BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01080.1 Length=1583 Score E Sequences producing significant alignments: (Bits) Value Ahg490462 jgi|Araly1|490462|fgenesh2_kg.6__3596__AT4G01080.1 2143 0.0 > Ahg490462 jgi|Araly1|490462|fgenesh2_kg.6__3596__AT4G01080.1 Length=1405 Score = 2143 bits (1160), Expect = 0.0 Identities = 1325/1403 (94%), Gaps = 18/1403 (1%) Strand=Plus/Plus Query 1 CACTGTGCTCTCTTCTTCAATGGAACAACAATTAACCTTAGTATTGCTTGATAGCCCAAA 60 |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| | Sbjct 1 CACTGTTCTCTCTTCTTCAATGGAACAACAATTAACATTCGTATTGCTTGATAGCCCAGA 60 Query 61 AGGCGCCAAATATGT---AGAAACCTTTGAAGAAGCCGcttcttcttcttcttcttcttc 117 |||||| |||||||| ||||||| | ||||| || ||||||||||||||||||| Sbjct 61 AGGCGCGAAATATGTAGAAGAAACC-CT--AGAAGTCG---CTTCTTCTTCTTCTTCTTC 114 Query 118 ttcttcttctGTTCCCTCCTGCACTGATCACCGCCATCGAACCTTCGTCAAATTCTTCCT 177 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 115 TTCTTCTTCTGTTCCCTCCTCCACTGATCACCGCCATCGAACCTTCGTCAAATTCTTCGT 174 Query 178 TTACTTCTCTCTCGTCGCTCTTGCTTACTATTTCATCATCTCCAGTCTCGCCGTCTCTCC 237 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 175 TTACTTCTCTCTCGTCGCTCTCGCTTACTATTTCATCATCTCCAGTTTCGCCGTCTCTCC 234 Query 238 AATTCCCCCAACATTG-C-C-GCAATCTTCTCCCGGAAACGTTTCATCAGCAAAGTGTGA 294 |||| ||||||| ||| | | |||||||||| |||||||||||||||||||||||||||| Sbjct 235 AATTTCCCCAACGTTGCCGCAGCAATCTTCTTCCGGAAACGTTTCATCAGCAAAGTGTGA 294 Query 295 TCTTTTCACCGGAGATTGGATACCAGATCCAACAGGTCCTCTGTACACAAATGTCACTTG 354 ||||||||||||||||||| | || |||||||||||||||||||||||||||||| |||| Sbjct 295 TCTTTTCACCGGAGATTGGGTTCCGGATCCAACAGGTCCTCTGTACACAAATGTCTCTTG 354 Query 355 TCGTCACATTCAAGATTTTCAGAACTGCCTATTGAATGGACGACCAGATGTGAATTATCT 414 || |||||||||||||||||||||||| |||||||||||||| |||||||||||||| || Sbjct 355 TCATCACATTCAAGATTTTCAGAACTGTCTATTGAATGGACGGCCAGATGTGAATTACCT 414 Query 415 CTTCTGGAGATGGAAGCCTCGTGATTGTGATCTTCCTAGGTTTAGTCCATCGCAGTTTCT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 CTTCTGGAGATGGAAGCCTCGTGATTGTGATCTTCCTAGGTTTAGTCCATCGCAGTTTCT 474 Query 475 TGCTTCAGTGAAGAACAAATGGTGGGCTTTTATCGGTGATTCCATTGCTCGTAATCATGT 534 || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 475 TGATTCAGTGAAGAACAAATGGTGGGCTTTTATCGGTGATTCCATAGCTCGTAACCATGT 534 Query 535 CCAGTCTCTCATCTGCATTCTCTCTCAGGTGGAAGAAGTGGAGGAAATCTATCACGATAA 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 CCAGTCTCTCATCTGCATTCTCTCTCAGGTGGAAGAAGTGGAGGAAATCTATCACGATAA 594 Query 595 GGAGTTCAGATCCAAGATATGGAGATTCCCTTCTCACAACTTCACACTATCAGTCATTTG 654 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 595 GGAGTTCAGATCCAAGATATGGAGATTCCCTTCTCACAACTTCACACTTTCTGTCATTTG 654 Query 655 