BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00550.1
Length=1891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490510 jgi|Araly1|490510|fgenesh2_kg.6__3644__AT4G00550.1 2340 0.0
> Ahg490510 jgi|Araly1|490510|fgenesh2_kg.6__3644__AT4G00550.1
Length=1668
Score = 2340 bits (1267), Expect = 0.0
Identities = 1444/1527 (95%), Gaps = 21/1527 (1%)
Strand=Plus/Plus
Query 227 TCAACTCAAAGATTGTTTCTGAATTGGAATCTTACAGAGGTTTAGCTTGAGATGATATGA 286
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 42 TCAATTCAAAGATTGTTTCTGAATTGGAATCCTACAGAGGTTTAGCTTGAGATGATATGA 101
Query 287 CTAATCAGCAG--G-AGCAACACATTGCGATATTTACAACAGCTAGTATTCCATGGCTTA 343
| || |||||| | ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 102 CGAAGCAGCAGCAGCAGCAACACATTGCCATATTTACCACAGCTAGTATTCCATGGCTTA 161
Query 344 CGGGAACTGCTGTTAATCCTCTCTTCCGTGCTGCCTACCTTGCAAATGATGGGGAAAGAC 403
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 162 CGGGAACTGCTGTTAATCCTCTTTTCCGTGCTGCCTACCTTGCAAATGACGGGGAAAGAC 221
Query 404 GGGTCACGTTGGTGATTCCATGGCTGACTTTGAAGCACCAAAAGCTTGTCTACCCAAATA 463
||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 222 GGGTCACTTTAGTGATTCCATGGCTGACAGTGAAGCACCAAAAGCTTGTCTACCCAAATA 281
Query 464 GCATCACTTTTAGTTCCCCGTCAGAGCAAGAAGCTTATGTCCGCCAGTGGCTTGAGGAGA 523
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 282 GCATCACTTTTAGTTCCCCATCAGAGCATGAAGCTTATGTCCGCCACTGGCTTGAGGAGA 341
Query 524 GAGTCTCTTTTCGTTTAGCCTTTGAGATACGTTTCTATCCTGGAAAGTTTGCTATTGACA 583
||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 342 GAGTCTCATTTCCTTTAGGCTTTGAGATACGTTTCTATCCTGGAAAGTTTGCTACGGACA 401
Query 584 AAAGGAGTATTCTTCCTGTTGGGGATATATCTGATGCCATTCCTGATGAAGAGGCAGACA 643
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 AAAGAAGTATTCTTCCTGTTGGGGATATATCTGATGCCATTCCTGATGAAGAGGCAGACA 461
Query 644 TTGCTGTCCTCGAGGAGCCTGAGCATCTCACATGGTTTCATCATGGCCAAAAATGGAAAA 703
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 462 TTGCTGTCCTCGAGGAGCCTGAGCATCTCACATGGTTTCATCATGGCAAAAAATGGAAAA 521
Query 704 CTAAGTTCAACTACGTCATAGGAATCGTACACACTAACTACTTGGAATACGTTAAAAGAG 763
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 522 CTAAGTTCAACTACGTCATAGGAATCGTACACACCAACTACTTGGAATACGTAAAAAGAG 581
Query 764 AGAAACAAGGCCGTGTCAAAGCATTTT-TCCTCAAATACTTAAATAGTTGGGTTGTTGGC 822
||||||||||||| |||||||| |||| ||||||| |||||||| |||||||||||||||
Sbjct 582 AGAAACAAGGCCGCGTCAAAGC-TTTTCTCCTCAAGTACTTAAACAGTTGGGTTGTTGGC 640
Query 823 ATTTACTGCCACAAGGTAATCAGGTTATCTGCTGCGACTCAAGAATACCCTAAATCTATA 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 ATTTACTGCCACAAGGTAATCAGGTTATCTGCTGCGACTCAAGAATACCCTAAATCTATA 700
Query 883 GTCTGCAATGTTCATGGCGTCAACCCTAAATTTCTCGAAATTGGGTTGAGAAAACTAGAA 942
|||||||| |||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 701 GTCTGCAACGTTCATGGTGTCAACCCTAAGTTTCTGGAGATTGGGTTGAGAAAACTAGAA 760
Query 943 CAGCAGAAGCTCCAGGAGCAGCCCTTCACTAAAGGCGCATACTACATTGGTAAGATGGTC 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 CAGCAGAAGCTCCAGGAGCAGCCCTTCACTAAAGGCGCATACTACATTGGTAAGATGGTC 820
Query 1003 TGGAGCAAAGGGTACAAGGAGCTTCTTAAACTACTTGAGAAACACCAAAAGGAACTTGCC 1062
