BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01070.1 Length=1858 Score E Sequences producing significant alignments: (Bits) Value Ahg490463 jgi|Araly1|490463|fgenesh2_kg.6__3597__AT4G01070.1 2713 0.0 Ahg470140 jgi|Araly1|470140|fgenesh2_kg.1__94__AT1G01390.1 719 0.0 Ahg900600 jgi|Araly1|900600|Al_scaffold_0004_1250 80.5 4e-14 > Ahg490463 jgi|Araly1|490463|fgenesh2_kg.6__3597__AT4G01070.1 Length=1810 Score = 2713 bits (1469), Expect = 0.0 Identities = 1712/1826 (94%), Gaps = 29/1826 (2%) Strand=Plus/Plus Query 3 TGATTCACACAAACTCTCTATATAAAGCCA-TTACTTAATACCACACAAATTACaaaaaa 61 ||||||| |||| ||||||||||||||||| ||||| |||||| |||||||||| | Sbjct 1 TGATTCAGACAAGCTCTCTATATAAAGCCATTTACTCAATACCTCACAAATTAC-----A 55 Query 62 aaaaagaaaaaaggagataataatcacaaactacaaaagtagaaagaagaaaaaagaaca 121 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | Sbjct 56 AAAAAGAAAAAAGGAGATAATAATCACAAACTACAAAAGTAGAAAG-AG--AAAAGAAAA 112 Query 122 aag-T-ATCAGTTCTTGAATATTTGCATCAATGGAGGAATCCAAAA-CACCTCACGTTGC 178 ||| | |||||||||||||| ||||||||||||||||||| ||||| | |||| ||||| Sbjct 113 AAGATCATCAGTTCTTGAATCTTTGCATCAATGGAGGAAT-CAAAAGCGTCTCATGTTGC 171 Query 179 GATCATACCAAGTCCGGGAATGGGTCATCTCATACCACTCGTCGAGTTTGCTAAACGACT 238 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 172 GATCATACCAAGTCCGGGAATGGGTCATCTCATCCCACTCGTCGAGTTCGCTAAACGACT 231 Query 239 CGTCCATCTTCACGGCCTCACCGTTACCTTCGTCATCGCCGGCGAAGGTCCACCATCAAA 298 ||| || | ||||||| ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 232 CGTTCAACGTCACGGCTTCACCGTTACCTTCGTCATCGCCGGGGAAGGTCCACCGTCAAA 291 Query 299 AGCTCAGAGAACCGTCCTCGActctctcccttcttcaatctcctccgtctttctccctcc 358 |||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 292 AGCTCAGAGAACCGTCCTTGACTCTCTCCCTTCTTCGATCTCATCCGTCTATCTCCCTCC 351 Query 359 tgttgatctcaccgatctctcttcGTCCACTCGCATCGAATCTCGGATCTCCCTCACCGT 418 |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 352 CGTTGATCTCAGCGATCTATCTTCGTCCACTCGCATCGAATCTCGGATCTCCCTCACCGT 411 Query 419 GACTCGTTCAAACCCGGAGCTCCGGAAAGTCTTCGACTCGTTCGTGGAGGGAGGTCGTTT 478 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 412 GACTCGTTCAAACCCGGAGCTCCGGAAAGTCTTCGACTCGTTCGCGGCGGGAGGTCGTTT 471 Query 479 GCCAACGGCGCTCGTCGTCGATCTCTTCGGTACGGACGCTTTCGACGTGGCCGTAGAATT 538 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 GCCGACGGCGCTCATCGTCGATCTCTTCGGTACGGACGCTTTCGACGTGGCCGTAGAATT 531 Query 539 TCACGTGCCACCGTATATTTTCTACCCAACAACGGCCAACGTCTTGTCGTTTTTTCTCCA 