BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G01150.1

Length=821
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943629 jgi|Araly1|943629|scaffold_604173.1                        998    0.0  


> Ahg943629 jgi|Araly1|943629|scaffold_604173.1
Length=636

 Score =  998 bits (540),  Expect = 0.0
 Identities = 608/639 (95%), Gaps = 12/639 (2%)
 Strand=Plus/Plus

Query  125  gaagTTCTCGGCGTGCTTCAATGGCGATATCAGTAGCAGCTTCGTCCTCTATGGCCGTGA  184
            |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    GAAGTTATCGGTGTGCTTCAATGGCGATATCAGTAGCAGCTTCGTCCTCTGTGGCCGTGA  60

Query  185  TGGTTCCACGTGTTCCCGCCGTATCCACCCGTTGCTCCGCCGTCCCTTA------T---C  235
            | ||||||||||| |||||| | ||||||||||||||||||| ||||||      |   |
Sbjct  61   TAGTTCCACGTGTCCCCGCCATCTCCACCCGTTGCTCCGCCGCCCCTTACCTTCCTCCGC  120

Query  236  TTCCTCCTCGCTCCTTTGGCCGATCCTCTTTCACCGTTCCGTTGAAGCTTGTTTCAGGGA  295
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  121  TTCCTCCTCGCTCCTTTGGCCGATCCTCTTTCACCGTTCCGTTGAAGCTAGTTTCAGGGA  180

Query  296  ATGGATTGCAAAAAGTTGAATTGTTGAAGACAAGAGCTTCTTCAGAAGAGACCTCGTCCA  355
            ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct  181  ATGGATTGCAAAAAGTTGAATTGATGAAGACAAGAGCTTCCTCAGAAGACACCTCGTCCA  240

Query  356  TTGATACCAACGAACTCATCACAGATTTGAAGGAAAAGTGGGATGGTCTTGAGAACAAAT  415
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TTGACACCAACGAACTCATCACAGATTTGAAGGAAAAGTGGGATGGTCTTGAGAACAAAT  300

Query  416  CTACTGTACTTATATATGGAGGAGGAGCCATTGTTGCTGTTTGGTTATCTTCCATTGTTG  475
            | ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CGACTGTACTCGTATATGGAGGAGGAGCCATTGTTGCTGTTTGGTTATCTTCCATTGTTG  360

Query  476  TTGGTGCCATCAACTCTGTTCCTCTGCTTCCGAAAGTTATGGAACTTGTCGGTCTCGGGT  535
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  361  TTGGTGCCATCAACTCTGTTCCTCTGCTTCCGAAAGTAATGGAACTTGTCGGTCTCGGGT  420

Query  536  ACACTGGATGGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAGGAATTGGCTG  595
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  ACACCGGATGGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAGGAATTGGCTG  480

Query  596  AGGATATTGAATCCTTGAAGAAGAAGATCGCAGGAAGCGAATAGATTCATTTTCAAATAA  655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  AGGATATTGAATCCTTGAAGAAGAAGATCGCAGGAAGCGAATAGATTCATTTTCAAATAA  540

Query  656  AACCAGCTTTCTCTCTGTATGTTTTCCTGTAATATCGTGTTATATTATACAATGTCTCTG  715
            | |||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct  541  A-CCAGCTTTCTTTCTGTATGTTTTCCTGTAATATCGTGTTAT-T-ATACAATGTCTCTG  597

Query  716  TTTCAACATTGTATCTGTTGCATCTGAAACTATTATCTT  754
            |||||||||||||||||||||||||||||||||||||||
Sbjct  598  TTTCAACATTGTATCTGTTGCATCTGAAACTATTATCTT  636



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30345841932


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5