BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00755.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943679 jgi|Araly1|943679|scaffold_604223.1 1567 0.0
> Ahg943679 jgi|Araly1|943679|scaffold_604223.1
Length=1183
Score = 1567 bits (848), Expect = 0.0
Identities = 1066/1167 (91%), Gaps = 31/1167 (3%)
Strand=Plus/Plus
Query 211 TTGAGTTTTATCGAACAAGATGGATTTCGTGAACAATCTTGATACCGACACGTCGCTATC 270
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2 TTGAGTTTTATCGAAGAGGATGGATTTCGTCAACAATCTTGATACCGACACGTCGCTATC 61
Query 271 AATTCTCTCTTGTCTAGATGATCCATCAGATATTGTCCGTGCCAGTGCTGTCTCACGCTC 330
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 62 GATTCTTTCTTGTCTAGATGATCCTTCAGATATTGTCCGTGCTAGTGCTGTCTCACGCTC 121
Query 331 CTGGCGACAA---------TTTG----T---G-G-TTAAGTATAGTCTCTCCAAGAATCT 372
|||||||||| |||| | | | |||||||||||||||||| ||||||
Sbjct 122 CTGGCGACAATTTGCTGCTTTTGCATTTGCAGTGATTAAGTATAGTCTCTCCAGGAATCT 181
Query 373 ATGCTTGAAGTTGTTCCATCAGCTATCTAATGTGGATCATATAATTGAAACAAGTAATGA 432
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 182 ATGCTTGAAGTTGTTCCATCAGCTATCTAATGTGGATCATATAGTAGAAACAAGTAATGA 241
Query 433 TAGAAATGGAGAG-TCATCTGAAGCTGGGTCAAGCAGTCTCATGGATACAAGGCTACTTG 491
||| || || | ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 242 TAGTAACCAAG-GTTCATCTGAAGCCGGGTCAAGCAGTCTCATCGATACAAGGCTACTTG 300
Query 492 AAAAAGAGCACCGGGCTTTTGCCTTGTTGGCTAGAGGGTGCATGTCTTCACCTATTGAAA 551
|||||||||||||||||| |||||| ||||||||||| |||||||| || ||||| |||
Sbjct 301 AAAAAGAGCACCGGGCTTATGCCTTATTGGCTAGAGGATGCATGTCGTCCCCTATCCAAA 360
Query 552 GCTGTATAGCTGATGCCATTAGAGCTTCCAGTACTGATAATTACCCAGTAGAAAGCATCT 611
||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||
Sbjct 361 GCTGTATAGCTGATGCCATTATAGCTTCCAGTACTGATAATTTCCCAGCAGAGAGCATCT 420
Query 612 TAAACACACTCG-AGAAGAGAGATCGGATTGGTCGAACCCCTTCTTATTGGTCGAGTACT 670
|||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 TAAACACACTCGAAGAA-AGAGATCGGATTGGTCGAACCCCTTCATATTGGTCGAGTACA 479
Query 671 GGGCAACACAAAACTACGGTGCCCGA-ATCACTTCTTTACAAGTTGATTGGTGATTTGTG 729
||||| |||| |||| |||||||||| | |||||||||||| ||||| |||||||||||
Sbjct 480 GGGCAGCACAGAACTTCGGTGCCCGAGA-CACTTCTTTACAGGTTGAACGGTGATTTGTG 538
Query 730 TCTCATTACTGAAGTCAGCATCCATCCTTTCCAAGCTTATTTTCAGCGCGGTCATCCGAT 789
| ||||||||||| | ||||| || ||||||||||||||||||||||| |||| ||||||
Sbjct 539 TGTCATTACTGAAATTAGCATTCAGCCTTTCCAAGCTTATTTTCAGCGTGGTCGTCCGAT 598
Query 790 ATACTCTTCACATTATGTTCGTTTCCGGTTGGGTCACGAAAAGGACAATTCACCTC-ACT 848
|||||| |||||||||||||||||||||||||||||| | || ||||||||||| | |||
Sbjct 599 ATACTCGTCACATTATGTTCGTTTCCGGTTGGGTCACCACAACGACAATTCACC-CAACT 657
Query 849 ACAACAATTCACAGGATAAAAAAGGTGAGCCAGGAAAGAGTTCAATTGAAAGCAACTATG 908
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 658 GCAACAATTCACAGGATAAAAAAGGTGAGCCGGGAAAGAGTTCAGTTGAAAGCAACTATG 717
Query 909 TATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAGGAAAATCGATTGCAGAGCTTTC 968
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 718 TATGGACTTACACTTCACAAGAGTTTCCGATGGCTCAGGAAAATCGATTGCAGAGCTTTA 777
Query 969 AGCTTCCAGAACCTGTTCTTTGCATTGGTGGGTATCTGCTAGTCGAGTTTCTAGGTCGAG 1028
|||| |||||||||||||||||||||||||||||| | ||||| |||||||||||| |||
Sbjct 778 AGCTGCCAGAACCTGTTCTTTGCATTGGTGGGTATATCCTAGTTGAGTTTCTAGGTAGAG 837
Query 1029 TTCAGACACAAGAAATGGATGGCCAATACTATATATGCGTGTCACATGTCAAAGTGGAGG 1088
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 838 TTCAGACACAAGAAATGGATGGCCAGTACTATATATGCGTGTCACATGTCAAAGTGGAGG 897
Query 1089 GAAGATCTCTAGCAAAATCATTTCGAGTTGAGAATGTGGATGACAATGGAAAGTTTGGAT 1148
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 898 GAAGATCTCTAGCAAAGTCATTTCGAGTTGAGAATGTGGATGACAATGGAAAATTTGGAT 957
Query 1149 TGAAGGTGTTGAGTTACAATGATCCGaaa-aaaaTGGAGGAGATGGATGCAGAGGCCGGG 1207
||||||| |||||||||| |||||||||| |||| |||||||||||||||||||| |||
Sbjct 958 TGAAGGTTTTGAGTTACAGTGATCCGAAAGAAAA-GGAGGAGATGGATGCAGAGGTGGGG 1016
Query 1208 CAGGACATGGATGCAGAGGCGGGCCAAAGTCAGCTGAGAAACCTTGAACAGCTCTTGAAT 1267
||||| ||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 1017 CAGGAGATGGATGCAGACGCGGGGCAAACTCAGCTGAGAAATCTTGAACAGCTCTTGAAT 1076
Query 1268 TTGTTGCACAGGCATCCTCTCGATGTTGTCGACTATGTTTGGCCTGATGAGTCAGACGAC 1327
||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||
Sbjct 1077 TTGTTGCACAGGCATCCTCTCGAGGTTGTCAACTATGTTTGGCCTGA-G--TCAGACGAC 1133
Query 1328 GAGTATGCTGAATCAGAAGATGAGGCT 1354
|||||||||||||||||||||||||||
Sbjct 1134 GAGTATGCTGAATCAGAAGATGAGGCT 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5