598 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 CCACGTGTCACCGTATATTTTCTACCCAACAACGGCCAACGTCTTGTCGTTTTTTCTCCA 591 Query 599 TTTGCCTAAACTAGACGAAACGGTGTCGTGTGAGTTCAGGGAATTAACCGAACCGCTTAT 658 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 TTTGCCTAAACTAGACGAAACGGTGTCGTGTGAGTTCAGGGAATTAACCGAACCGCTTAA 651 Query 659 GCTTCCTGGATGTGTACCGGTTGCCGGGAAAGATTTCCTTGACCCGGCCCAAGACCGGAA 718 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 652 GCTCCCTGGATGTGTACCGGTCGCCGGGAAAGATTTCCTTGACCCGGCCCAAGACCGGAA 711 Query 719 AGACGATGCATACAAATGGCTTCTCCATAACACCAAGAGGTACAAAGAAGCCGAAGGTAT 778 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 712 AGACGATGCATACAAATGGCTTCTCCATAACACCAAGAGGTACAAAGAAGCTGAAGGGAT 771 Query 779 TCTTGTGAATACCTTCTTTGAGCTAGAGCCAAATGCTATAAAGGCCTTGCAAGAACCGGG 838 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 772 TCTTGTGAATACCTTCTTTGAGCTAGAGCCAAATGCTATAAAGGCCTTGCAAGAACCAGG 831 Query 839 TCTTGATAAACCACCGGTTTATCCGGTTGGACCGTTGGTTAACATTGGTAAGCAAGAGGC 898 ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 832 TCTAGATAAACCACCCGTTTATCCGGTTGGACCGTTGGTTAACATCGGTAAGCAAGAGGC 891 Query 899 TAAGCAAACCGAAGAGTCTGAATGTTTAAAGTGGTTGGATAACCAGCCGCTCGGTTCGGT 958 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 TAAACAAACTGAAGAGTCTGAATGTTTAAAGTGGTTGGATAACCAGCCGCTCGGTTCGGT 951 Query 959 TTTATATGTGTCCTTTGGTAGTGGCGGTACCCTCACATGTGAGCAGCTCAATGAGCTTGC 1018 ||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 952 TTTGTACGTGTCCTTTGGTAGTGGCGGTACACTCACATGTGAACAGCTCAATGAGCTTGC 1011 Query 1019 TCTTGGTCTTGCAGATAGTGAGCAACGGTTTCTTTGGGTCATACGAAGTCCTAGTGGGAT 1078 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1012 TCTTGGTCTTGCAGATAGTGAGCAACGGTTTCTTTGGGTCATACGAAGTCCAAGTGGGAT 1071 Query 1079 CGCTAATTCGTCGTATTTTGATTCACATAGCCAAACAGATCCATTGACATTTTTACCACC 1138 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1072 TGCTAATTCGTCGTATTTCGATTCACATAGCCAAACCGATCCATTGACATTTTTACCACC 1131 Query 1139 GGGATTTTTAGAGCGGACTaaaaaaaGAGGTTTTGTGATCCCTTTTTGGGCTCCACAAGC 1198 ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1132 AGGATTTTTAGAGCAGACCAAAAACAGAGGTTTTGTGATCCCTTTTTGGGCTCCACAAGC 1191 Query 1199 CCAAGTCTTGGCGCATCCATCCACGGGAGGATTTTTAACTCATTGTGGATGGAATTCGAC 1258 ||||||||| || ||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1192 CCAAGTCTTAGCACATCCATCCACGGGAGGGTTTTTAACTCATTGCGGATGGAATTCGAC 1251 Query 1259 TCTAGAGAGTGTAGTAAGCGGTATTCCACTTATAGCATGGCCATTATACGCAGAACAGAA 1318 