BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01000.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490469 jgi|Araly1|490469|fgenesh2_kg.6__3603__AT4G01000.1 1845 0.0
Ahg925061 jgi|Araly1|925061|scaffold_200622.1 331 9e-90
> Ahg490469 jgi|Araly1|490469|fgenesh2_kg.6__3603__AT4G01000.1
Length=1361
Score = 1845 bits (999), Expect = 0.0
Identities = 1272/1396 (91%), Gaps = 49/1396 (4%)
Strand=Plus/Plus
Query 1 CAAGCAGCgagagagagagagaCTTATTATTAGGGCTCCGTCAAATTTCCCCAATTT-CT 59
||||||| |||||||||||| || |||||||||||||||||| |||||||||||| ||
Sbjct 1 CAAGCAGTGAGAGAGAGAGACAC---TTATTAGGGCTCCGTCAATTTTCCCCAATTTCCT 57
Query 60 CTCTGATTCCTCTCTAGAAATC--GAACTTCTTCTTCTTCGTCCAAGC-T--TTT-GAAT 113
|||||||||||||| ||||||| ||||||||||||||||||||| | ||| ||||
Sbjct 58 CTCTGATTCCTCTCCAGAAATCTTCTTCTTCTTCTTCTTCGTCCAAGCTTCCTTTAGAAT 117
Query 114 CGAAAATCGATGGCGGATCAGAGTTCTAAGCCGTTGCAGTTTTTCGTGAGACTACTCGAC 173
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 118 CG-AAATCGATGGCGGATCAGAGCTCTAAGCCGTTGCAGTTTTTCGTTAGACTACTCGAC 176
Query 174 GGAAAATCATTAACCCTAAGTTTCTCCTCTCCGTTAGCTTATGGCGAGCAGATCAAGCAG 233
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 GGTAAATCATTAACCCTAAGTTTCTCCTCTCCATTAGCTTATGGCGAGCAGATCAAGCAG 236
Query 234 CGGATCTTCGAGCAAACGAAGATCCCGACGCATCTACAGAGATTGATAAGCGGAGGATAC 293
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 237 CGGATCTTCGAGCAAACGAAGATTCCGACGCATCTACAGCGATTGATAAGCGGAGGATAT 296
Query 294 CAAATCTCCGATGGATCCGCGATTTCTCAGCCTGACGCCACCGTGAATCTTGTCCTTTCA 353
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAAATCTCCGACGGATCCGCGATTTCTCAGCCTGACGCCACCGTGAATCTTGTCCTTTCC 356
Query 354 CTCCGTGGAGGTAAAGGAGGATTCGGATCGTTACTTCGTGGTGGGGGTATGAAAGCTGGG 413
|| |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 357 CTGCGTGGAGGTAAAGGTGGATTCGGATCGTTACTTCGTGGTGCGGGTACGAAAGCTGGG 416
Query 414 CAGAAGAAGACGAACAACTTCGATGCTTGTAGGGATATGAGTGGACGGAGATTGAGGCAT 473
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 417 CAGAAGAAGACAAACAACTTCGATGCGTGTAGGGATATGAGTGGACGGAGATTGAGGCAT 476
Query 474 GTAAACGCAGAGAATAGGCTTCAGGAGTGGAAGGATGGTGAAGAAGGGAGGAACCTTGAG 533
|||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 477 GTAAACGCCGAGAATAGGCTTCAGGAGTGGAAGGAAGGTGAAGAAGAGAGGAAGCTTGAG 536
Query 534 AAAAAGGCTCTTGAGTATCTGAAGAAGCAATCCAATAAAGTGAAACAAGGTGTTGGAAAT 593
||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 537 AAATCGGCTCTTGAGTTTCTCAAGAAGCAAGCCAATAAAGTGAAACAAGGTGTTGGGAAT 596
Query 594 GGAGCTACGCAGAAGTATGTTAATAAGTATAAGGAAGAATCTGATAAGTGTATTTTGGCT 653
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 GGAGCTACGCAGAAGTATGTTAACAAGTATAAGGAAGAATCTGATAAGTGTATTTTGGCT 656
Query 654 GTTGATTTGGCTTTGAATGAATCTTTCAAGAATGGGAAGAGAAAAGCGAAGATTGGTGCT 713
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 657 GTTGATTTGGCTTTGAACGAATCTTTCAAGAATGGGAAGAGAAAAGGGAAGATTGGTGCT 716
Query 714 GAATCTGAGAAGAAGAAGCGTCTCAAAATATGGAAGGGGAAGAGAGCTGTTGAAGATAGT 773
|| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 717 GACTCTGAAAAGAAGAAGCGACTCAAGATATGGAAGGGGAAGAGAGCTGTTGAAGATAGT 776
Query 774 GACAGTGATGATAGC-GACGACGAGGAAGATGAGAAATCTGTTGTTCTAAACAATGGTGG 832
||||||||||||||| | |||||| ||||||||||||||||||||| | |||||||||||
