BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01060.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value Ahg327672 jgi|Araly1|327672|fgenesh1_pm.C_scaffold_6002892 411 2e-114 > Ahg327672 jgi|Araly1|327672|fgenesh1_pm.C_scaffold_6002892 Length=240 Score = 411 bits (222), Expect = 2e-114 Identities = 235/241 (98%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 4 ATGGATAACCATCGCAGGACTAAGCAACCCAAGACCAACTCCATCGTTACTTCTTCTTCT 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATAACCATCGCAGGACTAAGCAACCCAAGACCAACTCCATCGTTACTTCTTCTTCT 60 Query 64 GAAGGAACAGAAGTGAGTAGTCTTGAGTGGGAAGTTGTGAACATGAGTCAAGAAGAAGAA 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAAGGAACAGAAGTGAGTAGTCTTGAGTGGGAAGTTGTGAACATGAGTCAAGAAGAAGAA 120 Query 124 GATTTGGTCTCTCGAATGCATAAGCTTGTCGGTGACAGGTGGGAACTGATAGCTGGGAGG 183 |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 GATTTGGTCTGTAGAATGCATAAGCTTGTCGGTGACAGGTGGGAATTGATAGCTGGGAGG 180 Query 184 ATCCCAGGAAGAACCGCTGGAGAAATTGAGAGGTTTTGGGTCATGAAAAATTGAAAAGTG 243 ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| Sbjct 181 ATCCCAGGAAGAACCGCTGGAGAAATTGAGAGGTTTTGGATGATGAAAA-TTGAAAAGTG 239 Query 244 A 244 | Sbjct 240 A 240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12209788480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5