BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01330.2
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895886 jgi|Araly1|895886|Al_scaffold_0006_3882 2302 0.0
Ahg887356 jgi|Araly1|887356|Al_scaffold_0823_1 739 0.0
Ahg359733 jgi|Araly1|359733|fgenesh1_pg.C_scaffold_823000002 353 2e-96
> Ahg895886 jgi|Araly1|895886|Al_scaffold_0006_3882
Length=1446
Score = 2302 bits (1246), Expect = 0.0
Identities = 1384/1450 (95%), Gaps = 11/1450 (1%)
Strand=Plus/Plus
Query 375 ATGACGATGTCTATATTCAATCCTGATTCAATCAACAACGAGCTATCGAAACCAACATCG 434
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATGACGATGTCTATATTCAATCCTGATTCCATCAATAACGAGCTATCGAAACCAACATCG 60
Query 435 ATCTTTGGTCTAAAGCTTTGGGTCGTCATCGGAATTTTACTAGGATCTCTTATAGTCATC 494
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTTTGGTCTCAAGCTTTGGGTCGTCATCGGAATTTTACTAGGATCTCTTATAGTCATC 120
Query 495 GCTCTCTTCTTTCTCTCCCTCTGTTTAACCTCTCGCCGGAGAAACCGTAAGCCACGTCAC 554
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GCTCTCTTCTTTCTCTCCCTTTGTTTAACCTCTCGCCGGAGAAACCGTAAGCCGCGTCAC 180
Query 555 GCCGATTTCGCATCCGCAGCCGTAGCAACGCCGCCGATTTCAAAGGAGATTCAGGAGATC 614
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCGATTTCGCATCCGCCGCAGTAGCAACGCCGCCGATTTCAAAGGAGATTCAGGAGATC 240
Query 615 GTTAGACCTCCTGCGCAAGACCATTGCCATCCGACGCAGCCCGTTGCGGCGGAGATTCAA 674
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 241 GTTAGACCTCCGGCGCAAGACCATTACCATCCGACGCAGCCCGTTGCGGCGGAGATCCAA 300
Query 675 GTGGATATAGGGAAGACCGAGCACCGTGTTGTGTTCTCGGATCGAGTCTCGAGTGGTGAA 734
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GTCGATATAGGGAAGATCGAGCACCGTGTTGTGTTCTCCGATCGAGTCTCGAGTGGTGAA 360
Query 735 AGCAGAGGAAC---G-GT--TAGTGAAACGGCGTCGTATTCAGGGAGTGGTTGTGTTGGA 788
||||||||||| | || |||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AGCAGAGGAACAGTGAGTGCTAGTGAAACGGCGTCGTATTCAGGTAGTGGTTGTGTTGGA 420
Query 789 CCTGAGGTTTCGCATCTTGGTTGGGGAAGATGGTATACTCTTAGAGAGCTTGAAGCAGCT 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 CCTGAGGTTTCGCATCTTGGTTGGGGAAGATGGTATACTCTTAGAGAGCTTGAAGCGGCC 480
Query 849 ACTAATGGATTGTGTGAAGAGAATGTGATCGGAGAAGGAGGTTATGGGATTGTTTATAGT 908
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGAATGGATTGTGTGAAGAGAATGTGATCGGAGAAGGAGGTTATGGGATTGTTTATAGT 540
Query 909 GGGATTTTAACTGATGGAACTAAAGTCGCTGTCAAGAATCTGCTTAACAACAGGGGTCAA 968
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 GGGATTTTAACTGATGGAACTAAAGTCGCTGTCAAGAATCTGCTTAACAATAGGGGTCAA 600
Query 969 GCTGAGAAGGAGTTTAGAGTGGAAGTGGAAGCTATCGGGCGTGTAAGGCATAAGAATCTC 1028
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCGGAGAAGGAGTTTAGAGTGGAAGTGGAAGCTATCGGGCGTGTAAGGCATAAGAATCTC 660
Query 1029 GTTAGGCTATTAGGATACTGCGTCGAAGGAGCATACAGGATGCTCGTGTATGACTACGTC 1088
|||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 661 GTTAGGCTTTTAGGGTACTGCGTCGAAGGTGCATACAGGATGCTTGTGTATGACTACGTC 720
Query 1089 GATAATGGCAACTTGGAGCAATGGATTCATGGGGATGTTGGTGATAAAAGTCCGT-TGAC 1147
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||
Sbjct 721 GATAATGGCAACTTGGAGCAATGGATTCATGGTGATGTTGGTGACAAAAGTCC-TCTGAC 779
Query 1148 TTGGGATATTCGTATGAACATAATACTTTGCATGGCGAAAGGATTGGCCTATCTGCATGA 1207
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 780 TTGGGATATTCGTATGAACATAATACTTTGCATGGCGAAAGGCTTGGCGTATCTACATGA 839
Query 1208 GGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCG 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGGTCTTGAACCGAAAGTCGTTCATCGGGACATAAAATCTAGTAATATTTTGCTTGATCG 899
Query 1268 TCAATGGAATGCTAAGGTATCAGATTTTGGACTTGCTAAGCTCTTGTTCTCCGAGAGCAG 1327
||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct 900 TCAATGGAATGCTAAAGTATCAGATTTCGGACTCGCTAAGCTGTTGTTCTCTGAGAGCAG 959
Query 1328 CTACGTGACAACCCGAGTAATGGGAACTTTTGGATATGTTGCGCCTGAGTATGCTTGCAC 1387
|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 960 TTACGTGACAACCCGTGTAATGGGGACTTTTGGATATGTTGCACCTGAGTATGCTTGCAC 1019
Query 1388 CGGAATGTTGACAGAAAAGAGTGATATCTATAGTTTTGGGATATTAATCATGGAGATAAT 1447
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 GGGAATGCTGACAGAAAAGAGTGATATCTATAGTTTTGGGATATTAATCATGGAGATTAT 1079
Query 1448 CACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGGTGAATTTGGTTGAGTG 1507
