BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00990.1 Length=2804 Score E Sequences producing significant alignments: (Bits) Value Ahg490470 jgi|Araly1|490470|fgenesh2_kg.6__3604__AT4G00990.1 3716 0.0 > Ahg490470 jgi|Araly1|490470|fgenesh2_kg.6__3604__AT4G00990.1 Length=2557 Score = 3716 bits (2012), Expect = 0.0 Identities = 2390/2570 (93%), Gaps = 36/2570 (1%) Strand=Plus/Plus Query 79 TTTGTCTCCGAGTATGGAGAAAATGAGAGGGAAGCGAATCAGACCAAGAGATTCCGGCGA 138 ||||||||||||||||||||||| || ||||||||||||||||| | ||||||||| ||| Sbjct 1 TTTGTCTCCGAGTATGGAGAAAAGGAAAGGGAAGCGAATCAGACGAGGAGATTCCGACGA 60 Query 139 GTTAGTCGAAGATGGGAGATCTGAAAGCGAGCGTAAGACgaggaagaaagagaatgatgt 198 |||| ||||||||||| ||||| ||| || ||||||| |||||||||||||||||||| | Sbjct 61 GTTATTCGAAGATGGGGGATCTCAAAACGGGCGTAAGGCGAGGAAGAAAGAGAATGATCT 120 Query 199 tgtgagcaaaggaagaatcggaagagg-a-a-g-ag--g--aa---ga----ggagaggT 243 |||||||| |||| ||||||||||||| | | | || | || || |||||||| Sbjct 121 TGTGAGCAGAGGACGAATCGGAAGAGGAAGAGGAAGAAGAAAATTTGATGGCGGAGAGGT 180 Query 244 TTCGAAGCGATCTATTGAAATAGACATTTCTAATCCCGAGAAGGATATTAAGCCTGACGG 303 ||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||| || Sbjct 181 TTCTAAGCGATCTATTGAAATCGACATGTCTAATCCCGAGAAGGATATTAAGTCTGATGG 240 Query 304 AAGCAGAAAGTGTTTGGGTTCGACGTGTCATCATTGTAAGATCTTGACGAGTGAGAGTGA 363 ||||||||||| | |||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 241 AAGCAGAAAGTATGTGGGTTTGACGTGTCATCATTGTAAGAACTTGACGAGTGAGAGTGA 300 Query 364 TCTTATCTTCTGTTCAAAGTGTAACAAGAAGTGTTATTGCTTTGACTGCATCAAGAGATC 423 |||||||||||||||||| ||||||||||| | |||||| ||| || |||||||||| Sbjct 301 TCTTATCTTCTGTTCAAAATGTAACAAGAA--G-TATTGCAATGAGTGTATCAAGAGATG 357 Query 424 GTATTCAGAAAGAACACAT-GAGGAAGTTAGAGCTGCTTGTCCATTCTGTATGATGACTT 482 |||||||||||||||| || ||||||||| |||||||||||||||||||||||| || || Sbjct 358 GTATTCAGAAAGAACA-ATAGAGGAAGTTCGAGCTGCTTGTCCATTCTGTATGAAGAATT 416 Query 483 GCATTTGCAGAGCTTGTTTGCGGTTGCCTTTGGTTATCAAGCCTCCAAGTGAAAAAGATA 542 ||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||||| | Sbjct 417 GCAATTGCAGAGGTTGTTTGCGGTTGCCTTTGGTTGTCAAGCCTCGAAGTGAAAAAGAAA 476 Query 543 CAGATGTCAAGCTTAAGCAGCTGCAGTATCTGTTAGTCAAAGTTCTCCCAGTTCTTAAGG 602 || |||||||| |||||||| ||||||| || ||||| |||||||||||||||||||||| Sbjct 477 CAAATGTCAAGTTTAAGCAGTTGCAGTACCTATTAGTTAAAGTTCTCCCAGTTCTTAAGG 536 Query 603 ATATTTATACGGAGCAGAACCGTGAACTAGAGATTGAATCAACAATTAGAGGACACCCTG 662 ||||||||| |||||||||||||||||| ||||||||| |||| |||||||||| ||||| Sbjct 537 ATATTTATATGGAGCAGAACCGTGAACTTGAGATTGAAGCAACTATTAGAGGACTCCCTG 596 Query 663 TGACAGAAGCTAATATCAAGAGGTGCAAACTTGACCCAAGCGAACGCATATACTGTGATC 722 |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 597 TGACAGAAGCTAATATTAATAGGTGCAAACTTGACCCAAGTGAACGCATATACTGTGATC 656 Query 723 TCTGCCGCACATCCATTGCCAATTTTCACAGAAGCTGTCCGAACAAAAATTGTTCAGTCG 782 ||||||| |||||||||||||||||| ||||||||||||||||| | |||||||||||| Sbjct 657 TCTGCCGAACATCCATTGCCAATTTTTACAGAAGCTGTCCGAACCCAGATTGTTCAGTCG 716 Query 783 ATATATGTCTTTCTTGCTGCAAGGAACTAAGTGAGGGCTTCCATCAAGAGAGAGATGGGA 842 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 717 ATATATGTCTTTCTTGTTGCAAGGAACTAAGTGAGGGATTCCATCAAGAGAGAGATGGGA 776 Query 843 