BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01120.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895903 jgi|Araly1|895903|Al_scaffold_0006_3899 837 0.0
> Ahg895903 jgi|Araly1|895903|Al_scaffold_0006_3899
Length=1122
Score = 837 bits (453), Expect = 0.0
Identities = 550/596 (92%), Gaps = 9/596 (2%)
Strand=Plus/Plus
Query 638 AGCTCCGAGAATGATGGCTCTAGCAATGGTAGTGATG-----GTAATAC--AACTGGGGG 690
||||||||||||||||||||||||||||| ||||||| || | | | | |||
Sbjct 528 AGCTCCGAGAATGATGGCTCTAGCAATGGCAGTGATGTATTCGTCTTTCTTACCACAGGG 587
Query 691 AGAACAATCTAGGAGGAAAAGAAGGCAACAAAGATCACCAAGCACTGGTGAAAGACCCTC 750
||| |||||| ||||||||| ||||| | |||||||||||||||| ||||||||||||||
Sbjct 588 AGAGCAATCTCGGAGGAAAATAAGGCGAGAAAGATCACCAAGCACCGGTGAAAGACCCTC 647
Query 751 ATCTCAAAACAGT-CTGCCTCTTAGAGGTGAAAATGAGAAACCCGATGTGACTATGGGGA 809
|||||||| || | || |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 648 ATCTCAAACCACTCCT-CCTCTTAGAGGTGAAAATGAGAAAGCCGATGTGACCATGGGGA 706
Query 810 CTCCTGTTATGCCCACAGCAATGAGTTTCCAAAACTCTGCTGGCATGAACGGTGTGCCAC 869
|||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 707 CTCCCGTTATGCCCACAACAATGGGTTTCCAAAACTCTGCTGGCATGAACGGTGTCCCAC 766
Query 870 AGCCATGGAATGAAAAAGAGGTTAAACGAGAGAAGAGAAAACAGTCAAACCGAGAATCTG 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 AGCCATGGAATGAAAAAGAGGTTAAACGAGAGAAGAGAAAACAGTCAAACCGAGAATCTG 826
Query 930 CTAGGAGGTCAAGACTGAGGAAGCAGGCTGAAACAGAACAACTATCTGTCAAAGTTGACG 989
|||| ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 827 CTAGAAGGTCGAGACTGAGAAAGCAGGCTGAAACTGAACAACTCTCTGTCAAAGTTGACG 886
Query 990 CATTAGTAGCTGAGAACATGTCTCTGAGGTCTAAACTAGGCCAGCTAAACAATGAGTCTG 1049
|| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 887 CACTAGTAGCTGAGAACATGACTCTGAGGTCCAAACTAGGCCAGCTAAACAATGAGTCTG 946
Query 1050 AGAAACTACGGCTGGAGAACGAAGCTATATTGGATCAACTGAAAGCGCAAGCAACAGGGA 1109
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 947 AGAAACTACGGCTGGAGAACGAAGCTTTATTGGATCAACTGAAAGCGCAAGCAACTGGGA 1006
Query 1110 AAACAGAGAACCTGATCTCTCGAGTTGATAAGAACAACTCTGTATCAGGTAGCAAAACTG 1169
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1007 AAACAGAGAACCTTATCTCTCGAGTTGATAAGAACAACTCTGTATCAGGTAGCAAAAATG 1066
Query 1170 TGCAGCATCAACTGTTAAATGCAAGTCCGATAACCGATCCTGTCGCGGCTAGCTGA 1225
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1067 TGCAGCATCAACTGTTAAATGCAAGTCCAATAACAGATCCTGTCGCGGCCAGCTGA 1122
Score = 798 bits (432), Expect = 0.0
Identities = 476/497 (96%), Gaps = 3/497 (1%)
Strand=Plus/Plus
Query 143 ATGGGTAGCAACGAAGAAGGAAACCCCACTAACAACTCTGATAAGCCATCGCAAGCTGCT 202
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 1 ATGGGTAGCAACGAAGAAGGAAAACCCAC--A-AACTCTGATAAGCCATCGCAAGCTGCT 57
Query 203 GCTCCTGAGCAGAGTAATGTTCATGTGTATCATCATGACTGGGCTGCTATGCAGGCATAT 262
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GCTCCTGAGCAGGGTAATGTTCATGTGTATCATCATGACTGGGCTGCTATGCAGGCATAT 117
Query 263 TATGGGCCTAGAGTTGGTATACCTCAATATTACAACTCAAATTTGGCGCCTGGTCATGCT 322
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 118 TATGGGCCTAGAGTTGGTATACCTCAATATTACAACTCAAATGTGGCGCCTGGTCATGCT 177
Query 323 CCACCGCCTTATATGTGGGCGTCTCCATCGCCAATGATGGCTCCTTATGGAGCACCATAT 382
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 178 CCACCCCCTTATATGTGGGCTTCTCCATCGCCAATGATGGCTCCTTATGGGGCACCATAT 237
Query 383 CCACCATTTTGCCCTCCTGGTGGAGTTTATGCTCATCCTGGTGTTCAAATGGGCTCACAA 442
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCACCGTTTTGCCCTCCTGGTGGAGTTTATGCTCATCCTGGTGTTCAAATGGGCTCACAA 297
Query 443 CCACAAGGTCCTGTTTCTCAATCAGCATCTGGAGTTACAACCCCTTTGACCATTGATGCA 502
| ||||||||||||||||||| || || |||| |||||||| ||||||||||| ||||||
Sbjct 298 CTACAAGGTCCTGTTTCTCAAGCAACACCTGGTGTTACAACTCCTTTGACCATGGATGCA 357
Query 503 CCAGCTAATTCAGCTGGAAACTCAGATCATGGGTTCATGAAAAAGCTGAAAGAGTTCGAT 562
||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 358 CCAACTAATTCAGCTGGAAACTCGGATCACGGGTTCATGAAAAAACTGAAAGAGTTCGAT 417
Query 563 GGACTTGCAATGTCAATAAGCAATAACAAAGTTGGGAGTGCTGAACATAGCAGCAGTGAA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGACTTGCAATGTCAATAAGCAATAACAAAGTTGGGAGTGCTGAACATAGCAGCAGTGAA 477
Query 623 CATAGGAGTTCTCAGAG 639
|||||||||||||||||
Sbjct 478 CATAGGAGTTCTCAGAG 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5