BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00750.1
Length=2122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490494 jgi|Araly1|490494|fgenesh2_kg.6__3628__AT4G00750.1 3208 0.0
Ahg473493 jgi|Araly1|473493|fgenesh2_kg.1__3447__AT1G33170.1 163 4e-39
> Ahg490494 jgi|Araly1|490494|fgenesh2_kg.6__3628__AT4G00750.1
Length=2065
Score = 3208 bits (1737), Expect = 0.0
Identities = 1974/2086 (95%), Gaps = 25/2086 (1%)
Strand=Plus/Plus
Query 1 ATCACATATTTTGTGAAATCCCAAAGAAAGTTTTTGCTTTCACCGGCCAGTCATGGGAAA 60
||||||||||||||||||| || |||||||||||| ||||| |||||||||||||| |||
Sbjct 1 ATCACATATTTTGTGAAATTCCGAAGAAAGTTTTTTCTTTCTCCGGCCAGTCATGGCAAA 60
Query 61 CTATCGGTGGCCGTCAAAGCTATCAAAGTTATCACTCAGAGCAAAACAAACGAATCTGTA 120
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 61 CTATCGGTGGCCGTCAAAGCTATCGAAGTTATCACTCAGAGCAAAACATACGAATCTATA 120
Query 121 CCGCGTCATTCTAATCGCGATCCTCTGCGTCACCTTTTACTTCGTCGGAGTATGGCAACA 180
|||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||
Sbjct 121 CCGCGTCATTCTAATCGCGATCCTTTGCGCCGCCTCATACTTCGTCGGAGTATGGCAACA 180
Query 181 CTCCGGCAGAGGAATCTCACGCTCTTCCATTTCTAACCACGAGCTCACGTCCGTGCCCTG 240
||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 181 CTCCGGCGGAGGAATTTCACGCTCTTCCCTTTCCAACCACGAGCTCACGTCCGTGCCCTG 240
Query 241 CACGTTTCCTCACCAAACCACACCGATTCTCAACTTCGCCTCCCGTCACACAGCCCCTGA 300
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 241 CACGTTTCCTCACCAAACCACACCGATTCTCAACTTCGCCGCCAGTCACACAGCCCCTGA 300
Query 301 CCTTCCTCCGACGA-TAACGGAC-GCGCGTGTTGTTCAAATCCCGTCGTGCGGCGTTGAA 358
|| ||||||||| | || | | |||||||||| ||||||||| |||||||||||||||
Sbjct 301 CCCTCCTCCGAC-AGCGACAG-CGGCGCGTGTTGCTCAAATCCCATCGTGCGGCGTTGAA 358
Query 359 TTCTCGGAGTACACGCCCTGCGAGTTCGTGAATCGGTCTTTGA-ATTTCCCAAGAGAGAG 417
||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct 359 TTCTCGGAGTACACGCCGTGCGAGTTCGTGAATCGGTCATT-ACATTTCCCAAGAGAGCG 417
Query 418 GCTTATATACAGAGAGAGACACTGTCCGGAAAAACACGAGATAGTCAGGTGTCGGATTCC 477
|||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 418 GCTTATATACAGAGAGAGACACTGTCCGAAAAAACACGAGATACTCCGGTGTCGGATTCC 477
Query 478 AGCGCCGTACGGTTACA-GTTTACCTTTTCGGTGGCCGGAGAGCCGTGACGTGGCGTGGT 536
||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct 478 AGCGCCGTACGGTTACACG-GTACCTTTCCGGTGGCCGGAGAGCCGTGACGTGGCGTGGT 536
Query 537 TTGCTAACGTGCCGCATACGGAACTAACGGTGGAGAAGAAGAATCAGAACTGGGTAAGGT 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 TTGCTAACGTGCCGCATACGGAACTAACGGTGGAGAAGAAGAATCAGAACTGGGTATGGT 596
Query 597 ATGAGAAGGATAGGTTTTTATTTCCTGGTGGTGGTACGATGTTTCCACGTGGAGCTGATG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATGAGAAGGATAGGTTTTTATTTCCTGGTGGTGGTACGATGTTTCCACGTGGAGCTGATG 656
Query 657 CTTACATCGACGAGATCGGACGGTTGATAAATCTCAAAGATGGATCAATTCGGACAGCCA 716
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 657 CTTACATCGACGAGATCGGACGGTTGATAAATCTCAAAGACGGATCAATTCGGACAGCCA 716
Query 717 TTGATACTGGATGTGGGGTAGCGAGCTTTGGGGCGTATCTAATGTCGAGGAACATAGTAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTGATACTGGATGTGGGGTAGCGAGCTTTGGGGCGTATCTAATGTCGAGGAACATAGTAA 776
Query 777 CGATGTCGTTTGCACCAAGAGACACACACGAAGCTCAGGTTCAGTTCGCACTTGAGAGAG 836