Sbjct 777 GACAGTGATGATAGCAG-CGACGAAGAAGATGAGAAATCTGTTGTTATGAACAATGGTGG 835
Query 833 TCATGATGGTGATTCATCTGGTAAATCT-TCATGCAATAGTGGTTCAGAGGAAGAGAACG 891
|||||||||||||| |||||||||||| | ||||||||| ||||| |||||||||||||
Sbjct 836 ACATGATGGTGATTCTTCTGGTAAATCTCT-ATGCAATAGCGGTTCGGAGGAAGAGAACG 894
Query 892 ACGCTGTAATGCACCGC--A-GTTTCGATGTGGTTAAGGAAGAGATCACCGGTGTTCAAG 948
||| | || |||||| | | | || |||||||||| |||||||||||||||
Sbjct 895 ACGGTCTAGTGCACCACCGAAGATTAGATGTGGTTA---------TCACCGGTGTTCAAG 945
Query 949 GGATTATTGAAGAGGAGATGAATGATTTACCTGTTTCTGTTGCTGTTGATGATGCTAATA 1008
|||||| |||||| ||||| |||||||||||||| |||||||||||| |||||| |||
Sbjct 946 GGATTAACGAAGAGAAGATGGATGATTTACCTGTTGCTGTTGCTGTTGCTGATGC-AAT- 1003
Query 1009 CTGTTGCTGATGAAATGGATCAACTTGAAAAGGTGGAGAAATCAAGTGGAGACGCAGGGA 1068
| | || | | | || |||| ||||||||||||||||||||||||||||
Sbjct 1004 --G--G---ATCA--T----C--CT-GAAATTGTGGAGAAATCAAGTGGAGACGCAGGGA 1047
Query 1069 AGAATCTGGTTGATGTAGCTTGTGAAACGTTAATTACGTCTGCAGCTGTTAAGAGAGAAG 1128
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1048 AGAATCTGGTCGATGTAGCTTGTGAAACGTTAATTACGTCTGCAGCTGTTAAGAGAGGAG 1107
Query 1129 GAACTGCGAAAGAAACAGTGTCTGTTGATGCAGTATGTTGCAAACCTGTTGAACCACTTA 1188
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 1108 GAACTGCGAAAGAAACAGTGTCTGTTGATGCAGTTTGTTGCAAACCTGTTGGACCGCTTA 1167
Query 1189 ACTTTGATGACTTCAATTCACC-AGCAGACATGGAGGTTTTGGGGATGGAGAGATTGAAG 1247
||||||| |||||||||||| | | |||| ||||||||||||||||||||||||||||||
Sbjct 1168 ACTTTGACGACTTCAATTCAGCTA-CAGATATGGAGGTTTTGGGGATGGAGAGATTGAAG 1226
Query 1248 ACTGAGCTTCAGTCACGTGGTCTGAAGTGCGGAGGGACATTGCGAGAGCGAGCTGCGAGG 1307
|||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 1227 ACTGAGCTTCAGTCACGTGGTCTGAAATGCGGAGGGACATTGCAAGAGCGGGCTGCGAGA 1286
Query 1308 CTATTTTTACTTAAATCAACGCCACTCGATAAGCTCCCAAAGAAATTACTGGCCAAGAAA 1367
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1287 CTATTTTTACTTAAATCAACACCACTCGATAAGCTCCCAAAGAAATTGCTGGCCAAGAAA 1346
Query 1368 TGACAGA-CAACATCC 1382
||| ||| ||||||||
Sbjct 1347 TGA-AGAACAACATCC 1361
> Ahg925061 jgi|Araly1|925061|scaffold_200622.1
Length=424
Score = 331 bits (179), Expect = 9e-90
Identities = 246/277 (89%), Gaps = 10/277 (4%)
Strand=Plus/Plus
Query 1119 AAGAGA-GAAGGAACTGCGAAAGAAACAGTGTCTGTTGATGCAGTATGTTGCAAACCTGT 1177
|||| | ||| ||||| |||||||||| || | |||||||||||| |||||||||||||
Sbjct 153 AAGAAAGGAA-GAACTACGAAAGAAACGGTCTTTGTTGATGCAGTGTGTTGCAAACCTGC 211
Query 1178 TGAACCACTTAACTTTGATGACTTCAATTCACCAGCAGACATGGAGGTTTTGGGGATGGA 1237
||||| |||||||||||| ||||||||||| || |||| ||||||||||||||||||||
Sbjct 212 TGAACTGCTTAACTTTGATAACTTCAATTCAGCAACAGATATGGAGGTTTTGGGGATGGA 271
Query 1238 GAGATTGAAGACTGAGCTTCAGTCACGTG-GTCTGAAGTGC-GGAGGGACATTGCGAGAG 1295
|||||||||||| ||||||||||||| | ||||||| ||| || |||||||||||||||
Sbjct 272 GAGATTGAAGACAGAGCTTCAGTCAC-TCAGTCTGAAATGCCGG-GGGACATTGCGAGAG 329
Query 1296 CGAGCTGCGAGGCTATTTTTACTTAAATCAACGCCACTCGATAAGCTCCCAAAGAAATT- 1354
| ||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 330 CTAGCTGTGAGGCTAATTTTACTTAAATCAACACCACTTGATAAGCTCCCAAAGAAATTG 389
Query 1355 ACTGGCCAAGAAATGACAGA-CAACATCCAACTCCAA 1390
| |||||||||||||| ||| ||||||||||||||||
Sbjct 390 A-TGGCCAAGAAATGA-AGAACAACATCCAACTCCAA 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5