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 821 TGGAGCAAAGGGTACAAGGAGCTTCTTAAACTACTTGAGAAACACCAAAAGGAACT--CC 878
Query 1063 --GAGTTAGAGGTTGATTTATACGGTGATGGAGAGGACTCTGAAGAGATCAAAGAAGCAG 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TTGAGTTAGAGGTTGATTTATACGGTGATGGAGAGGACTCTGAAGAGATCAAAGAAGCAG 938
Query 1121 CCCGAAAACTCGACTTGACGGTTAATGTTTACCCAGGACGTGATCACGCTGACTCGCTAT 1180
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 939 CCCGAAAACTCGAGTTGACGGTTAATATTTACCCAGGACGTGATCACGCTGACTCACTAT 998
Query 1181 TTCACAACTATAAAGTGTTTCTCAACCCCAGCACGACAGACGTTGTGTGTACAACAACTG 1240
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 999 TTCACAACTATAAAGTGTTTCTCAACCCCAGCACGACCGACGTTGTCTGCACAACAACTG 1058
Query 1241 CAGAAGCCTTGGCGATGGGAAAAATAGTAGTATGCGCGAATCACATATCGAACAAGTTCT 1300
||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 1059 CAGAAGCCTTGGCGATGGGAAAAATCGTAGTGTGCGCGAATCACATATCGAACGAGTTCT 1118
Query 1301 TCAAACAGTTTCCCAACTGCAGAACCTATGACGATGGACAAGGTTTTGTAAGAGCCAC-G 1359
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 1119 TCAAACAGTTTCCCAACTGCAGAACCTATGACGATGGAAAAGGTTTTGTTAGAGCCACAG 1178
Query 1360 CTCAAGGCTCTTGGGGAACAACCATCGCAACTTACAGAGCAACAAAGGCATGAACTATCA 1419
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1179 -TCAAGGCTCTTGGGGAACAACCATCGCAACTAACAGAGCAACAGAGGCATGAACTATCA 1237
Query 1420 TGGGAAGCTGCTACACAACGGTTTATAAAAGTCTCTGATCTGAACCGGTTATCAAGAGCT 1479
|||||||||||||||||||| |||||||||| || |||||||| |||||||||||||||
Sbjct 1238 TGGGAAGCTGCTACACAACGATTTATAAAAGCCTGTGATCTGAGCCGGTTATCAAGAGCA 1297
Query 1480 GATTCGAACTTGTCAAAGAGAAGTGTGTTTGCGTCATCTTCGATTAGTGTGGGGAAAAAC 1539
|| || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 GAATCAAACTTATCAAAGAAAAGTGTGTTTGCGTCATCTTCGATTAGTGTGGGGAAAAAC 1357
Query 1540 TTGGAGGATATGTCAGCGTATATTCATTTCTTGGCGTCTGGATTTGAAGCTTCCAGAACA 1599
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1358 TTGGAGGATATGTCTGCGTATATTCATTTCTTGGCGTCTGGATTTGAAGCTTCAAGAACA 1417
Query 1600 GCTTTTGGTGCTATACCTGGAAGCTTGCAGCCCGATGAAGAGTTATGTAGAGATCTTGGT 1659
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1418 GCTTTTGGTGCTATACCAGGAAGCTTGCAGCCTGATGAAGAGTTGTGCAGAGATCTTGGT 1477
Query 1660 TTGTCTCTCAACACTCCTTCCCCAAATACTCGCAAGCAAGATTGACC-T--G--T-TTT- 1712
||||||||||||||| ||||||||||||||||||||||||||||||| | | | |||
Sbjct 1478 TTGTCTCTCAACACTTCTTCCCCAAATACTCGCAAGCAAGATTGACCGTTTGACTGTTTC 1537
Query 1713 TTAATTTATCTTTGTCTGCATATCATT 1739
||| ||||||||||| || | ||||||
Sbjct 1538 TTATTTTATCTTTGT-TG-A-ATCATT 1561
Score = 126 bits (68), Expect = 5e-28
Identities = 103/119 (87%), Gaps = 5/119 (4%)
Strand=Plus/Plus
Query 1775 TGAATCATTCTATAGCA-GCTTTGGTGTAATAT-TGATGATGAAAGTTAGATTTTTCATC 1832
||||||||||||| ||| || | | | |||| | | |||||||||||||||||||||
Sbjct 1553 TGAATCATTCTATGGCATACTAT-ATAT-ATATGTTAACATGAAAGTTAGATTTTTCATC 1610
Query 1833 TTGTGGAACATGTATGATGACACGAGTCTGAATTATAAAATTTAGTATATGATTCCATT 1891
||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||
Sbjct 1611 TTGTGGAACATGTATGATGACACAAGTCTGA-TCATAAAATTTAGTATTTGATTCCATT 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71038306925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5