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 777 CGATGTCGTTTGCACCAAGAGACACACACGAAGCTCAAGTTCAGTTCGCACTTGAGAGAG 836
Query 837 GAGTCCCTGCCATCATAGGAGTGTTAGCCTCTATTAGGCTCCCATTTCCGGCCAGAGCCT 896
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 837 GAGTCCCTGCGATCATAGGAGTGTTAGCCTCTATCAGACTCCCATTTCCGGCCAGAGCCT 896
Query 897 TCGACATTGCTCATTGCTCTCGATGTCTCATTCCTTGGGGCCAATACAACGGGACGTATC 956
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 897 TCGACATTGCTCATTGCTCTCGATGTCTCATTCCTTGGGGCCAATACAATGGGACGTATC 956
Query 957 TCATAGAAGTGGATAGGGTACTGAGACCgggggggTATTGGATTTTGTCGGGACCGCCGA 1016
| ||||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct 957 TGATAGAGGTGGATAGGGTACTGAGACCGGGTGGGTATTGGATTCTGTCTGGACCGCCGA 1016
Query 1017 TTAACTGGCAGAGACACTGGAAGGGTTGGGAAAGAACTAGAGACGATCTCAACTCGGAGC 1076
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1017 TTAACTGGCAGAGACATTGGAAGGGTTGGGAGAGAACCAGAGACGATCTCAACTCGGAGC 1076
Query 1077 AGTCTCAGATCGAGAGGGTGGCTAGGAGCTTGTGTTGGAGGAAATTGGTGCAGAGAGAGG 1136
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1077 AGTCTCAGATCGAGAGGGTCGCTAGGAGCTTGTGTTGGAAGAAATTGGTGCAGAGAGAGG 1136
Query 1137 ATCTTGCGGTTTGGCAGAAACCTACCAACCATGTTCACTGTAAGCGCAATCGGATAGCTT 1196
|||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1137 ATCTTGCGGTATGGCAGAAACCCACCAACCATATTCACTGTAAGCGCAATCGGATAGCTT 1196
Query 1197 TAGGACGCCCTCCGTTCTGCCACCGGACACTACCCAACCAGGGCTGGTACACTAAGCTTG 1256
|| ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 1197 TAAGACGCCCTCCGTTCTGCCACCAGACACTACCCGACCAGGCCTGGTACACTAAGCTTG 1256
Query 1257 AAACCTGTTTGACGCCGTTGCCGGAAGTAACAGGATCTGAGATCAAAGAAGTAGCGGGTG 1316
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1257 AAACCTGTTTGACACCGCTGCCGGAAGTAACAGGATCTGAGATCAAAGAAGTAGCAGGTG 1316
Query 1317 GACAGTTGGCGAGATGGCCTGAGAGATTGAATGCTCTTCCTCCGAGGATCAAAAGTGGAA 1376
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1317 GACAGTTGGCAAGATGGCCTGAGAGATTGAATGCTGTTCCTCCGAGGATCAAAAGTGGAA 1376
Query 1377 GCTTGGAAGGGATCACTGAGGATGAATTTGTCAGCAACACAGAGAAATGGCAGAGAAGAG 1436
||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 1377 GCTTGGAAGGGATCACTGAGGATGACTTAGTCAGCAACACAGAGACATGGCAGAGAAGAG 1436
Query 1437 TGTCTTACTACAAGAAATATGACCAACAGCTAGCGGAGACGGGAAGATACAGAAACTTTC 1496
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1437 TGTCTTACTACAAGAAATATGACCAGCAGCTAGCGGAGACGGGAAGATACAGAAACTTAC 1496
Query 1497 TCGACATGAACGCTCATCTTGGAGGTTTCGCCTCAGCCTTAGTCGATGATCCTGTATGGG 1556
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1497 TTGACATGAACGCTCATCTTGGGGGTTTCGCCTCAGCCTTAGTCGATGATCCTGTGTGGG 1556
Query 1557 TCATGAATGTTGTCCCCGTGGAGGCCAGTGTTAACACCCTTGGAGTTATCTATGAGCGAG 1616
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1557 TCATGAACGTTGTCCCCGTGGAGGCCAGTGTCAACACCCTTGGAGTTATCTATGAGCGAG 1616
Query 1617 GATTGATTGGAACGTATCAAAACTGGTGTGAAGCAATGTCAACTTACCCAAGGACATACG 1676
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1617 GGTTGATTGGAACGTATCAAAACTGGTGTGAAGCAATGTCAACTTACCCAAGAACGTACG 1676
Query 1677 ATTTCATCCATGCCGATTCGGTGTTCAGTCTGTACAAAGACAGATGTGACATGGAAGATA 1736
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ATTTCATCCATGCCGATTCAGTGTTCAGTCTGTACAAAGACAGATGTGACATGGAAGATA 1736