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1252 TCTAGAGAGTGTAGTAAGCGGTATTCCACTTATAGCATGGCCATTATACGCTGAGCAGAA 1311 Query 1319 GATGAATGCGGTTTTGTTGAGTGAAGATATTCGTGCGGCACTTAGGCCGCGTGCCGGGGA 1378 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 1312 GATGAATGCGGTTTTGTTGAGTGAAGATATTCGTGCGGCACTTAGGCCTCATGCCGCGGA 1371 Query 1379 CGATGGGTTAGTTAGAAGAGAAGAGGTGGCTAGAGTGGTAAAAGGATTGATGGAAGGTGA 1438 |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1372 CGATGGGTTAGTGAGTAGAGAAGAGGTGGCAAGAGTGGTAAAAGGATTGATGGAAGGTGA 1431 Query 1439 AGAAGGCAAAGGAGTGAGGAACAAGATGAAGGAGTTGAAGGAAGCAGCTTGTAGGGTGTT 1498 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1432 AGAAGGCAAAGGAGTGAGGAACAAGATGAAGGAATTGAAGGAAGCAGCTTGTAGGGTGTT 1491 Query 1499 GAAGGATGATGGGACTTCGACAAAAGCACTTAGTCTTGTGGCCTTAAAGTGGAAAGCCCA 1558 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1492 GAAGGATGATGGGTCTTCCACAAAAGCACTTAGTCTTGTGGCCTTAAAGTGGAAAGCCCA 1551 Query 1559 CAAAAAAGAGTTAGAGCAAAATGGCAACCACTAAATATTTGATGTTCTAATATGATTTGT 1618 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1552 CAAAAAAGAGTTAGAGCAAAATGGCAACCACTAAATATTTGATGGTCTAATATGATTTGT 1611 Query 1619 ATAATCAACGGTGGGATTTGTGCAAATGTGTTTCTGTATGTATATGTATGTTCTACTTTT 1678 |||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||| Sbjct 1612 ATAATCAACGGTCGGATTTGTGCAAATGTGTTTCTGTATGTATG-GC-TGTTCAACTTTT 1669 Query 1679 CTTTGCTTCGT-T-TGTCTCAACTTTTATTTGTATATGTTTTT--GGCTTTTGATTAATT 1734 |||||| |||| | ||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1670 CTTTGCATCGTATCTGTCTCAACTTTTATTTGTATATGTTTTTTTGGCTTTTGATCAATT 1729 Query 1735 CGTA-GA---AGATGTTGCAATTAAGATCAGCTTAGAAGAAGATGTTGCATATATAGTTA 1790 |||| | | ||| ||||||||||||| || |||||||||||| ||| || || | Sbjct 1730 CGTAAGTTTTACATGGTGCAATTAAGATCCGCCTAGAAGAAGATGGTGCGTAG-TAC--A 1786 Query 1791 AATATTGTTCAAGAGAA-TCATCAAT 1815 | |||||||||||| || || ||||| Sbjct 1787 A-TATTGTTCAAGA-AACTCGTCAAT 1810 > Ahg470140 jgi|Araly1|470140|fgenesh2_kg.1__94__AT1G01390.1 Length=1572 Score = 719 bits (389), Expect = 0.0 Identities = 1032/1339 (77%), Gaps = 57/1339 (4%) Strand=Plus/Plus Query 180 ATCATACCAAGTCCGGGAATGGGTCATCTCATACCACTCGTCGAGTTTGCTAAACGACTC 239 |||||||| ||||| ||||||||||| ||||| ||| |||||||||| ||||| |||||| Sbjct 43 ATCATACCGAGTCCCGGAATGGGTCACCTCATCCCATTCGTCGAGTTAGCTAAGCGACTC 102 Query 240 GTCCATCTTC-ACGGCCTCACCGTTACCTTCG-TCATCGCCGGCGAAGGTCCACCATCAA 297 || | | | || | ||||| | || || | ||||| || | ||| | | || || | Sbjct 103 