BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00752.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943680 jgi|Araly1|943680|scaffold_604224.1 2174 0.0
Ahg489990 jgi|Araly1|489990|fgenesh2_kg.6__3124__AT4G11740.1 67.6 3e-10
> Ahg943680 jgi|Araly1|943680|scaffold_604224.1
Length=1455
Score = 2174 bits (1177), Expect = 0.0
Identities = 1359/1448 (94%), Gaps = 7/1448 (0%)
Strand=Plus/Plus
Query 86 CGATTTCTCCGGCGGAGATGGTGAGTCCGACGAGAGACGCTATCCAATCTTACATGAGCA 145
|||||||||||||||| ||||| | |||||||||||||||||||||||| || |||||||
Sbjct 6 CGATTTCTCCGGCGGAAATGGTCATTCCGACGAGAGACGCTATCCAATCCTATATGAGCA 65
Query 146 TCACTGGCGCGTCCGAGTCACTCGCGATTCAGAGACTTGAGGAACATGGCAATAATCTCC 205
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 66 TCACTGGCGCGTCCGAGTCACTCGCGATTCAGCGACTTGAGGAACATGGCAATAATCTCC 125
Query 206 CTGAAGCGATCAATGCCCACTTTAGAGATGTCGAAAGAAGCATTTATGATGACTCAAGCT 265
||||||| |||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 126 CTGAAGCCATCAATTCCCACTTTAGAGGCGTGGAAAGAAGCATTTATGATGACTCAAGCT 185
Query 266 TAGACACTCGTTCAGACTACAATGTTGTGGAAGATAACAATCACGTTCGTGGTAGCGAGA 325
|||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 186 TAGACAGTCGTTCAGACTACAATGTTGTGGAAGATAATAATCACGTTCGTGGTAACGAGA 245
Query 326 CTAGGCCAGTTAACGAGTCTAGGCCAGTCCCTGGCGCACTTCCATCTATACTCTCGGCTG 385
|||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 246 CTAGGCCAGTCAACGAGCCTAGGCCAGTCCCAGGCGCACTTCCATCTATCCTCTCGGCTG 305
Query 386 CTCGGGCTTTTAGACCGTCTTTGCTTCTAGATCCCAATTACAGACGGAATATCCTTAGGC 445
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 306 CTCGGGCTTTTAGACCGTCTTTGCTTCTAGATCCCAATTACAGACGAAATATCTTTAGGC 365
Query 446 AGCTCAGTGGCTCTGCTCTCTCTGGAAGTCCTTCTCCATCATCTCACACTGGAGAAGTCA 505
||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 366 AGCTCAGCGGCTCTGCTCTCTCTGGAAGTCCTTCGCCATCACCTCACACAGGAGAAGTCA 425
Query 506 CTGGGTTCCCTGCTCACTCTACCTGGGGAAATGATCACACT---CGTCCTCCTGGACTTG 562
| ||||||||||||||||||| |||||||||||||| ||| | ||||||| ||||||
Sbjct 426 CAGGGTTCCCTGCTCACTCTATGTGGGGAAATGATCAGACTCAACCTCCTCCTCGACTTG 485
Query 563 GAGCGGTTGGAGACGGTTATGCTAGGCATTCACCAAGCTATGGATCCCAGGTCCATGGTG 622
||| |||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct 486 GAGAGGTTGGAGACGGTTATGCCAGGCACTCACCAACCTATGGATCCCAGGTCCATGGTG 545
Query 623 GGACACATAGGGATGCTGACTCACCCGTCCATAGTAACGATGCAGAGGAAGAAATGATCA 682
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 546 GGACACATAGGGATGCTGAATCACCCGTCCATAGCAACGATGCAGAAGAAGAAATGATCA 605
Query 683 GAGCTGCCATTGAGGCCTCGAAGAAGGATTTTCAAGAGGGTCGTCTTAACACAAGATATA 742
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 606 GAGCTGCCATTGAGGCCTCGAAGAAGGATTTTCAAGAGGGTCGTCACAACACTAGATATA 665
Query 743 GTTTGGACAATAATCCATCTAGCGTTTTATCTCCAAGAGAGGTTATTAACCGGGAAGATG 802
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GTTTGGACAATGATCCATCTAGCGTTTTATCTCCAAGAGAGGTTATTAACCGGGAAGATG 725