Query 1737 TCTTGCTAGAAATGGACAGGATTCTAAGACCAAAGGGAAGCGTGATCATCAGAGACGACA 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TCTTGCTAGAAATGGACAGGATTCTAAGACCAAAGGGAAGCGTGATCATCAGAGACGACA 1796
Query 1797 TTGATGTGCTAACCAAAGTGAAGAAGATTACAGATGCGATGCAATGGGAAGGGAGGATAG 1856
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1797 TTGATGTGTTAACCAAAGCGAAGAAGATTACAGATGCGATGCAATGGGAAGGGAGAATAG 1856
Query 1857 GAGATCATGAAAACGGACCTCTTGAAAGAGAGAAGATTTTGTTTCTTGTGAAGGAGTACT 1916
|||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1857 GAGATCATGAGAACGGACCTCTTGAAAGGGAGAAGAGTTTGTTTCTTGTGAAGGAGTACT 1916
Query 1917 GGACCGCACCTGCGCCTGATCAGTCATCAGATCCTTGATCAAGCTTGGAATAATTCATAA 1976
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1917 GGACCGCACCTGCGCCTGATCAGTCATCAGATCCTTGATCAAGCTTGCAATAATCCAT-- 1974
Query 1977 AATTTGTAGCTCCATTCTTTTTTCTTCAAATGTTTTGTACACACTAATCGACTTTGGGGG 2036
| || || |||| |||||||| |||||||||||||||| |||||||||||
Sbjct 1975 --T------CT---TT-TTTT--CTTCAAATATTTTGTACACACTAATAGACTTTGGGGG 2020
Query 2037 AAAGAAGAAACAAACACCCGCTAAATTGTTTCAAACCGGAGATTCA 2082
||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2021 AAAGAAGAAACAA-CACCCGATAAATTGTTTCAAACCGGAGATTCA 2065
> Ahg473493 jgi|Araly1|473493|fgenesh2_kg.1__3447__AT1G33170.1
Length=2232
Score = 163 bits (88), Expect = 4e-39
Identities = 330/446 (74%), Gaps = 20/446 (4%)
Strand=Plus/Plus
Query 616 ATTTCCTGGTGGTGGTACGATGTTTCCACGTGGAGCTGATGCTTACATCGACGAGATCGG 675
||| ||||||||||| || ||||||||||||||||||||||||||||| || || || |
Sbjct 791 ATTCCCTGGTGGTGGCACAATGTTTCCACGTGGAGCTGATGCTTACATTGATGATATTGC 850
Query 676 -ACGGTTGATAAATCTCAAAGATGGATCAATTCGGACAGCCATTGATACTGGATGTGGGG 734
| | | || ||| | |||||| | ||| | ||||| ||||||||||||||||| |
Sbjct 851 TA-GACTCATTCCTCTTACTGATGGAGCCATTAGAACAGCTATTGATACTGGATGTGGTG 909
Query 735 TAGCGAGCTTTGGGGCGTATCTAAT-GTCGAGGAACATAGTAACGATGTCGTTTGCACCA 793
| ||||| ||||| || || || | | |||| | || || | ||||| ||||| |||
Sbjct 910 TGGCGAGTTTTGGTGCTTA-CTTGTTGAAGAGGGATATTGTGGCTATGTCATTTGCTCCA 968
Query 794 AGAGACACACACGAAGCTCAGGTTCAGTTCGCACTTGAGA--GAGGAGTCCCTGCCATCA 851
|||||||| || |||||||| ||||| || || ||| || | ||||| ||||| || |
Sbjct 969 AGAGACACTCATGAAGCTCAAGTTCAATTTGCG-TTG-GAACGTGGAGTTCCTGCGATTA 1026
Query 852 TAGG-AGTGTTAGCCTCTATTAGGCTCCCATT-TCCGGCCAGAGCCTTCGA-CATTGCTC 908
| || | | | | || | ||||| || || ||| || ||||| || || | ||||||
Sbjct 1027 TCGGTATTATGGGA-TCAAGAAGGCTTCC-TTATCCAGCTAGAGCTTTTGATC-TTGCTC 1083
Query 909 ATTGCTCTCGATGTCTCATTCCTTGGGGCCA-ATACAACGGGACGTATCTC-ATAGAAGT 966
| || ||||| ||| | ||||||||| || | || | || ||| || | |||||
Sbjct 1084 ACTGTTCTCGTTGTTTGATTCCTTGGTTTCAGA-ACGATGGTTTGTA-CTTGACCGAAGT 1141
Query 967 GGATAGGGTACTGAGACCgggggggTATTGGATT-TTGTCGGGACCGCCGATTAACTGGC 1025
|| |||| | |||||||| || |||||||| || ||||| || ||||| ||||||
Sbjct 1142 AGACCGGGTTTTAAGACCGGGCGGTTATTGGATCCTT-TCGGGTCCACCGATCAACTGGA 1200
Query 1026 AGAGACACTGGAAGGGTTGGGAAAGA 1051
||| | ||||||| || |||||||||
Sbjct 1201 AGAAATACTGGAAAGGCTGGGAAAGA 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79837153520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5