GTTGAGC-ACGACTGTTTCACCATCACATT-GATCATCTCCAGTGAATCTTCGCCGTCTA 160 Query 298 AAGCTCAGAGAA-CCGTCCTCGActctctcccttcttcaatctcctccgtctttctccct 356 | || || | || |||| ||| ||||||||||||| || || ||||||| ||||||||| Sbjct 161 AGGCACA-AAAATCCGTTCTCAACTCTCTCCCTTCCTCCATAGCCTCCGTATTTCTCCCT 219 Query 357 cctgttgatctcaccgatctctcttcGTCCACT---CGCATCGAATCTCGGATC-TCCCT 412 || | ||||| ||||| | || | |||||| || |||||| ||||| || | || Sbjct 220 CCCGCCGATCTTTCCGATGT-TC--CCTCCACTGCACGAATCGAAACTCGGGTCAT-GCT 275 Query 413 CACCGTGACTCGTTCAAACCCGGAGCTCCGGAAAG-TCTTCGACTCGTTCGTGGAGGGAG 471 |||| |||||||||| || |||| ||||||| || | || | ||| || | | | || Sbjct 276 CACCATGACTCGTTCCAATCCGGCGCTCCGG-GAGCTTTTTGGCTCCTT-ATCAACGAAG 333 Query 472 -GTCGTTTGCCAACGGCGCTCGTCGTCGATCTCTTCGGTACGGACGCTTTCGACGTGGCC 530 ||| | || ||| |||||||||||| | || |||||||| |||||||| |||||| Sbjct 334 AAACGTCTCCCGGCGGTTCTCGTCGTCGATATGTTTGGTACGGATGCTTTCGATGTGGCC 393 Query 531 GTAGAATTTCACGTGCCACCGTATATTTTCTACCCAACAACGGCCAACGTCTTGTCGTTT 590 || || || |||||| |||| || |||||||| || ||| |||||||||||||||||| Sbjct 394 GTTGACTTCCACGTGTCACCATACATTTTCTATGCATCAAATGCCAACGTCTTGTCGTTT 453 Query 591 TTTCTCCATTTGCCTAAACTAGACGAAACGGTGTCGTGTGAGTTCAGGGAATTAACCGAA 650 ||||| || ||||| ||||| ||||||||||||||||||||||| ||| | ||||||||| Sbjct 454 TTTCTTCACTTGCCGAAACTTGACGAAACGGTGTCGTGTGAGTTTAGGTACTTAACCGAA 513 Query 651 CCGCTTATGCTTCCTGGATGTGTACCGGTTGCCGGGAAAGA-TTTCCTTGACCCGGCCCA 709 ||| ||| | |||| || ||||| ||||| |||| || || ||| ||||| ||| || Sbjct 514 CCGGTTAAGATTCCCGGCTGTGTCCCGGTAACCGGTAAGGACTTT-CTTGATACGGTTCA 572 Query 710 AGACCGGAAA-GACGATGCATACAAATGGCTTCTCCATAACACCAAGAGGTACAAAGAAG 768 ||||| |||| ||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 573 AGACC-GAAACGACGACGCATACAAATTGCTTCTCCATAACACCAAGAGGTACAAAGAAG 631 Query 769 CCGAAGGTATTCTTGTGAATACCTTCTTTGAGCTAGAGCCAAATGCTATAAAGGCCTTGC 828 | |||| ||||| |||||| | ||| | || ||||||| |||||||||||||| || | Sbjct 632 CTAAAGGGATTCTAGTGAATTCATTCATCGATTTAGAGCCGAATGCTATAAAGGCTTTAC 691 Query 829 AAGAACCGGGTCTTGATAAACCACCGGTTTATCCGGTTGGACCGTTGGTTAACATTGGTA 888 ||||||||| || ||||||||||| |||||| || |||| ||| ||||||||| || Sbjct 692 AAGAACCGGCTCCTGATAAACCACTGGTTTACCCAATTGGCCCGCTGGTTAACACAAGTT 751 Query 889 -AGCAAGAGGCTAA-GC--AAACCGAAGAGTCTGAATGTTTAAAGTGGTTGGATAACCAG 944 | | || | ||| | ||| | ||| || ||||||||| | ||| | || || || Sbjct 752 CATCT-GATGTTAACGTGGAAAAC-AAG--TCCGAATGTTTAGATTGGCTAGACAAGCAA 807 Query 945 CCGCTCGGTTCGGTTTTATATGTGTCCTTTGGTAGTGGCGGTACCCTCACATGT-GAGCA 