BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00780.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490488 jgi|Araly1|490488|fgenesh2_kg.6__3622__AT4G00780.1 1615 0.0
Ahg895882 jgi|Araly1|895882|Al_scaffold_0006_3878 1011 0.0
> Ahg490488 jgi|Araly1|490488|fgenesh2_kg.6__3622__AT4G00780.1
Length=1181
Score = 1615 bits (874), Expect = 0.0
Identities = 1091/1191 (92%), Gaps = 34/1191 (3%)
Strand=Plus/Plus
Query 1 GTATAAGTCTCCTCCACTTAAGAAGATATCATTTGTAGCTTCTTACAATGTCGCGACCAA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GTATAAGTCTCCTCCACTTAAGAAGATATCATTTGCAGCTTCTTACAATGTCGCGACCAA 60
Query 61 TCCCCATTGAAGAAATGGTGAGGCTGTTCAAAAT-ACGTCACACAACATCTCACTTGTTC 119
|||| ||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||
Sbjct 61 TCCCTATTGAAGAAATGGTGAGACTGTT-TAAATCGCGTTACACAACATCTCACTTGTTC 119
Query 120 AAGATAGACAACTTCTCTTTACTCAAAAAGCATGGAATCGAAAAGGTCGAATCCTCTGTT 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 AAGATAGACAACTTCTCTTTACTCAAAAAGCATGGAGTCGAAAAGGTCGAATCCTCTGTT 179
Query 180 TTCGATCTCGCTGGTCACAAATGGAAACTCTCTGTGTACCCAAATGGGCATAAGAA-TGC 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 180 TTCGATCTCGCTGGTCACAAATGGACACTCTCTGTGTACCCAAATGGGCATAA-AAGTGC 238
Query 239 TAAGGGGACTCATGTCTCCATGTTCTTAGTGAATCAAGTTCCGGTAAATGATATGCCTAC 298
||||||||||||||||||||| |||||| ||||||||||| | ||||||| | ||| |||
Sbjct 239 TAAGGGGACTCATGTCTCCATCTTCTTAATGAATCAAGTTTCAGTAAATGTTTTGCTTAC 298
Query 299 ATATGAGCTCCTAGTCGTCAGTCAACTAGAGCGAAAATGGCACACCCATGGACGAGATGA 358
|||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 299 ATATGAGCTCTTTGTCGTCAGTCAACTAGAGCGAAAATGGCACACCTATGGAAGAGATGA 358
Query 359 GTTTGATATAAATCCAGAACCAGCTAGTGAGGGGTTTTTAAGGTTCATATCTCTTGCTGA 418
|||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 359 GTTTGATACAAATCCAGAACCGGCTACTGAGGGGTTTTTAAGGTTCATATCTTTTGCTGA 418
Query 419 TCTTGAGAGAAAAGGTTTCCTTATTGGAGATTGTTGTATGTTTGGTGTCAAGTTTCATGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 TCTTGAGAGAAAAGGTTTCCTTATTGGAGATTGTTGTATGTTTGGTGTCAAGTTTTATGG 478
Query 479 GATTGAACCTGCTAATCCCGGAACAGCAGAGTGTTTTAGCTTAATAGAGAAGCCTCTTAA 538
||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||
Sbjct 479 GATTGAACCTGCTAATCCCGGGACAGCGGAATGTTTTAGCTTAATTGAGAAGCCTCTTAA 538
Query 539 CCACAAAGTCACTTGGATGATGAGCAAGTTCTCGTCCTTCAACCCTGGAAAGGCTCATCA 598
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCACAAAGTTACCTGGATGATGAGCAAGTTCTCGTCCTTCAACCCTGGAAAGGCTCATCA 598
Query 599 GTCTAATGAATTTGTCGTTGGAACCAGGAAATGGAGACTTGAAGTTCATCCAAGAGGGTA 658
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 599 GTCTAATGAATTTGTCGTTGGAACCAGGAAATGGAGAATTAAAGTTCATCCAAGAGGGTA 658
