BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00430.1
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943716 jgi|Araly1|943716|scaffold_604260.1 1502 0.0
Ahg492536 jgi|Araly1|492536|fgenesh2_kg.7__1969__AT4G23400.1 652 0.0
> Ahg943716 jgi|Araly1|943716|scaffold_604260.1
Length=987
Score = 1502 bits (813), Expect = 0.0
Identities = 924/976 (95%), Gaps = 14/976 (1%)
Strand=Plus/Plus
Query 79 agaggg-agagggagagaaatggaaggcaaagaagaagaTGTACGAGTGGGAGCTAACAA 137
|||||| ||| || | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 11 AGAGGGTAGA-GG-GTGAAATGGAAGGCAAAGAAGAAGATGTTCGAGTGGGAGCTAACAA 68
Query 138 GTTCCCGGAGAGGCAACCCATCGGTACATCGGCTCAGTCCACCGACAAGGACTACAAAGA 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GTTCCCGGAGAGGCAACCCATCGGTACATCGGCTCAGTCCACCGACAAGGACTACAAAGA 128
Query 198 GCCACCTCCTGCGCCACTGTTCGAGCCCGGCGAGCTCAGCTCATGGTCTTTCTACAGAGC 257
|||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 129 GCCACCCCCTGCACCACTGTTCGAGCCCGGCGAGCTGAGCTCATGGTCCTTCTACAGAGC 188
Query 258 CGGAATAGCTGAGTTTATCGCTACTTTCTTGTTTCTCTACATCACTGTTTTGACTGTAAT 317
|||||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 189 CGGAATTGCTGAGTTCATTGCTACTTTCCTGTTTCTCTACATCACTGTCTTGACTGTAAT 248
Query 318 GGGAGTTAAGAGAGCACCAAACATGTGTGCTTCTGTTGGAATCCAAGGTATCGCTTGGGC 377
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 249 GGGAGTGAAGAGAGCACCAAACATGTGTGCTTCTGTTGGAATCCAAGGCATCGCTTGGGC 308
Query 378 TTTTGGTGGCATGATCTTTGCTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACACAT 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTTTGGTGGCATGATCTTTGCTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACACAT 368
Query 438 CAACCCTGCTGTAACATTCGGTCTGTTCTTGGCTCGGAAGTTATCTCTGACCAGAGCAGT 497
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 369 CAACCCTGCGGTTACATTCGGTCTGTTCTTGGCTCGGAAGTTGTCTCTGACCAGAGCTGT 428
Query 498 GTTCTACATGATTATGCAATGTCTTGGAGCCATCTGTGGTGCCGGAGTCGTCAAAGGTTT 557
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 429 GTTCTACATGATTATGCAATGTCTCGGAGCCATCTGTGGTGCTGGAGTCGTCAAGGGCTT 488
Query 558 CCAGCCAACGCCGTACCAGACTCTCGGTGGTGGTGCTAACACCGTTGCTCATGGCTACAC 617
|||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 489 CCAGCCAACGCCTTACCAGACTCTCGGTGGCGGTGCTAACACCGTCGCTCACGGCTACAC 548
Query 618 CAAAGGTTCTGGCCTTGGTGCTGAAATCATCGGAACATTCGTTCTCGTCTACACTGTCTT 677
||| |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 549 CAAGGGTTCTGGACTCGGTGCTGAAATCATCGGAACCTTCGTTCTCGTCTACACCGTCTT 608
Query 678 CTCCGCCACCGACGCCAAGAGAAGCGCCCGTGACTCACACGTCCCGATTTTGGCGCCGCT 737
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 609 CTCCGCCACCGACGCCAAGAGAAGCGCCCGTGACTCACACGTTCCGATTTTGGCGCCACT 668
Query 738 CCCAATCGGATTTGCAGTGTTCTTGGTACACTTGGCAACAATACCGATCACCGGGACCGG 797
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 669 CCCAATCGGATTTGCAGTGTTCTTGGTACACTTGGCAACAATTCCGATCACCGGGACCGG 728
Query 798 AATCAACCCAGCTAGAAGTCTTGGAGCCGCAATTATCTACAACAAGGACCACTCTTGGGA 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AATCAACCCAGCTAGAAGTCTTGGAGCCGCAATTATCTACAACAAGGACCACTCTTGGGA 788
Query 858 TGACCATTGGATTTTCTGGGTTGGACCATTCATTGGAGCAGCTCTAGCAGCACTATATCA 917
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 789 CGACCATTGGATTTTCTGGGTTGGACCATTCATTGGAGCAGCTCTAGCAGCACTCTATCA 848
Query 918 CCAGATTGTCATCAGAGCGATTCCTTTCAAGAGCAAGAGTTAGAGACACACAGAAAGATT 977
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||
Sbjct 849 CCAGATTGTCATCAGAGCGATTCCTTTCAAGAGCAAGAGTTAGA-ACA-A-AGA----TT 901
Query 978 CCACGGTCCAGAATTTGTTCTTT-AGTAGTTTCTTTGCTTATCTATCTAATGTAGCTT-- 1034
||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||
