BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01150.1 Length=821 Score E Sequences producing significant alignments: (Bits) Value Ahg943629 jgi|Araly1|943629|scaffold_604173.1 998 0.0 > Ahg943629 jgi|Araly1|943629|scaffold_604173.1 Length=636 Score = 998 bits (540), Expect = 0.0 Identities = 608/639 (95%), Gaps = 12/639 (2%) Strand=Plus/Plus Query 125 gaagTTCTCGGCGTGCTTCAATGGCGATATCAGTAGCAGCTTCGTCCTCTATGGCCGTGA 184 |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 GAAGTTATCGGTGTGCTTCAATGGCGATATCAGTAGCAGCTTCGTCCTCTGTGGCCGTGA 60 Query 185 TGGTTCCACGTGTTCCCGCCGTATCCACCCGTTGCTCCGCCGTCCCTTA------T---C 235 | ||||||||||| |||||| | ||||||||||||||||||| |||||| | | Sbjct 61 TAGTTCCACGTGTCCCCGCCATCTCCACCCGTTGCTCCGCCGCCCCTTACCTTCCTCCGC 120 Query 236 TTCCTCCTCGCTCCTTTGGCCGATCCTCTTTCACCGTTCCGTTGAAGCTTGTTTCAGGGA 295 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 121 TTCCTCCTCGCTCCTTTGGCCGATCCTCTTTCACCGTTCCGTTGAAGCTAGTTTCAGGGA 180 Query 296 ATGGATTGCAAAAAGTTGAATTGTTGAAGACAAGAGCTTCTTCAGAAGAGACCTCGTCCA 355 ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| Sbjct 181 ATGGATTGCAAAAAGTTGAATTGATGAAGACAAGAGCTTCCTCAGAAGACACCTCGTCCA 240 Query 356 TTGATACCAACGAACTCATCACAGATTTGAAGGAAAAGTGGGATGGTCTTGAGAACAAAT 415 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTGACACCAACGAACTCATCACAGATTTGAAGGAAAAGTGGGATGGTCTTGAGAACAAAT 300 Query 416 CTACTGTACTTATATATGGAGGAGGAGCCATTGTTGCTGTTTGGTTATCTTCCATTGTTG 475 | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGACTGTACTCGTATATGGAGGAGGAGCCATTGTTGCTGTTTGGTTATCTTCCATTGTTG 360 Query 476 TTGGTGCCATCAACTCTGTTCCTCTGCTTCCGAAAGTTATGGAACTTGTCGGTCTCGGGT 535 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 TTGGTGCCATCAACTCTGTTCCTCTGCTTCCGAAAGTAATGGAACTTGTCGGTCTCGGGT 420 Query 536 ACACTGGATGGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAGGAATTGGCTG 595 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ACACCGGATGGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAGGAATTGGCTG 480 Query 596 AGGATATTGAATCCTTGAAGAAGAAGATCGCAGGAAGCGAATAGATTCATTTTCAAATAA 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGGATATTGAATCCTTGAAGAAGAAGATCGCAGGAAGCGAATAGATTCATTTTCAAATAA 540 Query 656 AACCAGCTTTCTCTCTGTATGTTTTCCTGTAATATCGTGTTATATTATACAATGTCTCTG 715 | |||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 541 A-CCAGCTTTCTTTCTGTATGTTTTCCTGTAATATCGTGTTAT-T-ATACAATGTCTCTG 597 Query 716 TTTCAACATTGTATCTGTTGCATCTGAAACTATTATCTT 754 ||||||||||||||||||||||||||||||||||||||| Sbjct 598 TTTCAACATTGTATCTGTTGCATCTGAAACTATTATCTT 636 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30345841932 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5