Query 659 TA-TGGATGAAAAAGACAAATCATTTTCTGTGTATCTATCAGCAGAAGGGTTTGTCAACA 717
|| || | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 659 TAATG-AGGAAAAAGACAAATCATTTTCTGTGTATCTATCCGCAGAAGGGTTTGTCAAGA 717
Query 718 ATGCACCAATGACAAAAACTTACGCCAAGTTCAAGCTGCGGGTATTGGATCAAGTTAGCT 777
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 718 ATGCACCAAACACAAAAACTTACGCGAGGTTCAAGCTGCGGGTATTGGATCAAGTTAGCT 777
Query 778 GGAATCATGTTGAG-GAATCAGGTTTG-AGCTGGTTTGATGCAGAACCTTCGGACCAAAG 835
||||||||| |||| || ||||| | || |||||||||||||||||| | | |||||
Sbjct 778 GGAATCATGCTGAGAGAG-CAGGTACGGAG-TGGTTTGATGCAGAACCT--G-AGCAAAG 832
Query 836 TGGCTTTGCGGATTTCATGCCTCTGGGGAAACTAAATGAACCTTATTTGGTAAAGGATAA 895
|||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||
Sbjct 833 TGGCTTTGCGGATTTCATGCCTTTGGAGAAACTAGATGAACCTTATTTGGTGAAGGATAA 892
Query 896 GCTTTATGTGGGAGTTGAGTTTGAAGTCGTTTCTACCACTTATTACTGTTAGCTTCTAGG 955
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 893 GCTTTATGTGGGAGTTGAGTTTGAAGTCATTTCTACCACTAATTACTGTTAGCTTCTTGG 952
Query 956 CTGTAATAAGTCTTATTGTGAGCTAAAAATAACAAGAAATGTTATAATGTATTGAATAAA 1015
|| |||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 953 CTTTAATAAACCTTATTGTGAGCTAAAAATAGCAACAAATATTATAATGTATTGAATAAA 1012
Query 1016 ATGTTGGAGAATGTACCTACTGA-G-A-------CTTGGAGGT-GGAACTACATTGACCT 1065
||| ||||||||||||||||||| | | ||||||||| ||| |||||| ||||
Sbjct 1013 ATGCTGGAGAATGTACCTACTGATGCAGTAATGACTTGGAGGTTGGA-CTACATCGACCG 1071
Query 1066 AGTCTTAGCCAAAGTCAGATTTCTCTTTTTTGTCGTTCGTATAAATAATACAGTTT---- 1121
||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||
Sbjct 1072 AGTCTTAGCCAAAGTCATATTTCTCTTTTT-GTCGTTTGTATAAATAAAACAGTTTATTT 1130
Query 1122 GCTTCCAAGTTTC-A----CTTTTGTCATCAAAGTCAGACTTGCAATTAGT 1167
|||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 1131 GCTTCCAAGTTTTTAGGAACTTTTGTCATCAAAGTCACACTTGCAATTAGT 1181
> Ahg895882 jgi|Araly1|895882|Al_scaffold_0006_3878
Length=852
Score = 1011 bits (547), Expect = 0.0
Identities = 778/883 (88%), Gaps = 41/883 (5%)
Strand=Plus/Plus
Query 75 ATGGTGAGGCTGTTCAAAAT-ACGTCACACAACATCTCACTTGTTCAAGATAGACAACTT 133
|||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGTGAGACTGTT-TAAATCGCGTCACACAACATCTCACTCGTTCAAGATAGACAACTT 59
Query 134 CTCTTTACTCAAAAAGCATGGAATCGAAAAGGTCGAATCCTCTGTTTTCGATCTCGCTGG 193
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTCTCTACTCAAAAAGTATGGAATCGAAAAGGTCGAATCCTCTGTTTTCGATCTCGCTGG 119
Query 194 TCACAAATGGAAACTCTCTGTGTACCCAAATGGGCATAAGAA-TGCTAAGGGGACTCATG 252
