BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01040.1 Length=1448 Score E Sequences producing significant alignments: (Bits) Value Ahg352729 jgi|Araly1|352729|fgenesh1_pg.C_scaffold_6003322 1794 0.0 > Ahg352729 jgi|Araly1|352729|fgenesh1_pg.C_scaffold_6003322 Length=2610 Score = 1794 bits (971), Expect = 0.0 Identities = 1178/1273 (93%), Gaps = 33/1273 (3%) Strand=Plus/Plus Query 15 ATGGCGAGGAGGCGACGTTCATCGGCGGCGGAGAGTTTGAAACGGCGGAACGACGGATAC 74 ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| || Sbjct 1 ATGGCGAGGAGACGACATTCATCGGCGGCGGAGAGTTTGAAACGGCGGAAGGACGGAGAC 60 Query 75 GAGTCACTGTGTCAAGTCGTACAACAAGATTCAGATCGGAGACTCATCACCATTTTCGTA 134 |||||||||| |||||||| ||| || ||||||||||||||||||||||||||||| Sbjct 61 GAGTCACTGTCTCAAGTCGGGGAACCGGACTCAGATCGGAGACTCATCACCATTTTCGTG 120 Query 135 ATCTTCTTCAT-TGTGATTCCCGCCGTTTCGATTGCT-GTGTACAAAGTCAAATTCGCTG 192 ||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 121 ATCTTCTTCATCT-TGATTCCCGCCGTTTCGATTG-TCGTGTACAAAGTCAAATTCGCTG 178 Query 193 ATCGAGTCATCCAAACGGAATCATCAATACGTCAAAAGGGAATCGTTAAAACTGATATTA 252 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 179 ATCGAGTCATCCAAACGGAACCATCAATACGTCACAAGGGAATCGTTAAAACTGATATTA 238 Query 253 ATTTCCAAGAAATCCTCACTGAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATG 312 |||||||||||||||||||||||||||| ||||| ||||||| ||||| | |||| | Sbjct 239 ATTTCCAAGAAATCCTCACTGAACATTCTAAGGCCGCAGAGAA-TCAAC-A---ACTA-G 292 Query 313 ATTATCCAGTGTTAGCTTACATTACTCCATGGAACTCTAAAGGCTATGATATGGCAAAGA 372 || || | |||| |||| |||||||||||| |||||||||||||||| Sbjct 293 -----GCA---CTA---T-GATTA-TCCA--GAACTCTAAAGGTTATGATATGGCAAAGA 337 Query 373 TATTCAACTCAAAGTTTACACATTTATCGCCGGTATGGTACGACCTG-A-AG-A---GCC 426 |||| ||||||||||||||||||||||| |||||||||||||| ||| | || | ||| Sbjct 338 TATTTAACTCAAAGTTTACACATTTATCACCGGTATGGTACGATCTGAAGAGTAGTGGCC 397 Query 427 AAGGGTCTGGATTGGTTTTGGAAGGGAGACATAATGCTGATAAGGGATGGATTCAAGAGC 486 |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 398 AAGGATCTGGGTTGGTTTTGGAAGGGAGACATAATGCTGATAAGGGATGGATCCAAGAGC 457 Query 487 TTCGGTCAAGAGGCAA-TGCACTGATATTACCAAGAGTTGTTCTAGAAGCAATTCCTGGG 545 ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 458 TTCGGTCAAGAGG-AAGTGCGCTGATATTACCAAGAGTTGTTCTAGAAGCAATTCCTGGG 516 Query 546 GAGATGCTTAACaaaaaaaaaCTAAGAGAGAAAGCTATCAGTCTTATTGTCACAGAGTGC 605 ||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| Sbjct 517 GAGATGCTTAAGAAAAAGAAACTAAGGGAGAAAGCTATCAATCTTATTGTCACAGAGTGC 576 Query 606 AAGGAAATGGAATACAATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGC 665 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 577 AAGGAAATGGAATATGATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGC 636 Query 666 GTTTTGCATGACCCTGATTTGCGGAAAATGGCACTGAAATTCGTAAAACAACTTGGAGAC 725 |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 637 GTTTTGCATGACCCAGATATGCGGAAAATGGCACTGCAATTCGTAAAACAACTTGGAGAC 696 Query 726 GCTCTTCACTCAACGAGCTCACCAAGAAACAACCAGCAACATATGCAGTTCATGTATGTC 785 || ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 697 GCCCTTCACTCAACAAGCTCACTGAGAAATAACCAGCAACATATGCAGTTCATGTATGTC 756 Query 786 GTTGGTCCGCCTCGTTCAGAGAAGCTCCAAATGTACGATTTTGGGCCAGAAGATCTTCAA 845 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 757 GTTGGTCCACCTCGTTCAGAGAAGCTCCAAATGTACGATTTTGGGCCCGAAGATCTTCAA 816 Query 846 TTCTTGAAAGATTCGGTTGATGGGTTCTCTCTTATGACCTATGATTTCTCAAATCCCCAG 905 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 817 TTCTTGAAAGATTCGGTTGATGGGTTCTCTCTTATGACCTATGATTTCTCCAATCCCCAG 876 Query 906 AACCCTGGCCCCAATGCTCCTGTCAAGTGGATAGATTTAACTCTCAAGCTCCTGCTTGGG 965 ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| Sbjct 877 AACCCTGGCCCCAATGCACCTGTCAAGTGGATAGATTTGACCCTCAAGCTCCTGCTTGGT 936 Query 966 TCATCCAACAACATAGACTCAAACATAGCCAGGAAGGTTCTTCTTGGTATCAACTTTTAC 1025 |||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 937 TCATCCAATACCATAGACTCAAACATAGCCAGAAAAGTTCTTCTTGGTATCAACTTTTAC 996 Query 1026 GGCAACGATTTTGTAATCTCTGGAGATTCAGGAGGTGGAGGAGCAATCACCGGAAGGGAT 1085 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 997 GGAAACGATTTTGTAATCTCTGGAGATTCAGGAGGCGGAGGAGCAATCACCGGAAGGGAT 1056 Query 1086 TACCTCGCATTACTCCAGAAACACAAGCCAACTTTCCGTTGGGATAAAGAGAGCGGCGAA 1145 |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || Sbjct 1057 TACCTCGCATTACTCCAGAAACACAAACCAAATTTTCGTTGGGATAAAGAGAGCGGGGAG 1116 Query 1146 CATCTTTTCATGTATAGAGATGATAAGAACATCAAGCATGCTGTTTTCTATCCTACATTG 1205 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1117 CATCTTTTCATGTATAGAGATGACAAGAACATCAAGCATGCTGTTTTCTATCCTACATTG 1176 Query 1206 ATGTCAATCCTTCTACGGCTTGAGAATGCTCGTCTCTGGGGAATCGGCATTTCAATCTGG 1265 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1177 ATGTCAATCCTTCTACGGCTTGAGAATGCTCGTCTCTGGGGTATCGGCATTTCAATCTGG 1236 Query 1266 GAAATCGGACAAG 1278 ||||||||||||| Sbjct 1237 GAAATCGGACAAG 1249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54164328390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5