Query 803 AAGACATTGCCCGTGCAATTTCGATGTCCTTAGAGATGGAAGAGCATGAGAGTGTGTTGC 862
| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 726 AGGACATTGCCCGTGCAATTTCGATGTCCTTAGAGATGGAAGAGCATGAGAATGCGTTGC 785
Query 863 GAGACCAACTAGCTGAATTTATGCCTCAGTCCGTGGAGCATCATGACCCATGTCAGTCTA 922
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 786 GAGAACAACTAGCTGAATTTATGCCTCAGTCCGTGGAGCATCATGACCCATGTCAATCTA 845
Query 923 ATACAAATGAAAGTACTAGATATCAGCCTGGTAGCTCTTCAGTGCAAGACAACCGTGAAG 982
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 846 ATACAAATGAAAGTACCAGATATCAGCCTGGGAGCTCTTCAGTGCAAGACAAGCGTGAAG 905
Query 983 ACATGAACCAAAAGCAGCCAATTAATTCCAGCTCTCAGCACAGACATGATCTCCAGAATA 1042
||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 906 ACATGAAACAAAAGCAGCCAATTAATACCAGCTCTCAGCACAGAAATGATCTCCAGAAT- 964
Query 1043 G-TGAAGGTTCTTATCCTGAAGAGTGGGGTGGCATTCCGTCAAAAGAGCTACAAGAGGCA 1101
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 965 GTTGAAGCTTCTTATCCTGAAGAGTGGGGTGGCATTCCGTCAAAAGAGCTACATGAGGCA 1024
Query 1102 ATAATGCTGGAAAAAGCAATCTTTGGTGGAGTAGCTAACGAAAGTGCTTCACATAATAAT 1161
|||||||||||||| ||| ||||| ||||||||||||| ||||||||||| ||||||| |
Sbjct 1025 ATAATGCTGGAAAAGGCACTCTTTAGTGGAGTAGCTAAAGAAAGTGCTTCGCATAATAGT 1084
Query 1162 CAACTTGGAATTCACAAGGAGTCACAATCT-CCGAATCAGAGGGTTGTTAGAGAGGAACC 1220
|||| |||| ||| |||||||||||||||| ||| || ||||||| ||| || |||| ||
Sbjct 1085 CAACATGGAGTTCTCAAGGAGTCACAATCTCCCG-ATAAGAGGGTCGTTGGACAGGAGCC 1143
Query 1221 TGAGAGAAAGGCAGCGCTTCCCATTGAGCCGTCTGGTGAAAATGAAGATGCCATCACTCT 1280
||||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1144 TGAGAGAAAGGTAGCTTTTCCCATTGAGCCGTCAGTTGAAAATGAAGATGCCATCACTCT 1203
Query 1281 ACTTGTTAGAATGCCAGATAGCAGCCGTCATGGTCGTCGCTTTCTCAAATCAGACAAGCT 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 ACTTGTTAGAATGCCAGATAGCAGCCGTCATGGTCGTCGCTTTCTCAAATCAGACAAGCT 1263
Query 1341 TAAGTACCTTTTTGACTTCATAGATGCTGCTGGATTAGTCAAACCTGGCACATATAGAGT 1400
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TAAGTACCTTTTTCACTTCATAGATGCTGCTGGATTAGTCAAACCTGGCACATATAGAGT 1323
Query 1401 GGTTAGACCATATCCTCGACGTGCTTTCAGCATTCAAGACGGTGCCTTAACCTTTGAGGA 1460
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1324 GGTTAGACCATATCCTCGACGTGCTTTCAGCCTTCAAGACGGTGCCTTAACCTTTGAGGA 1383
Query 1461 ACTCAGCCTCACCAACAAACAAGAAGCGTTGTTTCTGGAACTGCTGGTGTAGCAATATAA 1520
|||||| ||||||||||||||||||||||||||||||||| | |||| |||||| | |||
Sbjct 1384 ACTCAGTCTCACCAACAAACAAGAAGCGTTGTTTCTGGAAATACTGGAGTAGCAGTGTAA 1443
Query 1521 CCTGAGAT 1528
|| |||||
Sbjct 1444 CCAGAGAT 1451
> Ahg489990 jgi|Araly1|489990|fgenesh2_kg.6__3124__AT4G11740.1
Length=1740
Score = 67.6 bits (36), Expect = 3e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 666 AGAGGAAGAAATGATCAGAGCTGCCATTGAGGCCTCGAAGAAGGA 710
||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 592 AGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGATGGA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5