AGAAAAATGCAGAAGGGAAAGGATATGAATGTCGAATCCCAGCAGGTCAAGGAAAAGACT 902 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | Sbjct 777 AGAAAAATGCAGAAGGGAAAGGATATGAATGGCGAATCCAAGCAGGTCAAGGAAAAGATT 836 Query 903 CGGACGCATATGTTCCACTGCATTTCTCGACTTGGAAGCTTAACTCAGACAGTAGCATTC 962 |||| || |||||||||||||||||||| ||||||||| |||| |||||||||||||||| Sbjct 837 CGGAAGCCTATGTTCCACTGCATTTCTCTACTTGGAAGATTAAATCAGACAGTAGCATTC 896 Query 963 CATGCCCTCCAAAAGAGTGTGGTGGTTGTGGTACTTCAACACTGGAGTTGAGACGCTTAT 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 CATGCCCTCCAAAAGAGTGTGGTGGTTGTGGTACTTCAACACTGGAGTTGAGACGCTTAT 956 Query 1023 GGAAAAGAGATTGGGTTGAAAAATTAATAACGAATGCCGAGAAATGTACTCTGAATTTTA 1082 |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 957 GGAAAAAAGATTGGGTTGAAAAATTAATAACGAATGCCGAGGAATGTACTCTGCATTTTA 1016 Query 1083 GGCCAACAGATGTGGATATTGTTCATGAATGTTCCTCATGCTCTACCAATTCTGATTCCA 1142 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 1017 GGCCATCAGATGTGGATATTGCTCATGAATGTTCCTCATGCACTACCAATTCTGATTCCA 1076 Query 1143 TTAGAAGGCAGGCAGCTTTTAGGAAGAATGCTCATGATAATTTCTTATACTCCCCAAATG 1202 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1077 TTAGAAGGCAGGCAGCATTTAGGAAGAATGCTCATGATAATTTCTTGTACTCCCCAAATG 1136 Query 1203 CTGTTGATCTGGCTGAAGACGATATTGCTCATTTTCAGTTTCATTGGATGAAGGCAGAAC 1262 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 1137 CTGTTGATCTGGCTGAAGACGATATTGCTCATTTTCAGTCGCATTGGATGAGGGCAGAAC 1196 Query 1263 CTGTGATAGTCAGAAATGTTCTCGAGAAGACATCTGGACTAAGTTGGGAACCAATGGTTA 1322 |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1197 CTGTTATAGTTAGAAATGTTCTCGAGAAGACGTCTGGACTAAGTTGGGAACCAATGGTTA 1256 Query 1323 TGTGGAGGGCTTGTAGGGAAATGGATCCAAAGCGTAAAGGTACAGAAGAAGAGAC-AACA 1381 ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| || | Sbjct 1257 TGTGGAGGGCTTGTAGGGAAATGGATCCAAAGCTTAAATGTAAAGAAGAAGAGACGAA-A 1315 Query 1382 AAAGTGAAAGCTTTGGATTGCTTGGACTGGTGTGAGGTTGAAATAAATCTGCATCAGTTT 1441 ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1316 AAAGTCAAAGCTTTGGATTGCTTGGACTGGTGTGAGGTTGAAATAAATATTCATCAGTTT 1375 Query 1442 TTTGAGGGCTACTTAGAAGGCCGCATGCATAAAAACGGTTGGCCAGAAATGTTGAAATTG 1501 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 TTTGACGGCTACTTAGAAGGCCGCATGCATAAAAACGGTTGGCCAGAAATGTTGAAATTG 1435 Query 1502 AAGGACTGGCCTCCCTCAGA-TTTATTTGAAAAGCGCCTTCCAAGGCATAATGCTGAGTT 1560 ||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1436 AAGGATTGGCCTCCATCA-ACTTTATTTGAAAAGCGCCTTCCAAGGCATAATGCTGAGTT 1494 Query 1561 TATTGCCGCATTGCCTTTCTTTGATTACACTGACCCAAAGTCTGGTATCCTAAATCTCGC 1620 |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1495 TATTGCTGCACTGCCTTTCTTTGATTACACTGATCCAAAGTCTGGTATCCTAAATCTCGC 1554 Query 1621 AACAAGATTTCCGGAAGGATCCTTGAAGCCAGATCTTGGACCCAAGACATACATTGCGTA 1680 ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 AACAAGACTTCCAGAAAAATCCTTGAAGCCAGATCTTGGACCCAAGACATACATTGCGTA 1614 Query 1681 CGGTTTCCATGAAGAGCTTAATAGAGGAGATTCGGTGACAAAACTTCATTGTGACATTTC 1740 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1615 CGGTTTCCATGAAGAGCTTAATAGAGGAGATTCGGTGACAAAACTACATTGTGATATTTC 1674 Query 1741 TGACGCGGTCAATGTGTTGACACACACAGCTAAAGTGGAAATCCCTCCCGTCAAATACCA 1800 