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1080 AACCGGAAGAAACCCTGTCGATTATAGTAGACCTCAAGGAGAGGTGAATTTGGTTGAGTG 1139
Query 1508 GCTGAAAACAATGGTTGGAAACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGA 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GCTGAAAACAATGGTTGGAAACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGA 1199
Query 1568 ACCGCCCACTTCAAAAGCTCTTAAACGCGTGTTGCTCGTCGCGCTGCGTTGTGTGGATCC 1627
||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1200 ACCACCAACTTCAAAAGCTCTTAAACGTGTGTTGCTCGTCGCGCTGCGGTGTGTGGATCC 1259
Query 1628 GGACGCGAATAAGAGACCTAAAATGGGTCATATTATACACATGCTTGAAGCTGAAGACTT 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 GGACGCGAATAAGAGACCTAAAATGGGTCATATTATACACATGCTTGAAGCTGAAGATTT 1319
Query 1688 GTTCTATCGTGACCAGGAACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCA 1747
||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1320 GTTCTATCGTGAC--G-AACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTATAACCA 1376
Query 1748 GCCACGGACTGAAATTTCACCGGCTGTGGCTGAGACGAGCGAAAGTGACAGTTCAAAAGA 1807
||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1377 GCCACAGACTGAAGTTTCTGCGGCTGCAGCTGAGACGAGCGAAAGTGACAGTTCAAAAGA 1436
Query 1808 CCGAAGATAA 1817
||||||||||
Sbjct 1437 CCGAAGATAA 1446
> Ahg887356 jgi|Araly1|887356|Al_scaffold_0823_1
Length=468
Score = 739 bits (400), Expect = 0.0
Identities = 448/471 (95%), Gaps = 3/471 (1%)
Strand=Plus/Plus
Query 1347 ATGGGAACTTTTGGATATGTTGCGCCTGAGTATGCTTGCACCGGAATGTTGACAGAAAAG 1406
||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 1 ATGGGGACTTTTGGATATGTTGCACCTGAGTATGCTTGCACGGGAATGCTGACAGAAAAG 60
Query 1407 AGTGATATCTATAGTTTTGGGATATTAATCATGGAGATAATCACCGGAAGAAATCCTGTC 1466
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 61 AGTGATATCTATAGTTTTGGGATATTAATCATGGAGATTATAACCGGAAGAAACCCTGTC 120
Query 1467 GATTATAGTCGACCTCAAGGAGAGGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGA 1526
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTATAGTAGACCTCAAGGAGAGGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGA 180
Query 1527 AACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGAACCGCCCACTTCAAAAGCT 1586
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 181 AACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGAACCACCAACTTCAAAAGCT 240
Query 1587 CTTAAACGCGTGTTGCTCGTCGCGCTGCGTTGTGTGGATCCGGACGCGAATAAGAGACCT 1646
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CTTAAACGTGTGTTGCTCGTCGCGCTGCGGTGTGTGGATCCGGACGCGAATAAGAGACCT 300
Query 1647 AAAATGGGTCATATTATACACATGCTTGAAGCTGAAGACTTGTTCTATCGTGACCAGGAA 1706
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 301 AAAATGGGTCATATTATACACATGCTTGAAGCTGAAGATTTGTTCTATCGTGAC--G-AA 357
Query 1707 CGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCAGCCACGGACTGAAATTTCA 1766
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 358 CGACGAGCCACGAGGGAGCATGCAAGCCGCGATTATAACCAGCCACAGACTGAAGTTTCT 417
Query 1767 CCGGCTGTGGCTGAGACGAGCGAAAGTGACAGTTCAAAAGACCGAAGATAA 1817
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCGGCTGCAGCTGAGACGAGCGAAAGTGACAGTTCAAAAGACCGAAGATAA 468
> Ahg359733 jgi|Araly1|359733|fgenesh1_pg.C_scaffold_823000002
Length=423
Score = 353 bits (191), Expect = 2e-96
Identities = 205/212 (97%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 750 AGTGAAACGGCGTCGTATTCAGGGAGTGGTTGTGTTGGACCTGAGGTTTCGCATCTTGGT 809
||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 184 AGTGAAACGACGTCGTATTCAGGTAGTGGTTATGTTGGACCTGAGGTTTCGCATCTTGGT 243
Query 810 TGGGGAAGATGGTATACTCTTAGAGAGCTTGAAGCAGCTACTAATGGATTGTGTGAAGAG 869
||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||
Sbjct 244 TGGGGAAGATGGTATACTCTTAGAGAGCTCGAAGCGGCCACGAATGGATTGTGTGAAGAG 303
Query 870 AATGTGATCGGAGAAGGAGGTTATGGGATTGTTTATAGTGGGATTTTAACTGATGGAACT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AATGTGATCGGAGAAGGAGGTTATGGGATTGTTTATAGTGGGATTTTAACTGATGGAACT 363
Query 930 AAAGTCGCTGTCAAGAATCTGCTTAACAACAG 961
||||||||||||||||||||||||||||||||
Sbjct 364 AAAGTCGCTGTCAAGAATCTGCTTAACAACAG 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74656880200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5