BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01320.1
Length=1643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943614 jgi|Araly1|943614|scaffold_604158.1 2257 0.0
> Ahg943614 jgi|Araly1|943614|scaffold_604158.1
Length=1325
Score = 2257 bits (1222), Expect = 0.0
Identities = 1281/1310 (98%), Gaps = 1/1310 (0%)
Strand=Plus/Plus
Query 81 TCGCGGTTC-AGGTCACTCTTTTCTCAGCCATGGCGATTCCTTTCATGGAAACCGTCGTG 139
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGCGGCTCAAGGTCACTCTTTTCTCAGCCATGGCGATTCCTTTCATGGAAACCGTCGTG 60
Query 140 GGTTTTATGATAGTGATGTACATTTTTGAGACGTATTTGGATCTGAGGCAACTCACTGCT 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTTTTATGATAGTGATGTACATTTTTGAGACGTATTTGGATCTGAGGCAACTCACTGCT 120
Query 200 CTCAAGCTTCCAACTCTCCCGAAAACCTTGGTTGGTGTAATTAGCCAAGAGAAGTTTGAG 259
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 CTCAAGCTTCCAACTCTTCCGAAAACCTTGGTTGGAGTTATTAGCCAAGAGAAGTTTGAG 180
Query 260 AAATCACGAGCATACAGTCTTGACAAAAGCTATTTTCACTTTGTTCATGAGTTTGTAACT 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 AAATCACGAGCATACAGTCTTGACAAAAGCTATTTTCACTTTGTTCATGAGTTTGTGACT 240
Query 320 ATACTTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAGATGTCT 379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATACTTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAGATATCT 300
Query 380 GGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATACTGCATACTCTTTCA 439
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 301 GGAGCTGTTCTACCGAGGTTGGGCCTCGATCCAGAGAATGAAATTCTGCATACTCTTTCA 360
Query 440 TTCTTGGCTGGTGTTATGACATGGTCACAGATCACTGATTTGCCATTTTCTTTGTACTCA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTGGCTGGTGTTATGACATGGTCACAGATCACTGATTTGCCATTTTCTTTGTACTCA 420
Query 500 ACTTTCGTGATCGAGTCTCGGCATGGGTTCAACAAACAAACAATATGGATGTTCATTAGG 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTTCGTGATCGAGTCTCGGCATGGGTTCAACAAACAAACAATATGGATGTTCATTAGG 480
Query 560 GACATGATCAAAGGAACATTCCTCTCTGTCATACTAGGCCCACCCATTGTTGCTGCGATA 619
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 481 GACATGATCAAAGGAACATTTCTCTCTGTCATACTTGGCCCACCCATTGTTGCCGCGATC 540
Query 620 ATTTTCATAGTCCAGAAAGGAGGTCCTTATCTTGCCATCTATCTGTGGGCATTCATGTTT 679
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTTTTATAGTCCAGAAAGGAGGTCCTTATCTTGCCATCTATCTGTGGGCATTCATGTTT 600
Query 680 ATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCAACAAG 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCAACAAG 660
Query 740 TTCACTCCTCTTCCAGATGGAGACCTCCGGGAGAAGATTGAGAAACTTGCTTCTTCTCTA 799
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 TTCACTCCTCTTCCAGATGGAGACCTCCGGGAGAAAATTGAGAAACTTGCTTCTTCTCTA 720
Query 800 AAGTTTCCTTTGAAGAAGCTGTTTGTTGTCGATGGATCTACAAGGTCAAGCCATAGCAAT 859
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGTTTCCTCTGAAGAAGCTGTTTGTTGTCGATGGATCTACAAGGTCAAGCCATAGCAAT 780
Query 860 GCTTACATGTATGGTTTCTTTAAGAACAAAAGGATTGTTCTTTATGATACGTTGATTCAG 919
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GCTTACATGTATGGTTTCTTCAAGAACAAAAGGATTGTTCTTTATGATACATTGATTCAG 840
Query 920 CAGTGCAAGAATGAGGATGAAATTGTGGCGGTTATTGCACACGAGCTTGGACATTGGAAA 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAGTGCAAGAATGAGGATGAAATTGTGGCGGTTATTGCACACGAGCTTGGACATTGGAAA 900
Query 980 CTGAATCACACTACATACTCGTTCATTGCAGTTCAAATCCTTGCCTTCTTACAATTTGGA 1039
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 CTGAATCACACTACATACTCGTTCATTGCAGTTCAAATCCTTGCCTTCTTGCAATTTGGA 960
Query 1040 GGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTCGGATTTGATACACAG 1099
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 GGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTTGGATTTGATACACAG 1020
Query 1100 CCTGTTCTCATTGGTTTGATCATATTTCAGCACACTGTAATACCACTGCAACATCTAGTA 1159
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 CCTGTTCTCATCGGTTTGATCATATTTCAGCACACTGTAATACCACTACAACATCTAGTA 1080
Query 1160 AGCTTTGGCCTGAACCTCGTTAGTCGAGCGTTTGAGTTTCAGGCTGATGCTTTTGCTGTG 1219
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1081 AGCTTTGGCCTCAACCTTGTTAGTCGAGCCTTTGAGTTTCAGGCTGATGCTTTTGCTGTG 1140
Query 1220 AAGCTTGGCTATGCAAAAGATCTTCGTCCTGCTCTAGTGAAACTACAGGAAGAGAACTTA 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAGCTTGGCTATGCAAAAGATCTTCGTCCTGCTCTAGTGAAACTACAGGAAGAGAACTTG 1200
Query 1280 TCAGCAATGAACACTGATCCATTGTACTCAGCTTATCACTACTCACATCCTCCTCTTGTT 1339
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1201 TCAGCAATGAACACTGATCCATTGTACTCAGCTTATCACTACTCGCATCCTCCTCTTGTT 1260
Query 1340 GAAAGGCTTCGAGCCATTGATGGAGAAGACAAGAAGACAGATTAAGTCCG 1389
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1261 GAAAGGCTTCGAGCCATTGATGGAGAAGACAAGAAAACAGATTAAGTCCG 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61591926165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5