BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01310.1
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490441 jgi|Araly1|490441|fgenesh2_kg.6__3575__AT4G01310.1 1356 0.0
> Ahg490441 jgi|Araly1|490441|fgenesh2_kg.6__3575__AT4G01310.1
Length=890
Score = 1356 bits (734), Expect = 0.0
Identities = 840/890 (94%), Gaps = 11/890 (1%)
Strand=Plus/Plus
Query 19 GAACGCCGAGAG--CTCTCAC-T-T-C-AC-ACTTTATCCAC-TTGGAGCTTCGACAATG 70
|||||||||||| ||||||| | | | | ||||||||||| |||||||||||||||||
Sbjct 1 GAACGCCGAGAGCTCTCTCACTTCTCCTGCAACTTTATCCACTTTGGAGCTTCGACAATG 60
Query 71 GCGTCTCCTTCGCTTCTGCAGTCTTCCGCTTCTTCGTTTCACGGACGTTTCTCACCATTA 130
|||||||||||||||||||||||||| |||||||| |||||||||||||| || || |||
Sbjct 61 GCGTCTCCTTCGCTTCTGCAGTCTTCTGCTTCTTCATTTCACGGACGTTTTTCTCCTTTA 120
Query 131 GCGGCTCCATCCTCCGCACGAATGCTCTCTCCGCCGCTCAGAAACGTGGTGAAAGTCTCG 190
|||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 121 GCGGCTCCATCCTCCGCACGGATGCTATCTCCGCCGCTCAGAAACTTGGTGAAAGTCTCG 180
Query 191 GCGTCTGGAACTGTACTGGTCGAGAAATCTGAAGCCGAGAAAACTCAACGCCTCAAAACC 250
|| |||||||| || ||||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 181 GCCTCTGGAACAGTGCTGGTTGAGAAATCTGAGGCCGAGAAAACTCAGCGGCTCAAAACC 240
Query 251 GCTTACCTCGAGAGGATTATCCCTGCGCTCAAAGAAGAGTTCAAGTACGTTAATATTCAC 310
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GCTTACCTGGAGAGGATTATCCCTGCGCTCAAAGATGAGTTCAAGTACGTTAATATTCAC 300
Query 311 CAGGTTCCAAAGGTACAGAAGATTGTAGTGAATTGTGGTATTGGAGATGCGGCGCAGAAC 370
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 CAGGTTCCAAAGGTACAGAAGATTGTAGTGAATTGTGGTATTGGAGATGCAGCGCAGAAT 360
Query 371 GACAAGGGTTTGGAGGCTGCGATGAAGGATATCGCGCTTATCACAGGGCAGAAACCTATT 430
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GACAAGGGTTTGGAGGCTGCAATGAAGGATATCGCGCTTATTACAGGGCAGAAACCTATT 420
Query 431 AAGACACGAGCTAGAGCTTCCATTGCTACTTTCAAGATCAGGGAAGATCAACCTCTTGGG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGACACGAGCTAGAGCTTCCATTGCTACTTTCAAGATCAGGGAAGATCAACCTCTTGGG 480
Query 491 ATTGCTGTCACTCTCAGAGGAGATGTAATGTACTCCTTCTTGGATCGTCTTATCAACTTA 550
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTGCTGTCACTCTCAGAGGAGACGTAATGTACTCCTTCTTGGATCGTCTTATCAACTTA 540
Query 551 GCCCTTCCGAGAACTCGAGATTTCCAAGGTGTGAGTCCCAGTAGCTTTGATGGGAACGGA 610
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 541 GCGCTTCCGAGAACTCGAGATTTCCAAGGCGTGAGCCCCAGTAGCTTTGATGGGAATGGA 600
Query 611 AACTACAGTATTGGTGTGAAAGACCAAGGTGTATTCCCTGAAATCAGGTTTGATGCCGTT 670
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 601 AACTACAGTATTGGTGTGAAAGACCAAGGTGTATTCCCTGAGATCAGGTTTGATGCTGTT 660
Query 671 GGAAAAACGAGAGGAATGGATGTATGCATCAGCACAACGGCTAAAAGCGATCAAGAAGGA 730
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 661 GGAAAAACGAGAGGAATGGATGTATGCATCAGCACAACGGCAAAAACCGATCAAGAAGGG 720
Query 731 CAGAAACTATTGGCTCTAATGGGAATGCCTTTCAGGGAAGGAGGTGGTGGCAGCACAGGC 790
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 CAGAAACTATTGGCTCTAATGGGAATGCCTTTCAGGGAAGGAGGTGGTGGCAACACAGGC 780
Query 791 GCGATAGTGCGGAAGAAGAAACTAAAGTCTCATCACTTTGATGCTAAAGGAAAAGGAAAG 850
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 GCAATAGTGCGGAAGAAGAAACTAAAGTCTCATCATTTTGATGCTAAAGGAAAAGGAAAG 840
Query 851 AGAT-GA--TGAACATAGCTGCCTATTGTATGTATCGTCTTCTGTAACCA 897
| | || |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 841 ACAAAGAGATGAACATAGCTGCCTATTATATGTATTGTCTTCTGTAACCA 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5