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1675 TGACGCGGTCAATGTGTTGACACACACAGCTAAAGTGGAAATCCCTCCCGCCAAATACCA 1734 Query 1801 AAACATAAAAGTACATCAGAAAAAATA-TGCAGAAGCCATGTTGCAGAAACAACAATACA 1859 |||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| Sbjct 1735 AAACATAAAAGTACATCAGAAAAA-TAATGCAGAAGCCATGTTGCAGAAACAGCAATACA 1793 Query 1860 GTGGTCAAGTGAAAGAAGCCAGCGAACTTGAAAACAAGTCAATGAAAGAAGTGGATGAA- 1918 |||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 1794 GTGGTCAAGTGACAGAAGCCAGCGAACTTGAAAATAAGTCACTGAAAGAAGTGGATGATG 1853 Query 1919 AGTAAAAAGGATTTAAAAGACAAGGCAGCTAACGAAGAACAATCAAATAACAGTTCAAGA 1978 | |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1854 A-TAAACAGGATTTAAAGGACAAGGCAGCTAACGAAGAACAGTCAAATAACAGTTCAAGA 1912 Query 1979 CCGTCGGGCTCAGGAGAAGCTGAGAAAGTAATTATTTCAAAAGAGGATAATCCCACACAA 2038 ||| || |||| ||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1913 CCG--GG-CTCACAAGAAGTTGAGAAAGTAAATATTTCAAAAGAGGATAATCCCACACAA 1969 Query 2039 CCTGCTGTGAGTACAAGTGTGGAATCCATACAAGAACAGAAGCTGGATGCTCCAAAAGAA 2098 ||||||||||||| || |||||||||||||||||| ||||||||||||| || ||||||| Sbjct 1970 CCTGCTGTGAGTATAATTGTGGAATCCATACAAGAGCAGAAGCTGGATGTTC-AAAAGAA 2028 Query 2099 A-CTGATGGCAATACCAATGAGAGGTCAAAGGCTGTGCATGGTGGTGCTGTCTGGGATAT 2157 | | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2029 AACAGATGGCAATACCAATGAGAGGTCAAAGGCTGTGCACGGTGGTGCTGTCTGGGATAT 2088 Query 2158 CTTTCGAAGAGAGGATGTTCCAAAACTTATTCAGTTTTTGAAAAGGCACGAGCATGAGTT 2217 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2089 CTTTCGAAGAGAGGATGTTCCAAAACTTATTCAGTTTTTGAAAAGGCACAAGCATGAGTT 2148 Query 2218 TCGTCACTTCAATAACGAACCCCTGGAATCCGTTATTCACCCAATTCATGACCAGACTAT 2277 ||||||| |||||||||||||| || |||| ||| ||||||||||||||||||||||||| Sbjct 2149 TCGTCACATCAATAACGAACCCGTGAAATCTGTTGTTCACCCAATTCATGACCAGACTAT 2208 Query 2278 GTTCTTGAGTGATAGCCAGAAGAAACAGCTGAAAGAAGAATTTGATATAGAACCATGGAC 2337 ||||||| |||| || |||||| |||||||||| || ||||||||||||||||||||||| Sbjct 2209 GTTCTTGTGTGAAAGTCAGAAGCAACAGCTGAAGGAGGAATTTGATATAGAACCATGGAC 2268 Query 2338 CTTTGAGCAACACCTCGGCGAAGCAGTCTTCATACCTGCAGGTTGTCCTCACCAAGTGAG 2397 |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 2269 CTTTGAGCAACACCTCGGCGAAGCTGTTTTCATACCTGCAGGGTGTCCTCACCAAGTGAG 2328 Query 2398 GAATAGACAGTCTTGCATAAAGGTGGCACTAGACTTTGTGGCTCCTGAAAGCGTCGAAGA 2457 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2329 GAATAGACAGTCTTGCATAAAGGTGGCACTAGACTTTGTGGCTCCTGAAAGCGTTGAAGA 2388 Query 2458 ATGCCTTAGGCTAACACAGGAGTTCCGGAGATTGCCTAAAGACCACAGTTCTAGCGAGGA 2517 ||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| || Sbjct 2389 ATGCCTTAGGCTAACACAGGAGTTCCGTAGATTACCGAAAGACCACAGATCTAGCGAAGA 2448 Query 2518 TAAATTGGAGCTTAAGAAAATTGCACTGTATGCTGCGAGTTCAGCCATAAGAGAGGTAAA 2577 ||||||||||||||||||||| || || ||||||||||| |||||||||||||||||||| Sbjct 2449 TAAATTGGAGCTTAAGAAAATAGCGCTTTATGCTGCGAGCTCAGCCATAAGAGAGGTAAA 2508 Query 2578 AGG-GCTAATGCAAAGCTCC-CGACGCAGTGATACCTAACAAATGACAAG 2625 || ||||||||||| |||| |||||||||||| |||||||||||||||| Sbjct 2509 -GGAGCTAATGCAAAACTCCACGACGCAGTGATGCCTAACAAATGACAAG 2557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105814700610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5