GTCTCCTTTCCTTCTCAAATCCGAAACATCTAGCAACTCGGATATTCAGCTTTACCTCGA 714 |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || Sbjct 655 GTCTCCTTTCCTTCTCAAATCCGAAACATCTAGCGACTCGGATATCCAGCTTTACCTTGA 714 Query 715 CCAGCTTGACCACAAATGGACTGTCCAATACCCGAAATTCGACTACGTTGTTATCTCTGG 774 ||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 715 TCAGCTCGACCACAAATGGACCGTCCAATACTCGAAATTCGACTACGTTGTTATCTCTGG 774 Query 775 AGGCAAATGGTTTCTTAAAACAACAAT-TTTCCATGAAAACAACGTAGTCACGGGCTGTC 833 ||||||||||||||||||||| ||||| |||| |||||||||||| |||||| ||||||| Sbjct 775 AGGCAAATGGTTTCTTAAAACCACAATATTTC-ATGAAAACAACGCAGTCACAGGCTGTC 833 Query 834 ATTACTGCCAAGGAAGAAACAACCTAACTGATCTCGGCTATGATTACTCCTACCGCAAAA 893 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 834 ATTACTGCCAAGGAAGAAACAACCTAACTGATCTCGGCTACGATTACTCCTACCGCAAAA 893 Query 894 CCCTAAACCTTCTCCGTGACTTCGTCCTAAACTCAACCCACAAACCGCTGGTTCTGTTTC 953 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 894 CCCTTAACCTTCTCCGTGACTTCGTCCTAAACTCAAACCACAAACCGCTGGTTCTGTTCC 953 Query 954 GAACAACAACGCCTGACCATTTCGAAAACGGAGAGTGGAACACTGGTGGGTATTGCAACA 1013 |||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 954 GAACTACAACACCTGACCATTTTGAAAATGGAGAGTGGAACACTGGTGGGTATTGCAACA 1013 Query 1014 GAACGATGCCGTTTAAAGAAGGC-CAAGCAAATATGAAAACTGTAGATGATGTGATGCGT 1072 ||||||||||||||||||||| | || ||||| |||||||| || ||||||||||||||| Sbjct 1014 GAACGATGCCGTTTAAAGAAG-CTCAGGCAAAAATGAAAACCGTTGATGATGTGATGCGT 1072 Query 1073 GATGTTGAGCTTGAGGTGTTTCAGAAATTTGGGAAAGGTTTTGGCTTAGGTTCCAACATC 1132 ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 1073 GATGTTGAGCTTGAGGTGTTTCAGAAATTCGGGAAAGGTTTCGGTTTAGGTTCCAACATC 1132 Query 1133 AGGCTATTAGACACGACTGGAATGTCTCTTCTCCGTCCAGACGGGCATCCGGGACCATAC 1192 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1133 AGACTATTAGACACGACTGGAATGTCTCTTCTCCGTCCAGACGGGCATCCGGGACCGTAC 1192 Query 1193 CGGCATCCAAATCCTTTTGCTGGAGTTAAGAATAAGAGCAATGTTCAGAATGATTGTCTG 1252 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1193 CGGCATCCAAATCCTTTTGCTGGAGTTAAGAATAAGAGCCATGTTCAGAATGATTGTCTG 1252 Query 1253 CATTGGTGCTTACCTGGTCCAATTGATTCATGGAATGATGTGATGGTGGAAACCACGCTT 1312 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1253 CATTGGTGCTTACCTGGTCCAATTGATTCATGGAATGATGTGATGGTCGAAACCACGCTT 1312 Query 1313 AACCGGGAACGGGAACTATACGATTTAACCGGTTAATGTACCACGATATCGCTTGTAGCT 1372 ||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||||| Sbjct 1313 AACAGGGAACGGGAACTATACGATTTAACCGGTTAAGGTACCACGATGTTGCTTGTAGCT 1372 Query 1373 AGTTACAGTC-A-ATAGCCATTC 1393 |||||||||| | |||||||||| Sbjct 1373 AGTTACAGTCTATATAGCCATTC 1395 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59306511465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5