Sbjct 902 CCACGGTCCAGAATTTGTTCTTTTAGTAATTTCTTTGCTTATCTATCTACTCTAGCTTCT 961
Query 1035 -GTGTTTTGCAATGTA 1049
|||||||||||||||
Sbjct 962 TGTGTTTTGCAATGTA 977
> Ahg492536 jgi|Araly1|492536|fgenesh2_kg.7__1969__AT4G23400.1
Length=1105
Score = 652 bits (353), Expect = 0.0
Identities = 702/871 (81%), Gaps = 22/871 (3%)
Strand=Plus/Plus
Query 90 gagag-aa-atggaaggcaaagaagaagaTGTACG-A-GTGGGAGCTAACAAGTTCCCGG 145
||||| || ||||| || ||||||||||| || | | || ||||| |||||||||||||
Sbjct 17 GAGAGAAACATGGAGGGAAAAGAAGAAGACGT--GAATGTCGGAGCCAACAAGTTCCCGG 74
Query 146 AGAGGCAACCCATCGGTACATCGGCTCAGTCCACCGA-CAAGGACTACAAAGAGCCACCT 204
||||||| || |||||||| |||| ||| || || |||||||||||| || ||||||
Sbjct 75 AGAGGCAGCCGATCGGTACGGCGGCGCAG-ACAGAGAGCAAGGACTACAAGGAACCACCT 133
Query 205 CCTGCGCCACTGTTCGAGCCCGGCGAGCTCAGCTCATGGTCTTTCTACAGAGCCGGAATA 264
|| ||||| | ||||| ||||||||||||| || |||||||| |||||||| || |||
Sbjct 134 CCGGCGCCGTTTTTCGAACCCGGCGAGCTCAAATCTTGGTCTTTTTACAGAGCAGGCATA 193
Query 265 GCTGAGTTTATCGCTACTTT-CTTGTTTCTCTACATCACTGTTTTGACTGTAATGGGAGT 323
|||||||| || || ||||| ||| || |||||| |||| |||||||| || ||||| ||
Sbjct 194 GCTGAGTTCATAGCCACTTTCCTT-TTCCTCTACGTCACCGTTTTGACAGTCATGGGCGT 252
Query 324 TAAGAGAGCACCAAAC-ATGTGTGCTTCTGTTGGAATCCAAGGTATCGCTTGGGCTTTTG 382
||||||||| || || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 253 TAAGAGAGCTCC-TACTATGTGTGCCTCTGTTGGAATCCAAGGCATCGCTTGGGCTTTTG 311
Query 383 GTGGCATGATCTTTGCTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACACATCAACC 442
|||||||||||||||||||||| || |||||||||||||| ||||| ||||| || || |
Sbjct 312 GTGGCATGATCTTTGCTCTTGTTTATTGTACTGCTGGAATCTCAGGAGGACATATTAATC 371
Query 443 CTGCTGTAACATTCGGTCTGTTCTTGGCTCGGAAGTTATCTCTGACCAGAGCAGTGTTCT 502
| || || || || ||| |||||||||| ||||||| ||| | |||||||| ||||||
Sbjct 372 CGGCAGTGACTTTTGGTTTGTTCTTGGCGAGGAAGTTGTCTTTAACCAGAGCTCTGTTCT 431
Query 503 ACATGATTA-TGCAATGTCTTGGAGCCATCTGTGGTGCCGGAGTCGTCAAAGG-TTTCCA 560
|||| | || |||| || |||||||| || |||||||| || || || ||||| |||| |
Sbjct 432 ACAT-AGTAATGCAGTGCCTTGGAGCTATTTGTGGTGCTGGTGTGGTTAAAGGGTTTCAA 490
Query 561 GCCAACGCCGTACCAGACTC-TCGGTGGTGGTGCTAACACCGTTGCTCATGGCTACACCA 619
||| || |||||||| | || ||||| || || || |||||||| ||||| |
Sbjct 491 -CCAGGGCTTTACCAGACGAAT-GGCGGTGGAGCAAATGTGGTGGCTCATGGTTACAC-A 547
Query 620 AAGG-TTCTGGCCTTGGTGCTGAAATCATCGGAACATTCGTTCTCGTCTACACTGTCTTC 678
|||| ||| || |||||||| || || | ||||| || ||||| || |||||||| |||
Sbjct 548 AAGGGTTCAGGTCTTGGTGCAGAGATTGTTGGAACTTTTGTTCTGGTTTACACTGTTTTC 607
Query 679 TCCGCCACCGACGCCAAGAGAAGCGCCCGTGACTCACACGTCCCGATTTTGGCGCCGCTC 738
|| || || || || |||||||| ||| | ||||| || ||||| || ||||| |||||
Sbjct 608 TCAGCTACTGATGCTAAGAGAAGTGCCAGAGACTCTCATGTCCCTATCTTGGCTCCGCTT 667
Query 739 CCAATCGGATTTGCAGTGTTCTTGGTACACTTGGCAACAATACCGATCACCGGGACCGGA 798
||||| || ||||| || |||||||| |||||||| || || || ||||| || || ||
Sbjct 668 CCAATTGGGTTTGCTGTCTTCTTGGTGCACTTGGCTACCATCCCAATCACTGGAACTGGC 727
Query 799 ATCAACCCAGCTAGAAGTCTTGGAGCCGCAATTATCTACAACAAGGACCACT-CTTGGGA 857
|| ||||| || || ||||| ||||| || || ||||||||||||| || | |||||||
Sbjct 728 ATTAACCCGGCCAGGAGTCTCGGAGCTGCCATCATCTACAACAAGGGTCA-TGCTTGGGA 786
Query 858 TGACCATTGGATTTTCTGGGTTGGACCATTCATTGGAGCAGCTCTAGCAGCACTATATCA 917
||||||||||||||||||||| || |||||||| || || || || || || || || ||
Sbjct 787 TGACCATTGGATTTTCTGGGTCGGTCCATTCATCGGTGCTGCGCTTGCTGCTCTGTACCA 846
Query 918 CCAGATTGTCATCAGAGCGATTCCTTTCAAG 948
||||| ||||||||||| ||||||||||||
Sbjct 847 TCAGATAGTCATCAGAGCTATTCCTTTCAAG 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61972828615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5