1003 || |||| |||||| ||||| | || ||||| || ||||| || |||||| || ||||| Sbjct 808 CCATTCGGCTCGGTTCTATATATATCATTTGGAAGCGGCGGAACACTCACA-GTTGAGCA 866 Query 1004 GCTCAATGAGCTTGCTCTTGGTCTTGCAGATAGTGAGCAACGGTTTCTTTGGGTCATACG 1063 | |||||||||||||||||||||||||||| || || |||||||| |||||| |||||| Sbjct 867 GTTCAATGAGCTTGCTCTTGGTCTTGCAGAGAGCGATAAACGGTTTATTTGGGCCATACG 926 Query 1064 AAGTCCTAGTGG-GATCGCTAATTCGTCGTATTTTGATTCACATAGCCAAACAGATCCAT 1122 |||||| || || | | |||| |||||| ||||| || |||| |||||||| || || | Sbjct 927 AAGTCCAAGCGGAG-TAGCTAGTTCGTCATATTTCAATCCACACAGCCAAACCGACCCCT 985 Query 1123 TGACATTTTTACCACCGGGATTTTTAGAGCGGACTaaaaa-aaGAGGTTTTGTGATCCCT 1181 | | ||||||||| ||||| ||||| || || ||| | || |||| | ||| | | Sbjct 986 TTTCGTTTTTACCAATTGGATTCTTAGACCGAACCAAAGAGAA-AGGTCTGGTGGTTCGG 1044 Query 1182 TTTTGGGCTCCACAAGCCCAAGTCTTGGCGCATCCATCCACGGGAGGATTTTTAACTCAT 1241 | ||||||||||| | ||| || |||| ||||||||||| | || |||||||| || Sbjct 1045 TCATGGGCTCCACAGGTTCAAATCCTGGCTCATCCATCCACATGCGGGTTTTTAACACAC 1104 Query 1242 TGTGGATGGAATTCGACTCT-AGAGAGTGTAGTAAGCGGTATTCCACTTATAGCATGGCC 1300 ||||||||||||||||| || ||| || | |||| |||| | ||||| ||||||||||| Sbjct 1105 TGTGGATGGAATTCGAC-CTTAGAAAGCATTGTAAACGGTGTACCACTCATAGCATGGCC 1163 Query 1301 ATTATACGCAGAACAGAAGATGAATGCGGTT--TTGTTGAGTGAAGATATTCGTGCGGCA 1358 |||| || || || ||||||||||| || || | | | || ||| || | ||||| Sbjct 1164 TTTATTTGCGGAGCAAAAGATGAATGCA-TTGCTTCTCGTG-GAGGATGTTGGAGCGGCT 1221 Query 1359 CTTAGGC-CGCGTGCCGG-GGACGATGGG-TTAGTTA-GAAGAGAAGAGGTGGCT-AGAG 1413 || || | | ||| || ||| |||||| || || | | || ||||| |||| | |||| Sbjct 1222 CTAAGAATC-CATGCGGGTGGA-GATGGGATT-GT-ACGGAGGGAAGAAGTGG-TGAGAG 1276 Query 1414 TGGTAAAAGGATTGATGGAAGGTGAAGAAGGCAAAGG-AGTGAGG-AACAAGATGAAGGA 1471 |||| || ||| |||||||||| |||||||| |||| | | ||| || || |||||||| Sbjct 1277 TGGTGAAGGGACTGATGGAAGGAGAAGAAGGAAAAGCCA-T-AGGGAATAAAATGAAGGA 1334 Query 1472 GTTGAAGGAAGCAGCTTGT 1490 |||||| ||| || |||| Sbjct 1335 GTTGAAACAAGGAG-TTGT 1352 > Ahg900600 jgi|Araly1|900600|Al_scaffold_0004_1250 Length=714 Score = 80.5 bits (43), Expect = 4e-14 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 1009 ATGAGCTTGCTCTTGGTCTTGCAGATAGTGAGCAACGGTTTCTTTGGGTCATACG 1063 |||| |||||||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 1 ATGACCTTGCTCTTGGTCTTGAAAAAAGTGAGCAACGGTTTCTTTGGGTCATACG 55 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69781328840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5