTTCGTCTTTTCTTCTTTGCAATATGGACCGTGTGAACATGAGCATTGCAATTCTTC 718
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GCTTTGCGTCATTTCTTCTTTGCAATATGGACCGTGTGAACATGAGCATTGCAATTCTTC 744
Query 719 CCATGTCACAAGAATATAACTGGAGTAGTGCAACTGTTGGCTTAATTCAGTCCTCTTTCT 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 745 CCATGTCACAAGAATATAACTGGAGTAGTGCAACAGTTGGCTTAATTCAGTCCTCTTTCT 804
Query 779 TCTGGGGCTATTTACTTACTCAGATTCTGGGAGGTATATGGGCAGATAAGTTTGGCGGGA 838
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 805 TCTGGGGCTATTTACTTACTCAGATTCTGGGAGGCATATGGGCAGATAAGTTTGGCGGGA 864
Query 839 AGGTTGTTTTAGGTTTTGGTGTTGTCTGGTGGTCCTTTGCCACTATTATGACACCTATTG 898
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 865 AGGTGGTTTTAGGTTTTGGTGTTGTCTGGTGGTCCTTTGCCACCATTATGACACCTATTG 924
Query 899 CTGCTAGACTTGGTCTTCCTTTTTTGCTTGTAGTGCGGGCGTTCATGGGCATTGGCGAGG 958
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 925 CTGCTAGACTTGGTCTCCCTTTTTTGCTTGTCGTGCGAGCGTTCATGGGCATTGGCGAGG 984
Query 959 GTGTTGCAATGCCTGCTATGAACAACATGCTTTCTAAATGGATCCCTGTCTCAGAGAGAA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 GTGTTGCAATGCCTGCTATGAACAACATGCTTTCTAAATGGATCCCTGTCTCAGAGAGAA 1044
Query 1019 GCAGATCGCTTGCACTGGTCTATAGTGGCATGTATCTTGGTTCCGTCACAGGATTGGCAT 1078
|||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1045 GCAGATCGCTTGCACTAGTCTACAGTGGCATGTATCTTGGTTCTGTTACAGGATTGGCAT 1104
Query 1079 TCTCTCCTATGCTAAT-CACCAAGTTCGGATGGCCATCTGTTTTCTACTCGTTTGGCTCC 1137
|||||||||||||||| || |||||||||||||||||| |||||||| ||||||||||||
Sbjct 1105 TCTCTCCTATGCTAATCCA-CAAGTTCGGATGGCCATCGGTTTTCTATTCGTTTGGCTCC 1163
Query 1138 CTCGGAAGTATATGGTTTTTGCTATGGCTAAAATTTGCATATAGCTCTCCCAAGGATGAC 1197
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CTTGGAAGTATATGGTTTTTGCTATGGCTAAAATTTGCATATAGCTCTCCCAAGGATGAC 1223
Query 1198 CCGGACCTAAGTGAAGAAGaaaaaaaGGTTATACTGGGAGGTAGCAAACCAAGGGAACCT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1224 CCGGACCTAAGTGAAGAAGAAAAAAAGGTTATACTGGGAGGTAGCAAACCACGGGAACCT 1283
Query 1258 GTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCCCCAGTCTGGGCTCTCATAATT 1317
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1284 GTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCACCTGTCTGGGCTCTCATAATT 1343
Query 1318 TCCCACTTCTGCCATAATTGGGGAACTTTCATACTATTGACATGGATGCCCACATATTAC 1377
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1344 TCCCACTTCTGCCATAATTGGGGAACATTCATACTATTGACATGGATGCCCACATATTAC 1403
Query 1378 AATCAGGTCTTGAAGTTCAACCTCACTGAATCCGGGCTACTATGCGTTTTGCCATGGCTA 1437
|||||||| ||||||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct 1404 AATCAGGTTTTGAAGTTCAACCTCACTGAATCTGGGCTACTATGCGTCTTACCGTGGCTA 1463
Query 1438 ACCATGGCTGTTTTTGCTAATATTGGAGGTTGGATTGCTGATACTCTTGTGAGCAGAGGT 1497
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1464 ACCATGGCTGTTTTCGCTAATATTGGAGGTTGGATTGCTGATACTCTAGTGAGCAGAGGT 1523
Query 1498 CTTTCAATTACAAACGTTCGAAAGATTATGCAATCAATTGGTTTTCTAGGCCCTGCCTTC 1557
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1524 CTTTCAATTACAAACGTTCGAAAGATTATGCAATCAATTGGTTTTCTAGGTCCTGCCTTC 1583
Query 1558 TTCCTGAGTCAGCTGAGCCATGTCAAAACTCCAGCAATGGCAGTTCTCTGCATGGCATGC 1617
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1584 TTCCTGAGTCAGCTGAGCCATGTCAAAACTCCAGCAATGGCGGTTCTCTGCATGGCATGC 1643
Query 1618 AGTCAGGGCTCTGATGCATTCTCTCAGTCGGGTCTCTACTCTAATCATCAAGACATTGGC 1677
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 AGTCAGGGGTCTGATGCATTCTCTCAGTCGGGTCTCTACTCTAATCATCAAGACATTGGC 1703
Query 1678 CCACGATACGCTGGTGTACTCTTAGGACTATCAAACACAGCAGGAGTCCTAGCTGGTGTC 1737
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1704 CCACGATACGCTGGTGTACTCTTAGGACTATCAAACACAGCAGGAGTCCTCGCTGGTGTC 1763
Query 1738 TTTGGCACTGCAGCTACTGGTTACATCCTCCAACGAGGTTCATGGGATGATGTGTTCAAA 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 TTTGGCACTGCAGCTACTGGTTACATCCTCCAACGAGGTTCATGGGATGATGTGTTCAAA 1823
Query 1798 GTAGCAGTTGCACTGTATCTAATTGGAACTCTGGTCTGGAACTTGTTCGCAACCGGAGAA 1857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 GTAGCAGTTGCACTGTATCTAATTGGAACTCTGGTCTGGAACTTGTTCGCAACCGGAGAG 1883
Query 1858 AAAATTCTCGACTAGA 1873
||||||||||||||||
Sbjct 1884 AAAATTCTCGACTAGA 1899
Score = 95.3 bits (51), Expect = 2e-18
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 25 CAACGAGTAGAAGATGATGTGCCACGTGTCACTATATCGACCCCCCTTTCCTCT 78
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 66 CAACGAGTAGAAGATGATGAGCCACGTGTCACTATATCGACCCCCCTTTCCTCT 119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80065694990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5