BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01280.2 Length=1427 Score E Sequences producing significant alignments: (Bits) Value Ahg895890 jgi|Araly1|895890|Al_scaffold_0006_3886 1286 0.0 Ahg311286 jgi|Araly1|311286|fgenesh1_pm.C_scaffold_1000066 252 6e-66 > Ahg895890 jgi|Araly1|895890|Al_scaffold_0006_3886 Length=918 Score = 1286 bits (696), Expect = 0.0 Identities = 859/932 (92%), Gaps = 34/932 (4%) Strand=Plus/Plus Query 48 ATGGTGTCCGTAAACCCTAGACCTAAGGGTTTTCCAGTTTTCGATTCC-TCGAATATGAG 106 |||||||||||||||||||||||||||||||||||| | |||||| || | ||| ||||| Sbjct 1 ATGGTGTCCGTAAACCCTAGACCTAAGGGTTTTCCAATGTTCGATCCCGT-GAACATGAG 59 Query 107 TTTACCAAGCTCCGATGGATTTGGTTCGATTCCG---GCCACG-GGACGGACCA--GTAC 160 ||||||| ||||||||||||||||||| | |||| || ||| ||| ||| | || Sbjct 60 TTTACCAGGCTCCGATGGATTTGGTTCCAATCCGATTGCTACGATTCCGG-CCACCGGAC 118 Query 161 -GGTGTCGTTTTCTGAGGATCCGACGACGAAGATTCGGAAGCCGTACACAATCAAGAAGT 219 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 119 GGGTGTCGTTTTCTGAGGATCCGACTACGAAGATTCGGAAGCCGTACACAATCAAGAAGT 178 Query 220 CGAGAGAGAATTGGACAGATCAAGAGCACGATAAATTTCTAGAAGCTCTTCACTTATTCG 279 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 179 CGAGAGAGAATTGGACAGATCAAGAACACGATAAATTTCTAGAAGCTCTCCACTTATTCG 238 Query 280 ATAGGGATTGGAAGAAAATAGAAGCCTTTGTTGGATCAAAAACAGTAGTTCAGATACGAA 339 |||||||||||||||| ||||| || ||||| |||||||||||||| ||||||||||||| Sbjct 239 ATAGGGATTGGAAGAAGATAGAGGCATTTGTAGGATCAAAAACAGTGGTTCAGATACGAA 298 Query 340 GCCACGCTCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGTGCTAACGAACATCTTCCAC 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 GCCACGCTCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGTGCTAACGAACATCTTCCAC 358 Query 400 CTCCTCGACCTAAGAGGAAAGCGAGTCATCCTTATCCTATAAAGGCTCCTAAAAATGTTG 459 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CTCCTCGACCAAAGAGGAAAGCGAGTCATCCTTATCCTATAAAGGCTCCTAAAAATGTTG 418 Query 460 CTTATACCT----C-T-CTCCCGTCTTCGAGTACATTACCGTTGCTTGAGCCTGGTTATT 513 ||| ||||| | | || || |||||||| ||| |||| ||||||||||||||||||| Sbjct 419 CTTTTACCTCCCACGTCCTTCCATCTTCGAGCACACTACCTTTGCTTGAGCCTGGTTATT 478 Query 514 TGTATAGCTCTGATTCGA-AGTCATTGATGGGAAACCAGGCTGTTTGTGCATCTACCTCT 572 |||| ||||||||||| | || | ||| ||||||||||||||||||||||||||| |||| Sbjct 479 TGTACAGCTCTGATTC-ACAGCCGTTGCTGGGAAACCAGGCTGTTTGTGCATCTAGCTCT 537 Query 573 TCTTCGTGGAATCATGAATCGAC-AA--ATCTGCCAAAACCGGTGATTGAAGTAGAGGAA 629 |||||||||||||||||||| || || |||||||||||||||||||||||| |||||| Sbjct 538 TCTTCGTGGAATCATGAATCAACGAATCTTCTGCCAAAACCGGTGATTGAAGTTGAGGAA 597 Query 630 CCGGGAGTCTCGGCCACGGCTCCTCTCCCAAATAATCGCTGCAG-ACAGGAAGATACA-G 687 |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| | Sbjct 598 CCGGGAGTCTCGGCCACGGCTCCTCTCCCAAAGAATCGCTGCAGTA-AGGAAGATACACG 656 Query 688 AGAGGGTACGAGCAGTGACAAAGCCAAATAACGAAGAAAGTTGTGAAAAGCCACATAGAG 747 |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 657 -GAGGGTACGAGCAGTGACAAAGCCAAATGACGAAGAAAGTTGCGAAAAGCCACATAGAG 715 Query 748 TGATGCCGAATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTCTTCGATCCCAACACAT 807 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 716 TGATGCCGAATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTCTTTGATCCCAACACAT 775 Query 808 CAGGCCACCTCCAGAGATTAAAGCAGATGGATCCAATAAATATGGAAACGGTTCTTTTAC 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 CAGGCCACCTCCAGAGATTAAAGCAGATGGATCCAATAAATATGGAAACGGTTCTTTTAC 835 Query 868 TGATGCAAAACCTGTCTGTAAATCTGACAAGTCCCGAGTTTGCAGAGCAAAGGAGGTTGA 927 ||||||||||||||||||||||||||||||||||||||||||||||||| | | | | Sbjct 836 TGATGCAAAACCTGTCTGTAAATCTGACAAGTCCCGAGTTTGCAGAGCA--G-A--T--A 888 Query 928 TATCATCATACAGCGCTAAAGCTTTGAAATAG 959 | ||||||||||||||||||||||||||||| Sbjct 889 T--CATCATACAGCGCTAAAGCTTTGAAATAG 918 > Ahg311286 jgi|Araly1|311286|fgenesh1_pm.C_scaffold_1000066 Length=3747 Score = 252 bits (136), Expect = 6e-66 Identities = 210/246 (85%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 149 ACGGACCAGTACGGTGTCGTTTTCTGAGGATCCGACGACGAAGATTCGGAAGCCGTACAC 208 ||||| || |||| ||||||||| ||||||||| || | ||||||| ||||||| ||||| Sbjct 3102 ACGGAGCAATACGATGTCGTTTTTTGAGGATCCAACAAAGAAGATTAGGAAGCCTTACAC 3161 Query 209 AATCAAGAAGTCGAGAGAGAATTGGACAGATCAAGAGCACGATAAATTTCTAGAAGCTCT 268 |||| ||||| |||||||| ||||| || ||||| ||||| || ||||| |||||||| Sbjct 3162 TATCACCAAGTCTAGAGAGAACTGGACGGAGCAAGAACACGACAAGTTTCTTGAAGCTCT 3221 Query 269 TCACTTATTCGATAGGGATTGGAAGAAAATAGAAGCCTTTGTTGGATCAAAAACAGTAG- 327 ||| ||||| || |||||||||||||||| || ||||| ||||||||||||||||| | Sbjct 3222 TCATTTATTTGACCGGGATTGGAAGAAAATCGAGGCCTTCGTTGGATCAAAAACAGT-GA 3280 Query 328 TTCAGATACGAAGCCACGCTCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGTG-CTAAC 386 | |||||||| |||||||| |||||||||||||||||||||||||||| ||| | |||| Sbjct 3281 TACAGATACGTAGCCACGCACAGAAATACTTTCTCAAAGTTCAGAAGAATGG-GACTAAA 3339 Query 387 GAACAT 392 |||||| Sbjct 3340 GAACAT 3345 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53364433245 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5