||| ||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 120 TCATAAATGGACACTCTCTGTCTACCCAAATGGGCATAA-AAGTGCTAAGGGGACTCATG 178
Query 253 TCTCCATGTTCTTAGTGAATCAAGTTCCGGTAAATGATATGCCTACATATGAGCTCCTAG 312
||||||| |||||| ||||||||||| | || |||| | ||| ||||||| ||||| | |
Sbjct 179 TCTCCATCTTCTTAATGAATCAAGTTTCAGTTAATGTTTTGCTTACATATAAGCTCTTTG 238
Query 313 TCGTCAGTCAACTAGAGCGAAAATGGCACACCCATGGA-C-GAGATGAGTTTGATATAAA 370
|||||||||||||||||||||||||||||| || || | ||| | ||||||| |||
Sbjct 239 TCGTCAGTCAACTAGAGCGAAAATGGCACA-GCA-AGAGCAAAGACCAATTTGATACAAA 296
Query 371 TCCAGAACC-AGCTAGTGAGGGGTTTTTAAG-GTTCATATCTCTTGCTGATCTTGAGAGA 428
||||||||| || || ||||||| ||||| | ||||||| |||||||||||||| |||||
Sbjct 297 TCCAGAACCGAG-TACTGAGGGG-TTTTATGAGTTCATAACTCTTGCTGATCTTAAGAGA 354
Query 429 AAAGGTTTCCTTATTGGAGATTGTTGTATGTTTGGTGTCAAGTTTCATGGGATTGAACCT 488
|| |||| || | || |||||||||||||| ||| ||||||||||
Sbjct 355 AACGGTTACC--------------T-TA---TTGGTGTCAAGTTTTATGAGATTGAACCT 396
Query 489 GCTAATCCCGGAACAGCAGAGTGTTTTAGCTTAATAGAGAAGCCTCTTAACCACAAAGTC 548
||| ||||||| ||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 397 GCTTATCCCGGGACAGCGGAATGTTTTAGCTTAATTGAGAAGCCTCTTAATCACAAAGTT 456
Query 549 ACTTGGATGATGAGCAAGTTCTCGTCCTTCAACCCTGGAAAGGCT-CATCAGTCTAATGA 607
|| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||
Sbjct 457 ACCTGGATGATGAGCAAGTTCTCGTCCTTTAACCCTGGAAAGG-TCCATCAGTCTAATGA 515
Query 608 ATTTGTCGTTGGAACCAGGAAATGGAGACTTGAAGTTCATCCAAGAGGGTATA-TGGATG 666
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || | |
Sbjct 516 ATTTGTCGTTGGAACCAGGAAATGGAGAATTGAAGTTCATCCAAGAGGGTATAATG-AGG 574
Query 667 AAAAAGACAAATCATTTTCTGTGTATCTATCAGCAGAAGGGTTTGTCAACAATGCACCAA 726
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 575 AAAAAGACAAATCATTTTCTGTGTATCTATCCGCAGAAGGGTTTGTCAAGAATGCACCAA 634
Query 727 TGACAAAAACTTACGCCAAGTTCAAGCTGCGGGTATTGGATCAAGTTAGCTGGAATCATG 786
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 635 ACACAAAAACTTACGCGAGGTTCAAGCTGCGGGTATTGGATCAAGTTAGCTGGAATCATG 694
Query 787 TTGAG-GAATCAGGTTTG-AGCTGGTTTGATGCAGAACCTTCGGACCAAAGTGGCTTTGC 844
|||| || ||||| | || |||||||||||||||||| | | ||||||||||| ||
Sbjct 695 CTGAGAGAG-CAGGTACGGAG-TGGTTTGATGCAGAACCT--G-AGCAAAGTGGCTTCGC 749
Query 845 GGATTTCATGCCTCTGGGGAAACTAAATGAACCTTATTTGGTAAAGGATAAGCTTTATGT 904
||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 750 GGATTTCATGCCTTTGGGGAAACTAGATGAACCTTATTTGGTGAAGGATAAGCTTTATGT 809
Query 905 GGGAGTTGAGTTTGAAGTCGTTTCTACCACTTATTACTGTTAG 947
|||||||||||||||||| ||||||||||| |||||||||||
Sbjct 810 GGGAGTTGAGTTTGAAGTTATTTCTACCACTAATTACTGTTAG 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5