BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01400.1
Length=3467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490436 jgi|Araly1|490436|fgenesh2_kg.6__3570__AT4G01400.1 3517 0.0
> Ahg490436 jgi|Araly1|490436|fgenesh2_kg.6__3570__AT4G01400.1
Length=3518
Score = 3517 bits (1904), Expect = 0.0
Identities = 2128/2236 (95%), Gaps = 15/2236 (1%)
Strand=Plus/Plus
Query 1139 AAAAT-aaaaaaaTGCCGGAGATTGAACAAGACGATGCAGCGGCGGAGACGGTGGATTCC 1197
||||| | ||||||||||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 1290 AAAATCATAAAAATGCCGGAGCTTGAACAAGACGTTGCGGCGGCGGAGACGGTGGATTCC 1349
Query 1198 TCCACCGTTAAATTCGGTACACCGGAAGCACTGGAGTATGTACGGTCGCTCACGGACGTT 1257
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1350 TCCACCGTGAAATTTGGTACACCGGAAGCACTTGAGTATGTACGCTCGCTCACGGACGTT 1409
Query 1258 GGCGCAATGACACGTCTTCTTCACGAATGTATCGCTTACCAGCGAAGCTTAGACTCAGAT 1317
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1410 GGCGCGATGACGCGTCTTCTTCACGAATGTATTGCTTACCAGCGAAGCTTAGACTCAGAT 1469
Query 1318 CTCGACACGCTTCTATCGCAGCGGACGGAGCTTGATCGGAATCTCGTTCAGCTTCAGAGA 1377
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 CTCGACACGCTTCTATCTCAGCGGACGGAGCTTGATCGGAATCTCGTTCAGCTTCAGAGA 1529
Query 1378 TCGGCGGAGATTCTCGATATCGTGAAAGCAGATGCAGATCACATGCTCGGAAATGTTCGA 1437
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1530 TCCGCCGAGATTCTCGATATCGTGAAAGCAGACGCAGATCACATGCTCGGAAATGTTCGA 1589
Query 1438 TCGACTTGTGATCTCGCGGATCAAGTCAGTGGCAAGGTACGAGAGCTCGATCTTGCTCAA 1497
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1590 TCGACTTGTGATCTCGCGGATCAGGTCAGTGGCAAGGTACGAGAACTCGATCTTGCTCAA 1649
Query 1498 TCTCGTGTTAATGTTACTCTCTCCCGCATTGACGCGATTGTTGAGCGAGGGAATTGCATC 1557
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1650 TCTCGTGTTAATGTTACTCTCTCCCGCATTGACGCAATTGTCGAGCGAGGGAATTGCATC 1709
Query 1558 GAAGGCGTGAAGACTGCTTTGGAATCCGAGGATTACGAATCTGCTGCGAAATTTGTACAG 1617
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1710 GAAGGCGTGAAAACTGCTTTGGAATCGGAGGATTATGAATCTGCTGCGAAATTTGTACAG 1769
Query 1618 AGATTTCTCCAGATTGATTTGCAGTACAAGGATTCTGGTTCCGATCAGAGCGAACAGCTT 1677
|||||||||||||| |||| ||||||||||||||||||||| || ||||| |||||||||
Sbjct 1770 AGATTTCTCCAGATCGATTCGCAGTACAAGGATTCTGGTTCTGACCAGAGAGAACAGCTT 1829
Query 1678 CACGCGTCGAAGGAGCAGCTTGAAGGTATTGCGAAGAAGAAGCTCTTGGCAGCAATAGAC 1737
| |||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1830 CTCGCGTCGAAGAAGCAGCTTGAAGGTATTGCGAAGAAGAAGCTCTTAGCGGCAATAGAC 1889
Query 1738 CAGAGAGATCATCCTACAATTTTGAGATTCGTGAGACTGTATTCCCCACTGGGAATGGA- 1796
||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1890 CAGAGGGATCATCCTACAATTTTGAGATTCGTGAGACTGTATTCTCCATTGGGAATGGAG 1949
Query 1797 GACAGAAGGTCTACAGCTTTACGTTGGTTACTTGAAAAAGGTCATTGCGTTGAGAGGAAG 1856
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1950 GA-AGAAGGTCTACAGCTTTACGTTGGTTACTTGAAAAAGGTCATTGCGATGAGAGGAAG 2008
Query 1857 GATGGAATATGAAAATGTTGTTGAGCTCATGGAGCAAGGACTCGGACAGGTTAATTTCGT 1916
|||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 2009 GATGGAATATGAAAATGTGGTTGAGCTTATGGAGCAAGGACTCGGACAGGCTAATTTCGT 2068
Query 1917 TGGGTGCTTAACCAATTTGTTTAAGGATATTGTCATGGCTATTGAAGAAAACGATGAGAT 1976
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2069 TGGGTGCTTAGCCAATTTGTTTAAGGATATTGTCATGGCTATTGTAGAAAACGATGAGAT 2128
Query 1977 CTTGAGGGGTCTTTGTGGAGAAGATGGTGTTGCGTATGCGATTTGTGAATTGCAAGAGGA 2036
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2129 CTTGAGGGGTCTTTGTGGAGAAGACGGTGTTGTTTATGCGATTTGTGAATTGCAAGAGGA 2188
Query 2037 ATGTGATT-TAAGAGGTTCGTTGATCTTGAAGAAGTACATGGACTTTAGAAAGTTAGCTA 2095
|||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2189 ATGTGATTCT-AGAGGTTCGTTGATCTTGAAGAAGTACATGGAGTTTAGAAAGTTAGCTA 2247
Query 2096 TATTGGCGTCTGATATTAACAATTCTCCCAATCTGAATATTCTTCCCGGTGGTGCGTCTG 2155
||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||| |||
Sbjct 2248 GATTGGCGTCTGATATTAACAATTCTCCGAATCTGAATCTTCTTGCTGGTGGTGCGCCTG 2307
Query 2156 AAGGACCAGACCCGAGAGAAGTTGAGCTGTATGTGGAAGAGATACTGTCACTGATGCAG- 2214
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 AAGGACCAGACCCGAGAGAAGTTGAGCTGTATGTGGAAGAGATACTGTCACTGATGCAGA 2367
Query 2215 TTGGGTGAGGACTATACCGAGTTCATGGTGTCAAAAATCAAGTCTTTGACGTCGGTAGAT 2274
|| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2368 TT-GGTGAGGATTATACCGAGTTCGTGGTGTCAAAAATCAAGTCTTTGACGTCGGTAGAT 2426
Query 2275 CCTGAATTGTTGCCAACGGCTACAAAGGCATTTAGAAATAAG-AGTTTTAGCAAAGCGAT 2333
|||||||||||||||| |||||||||||||||||||||| | |||||| |||||| |||
Sbjct 2427 CCTGAATTGTTGCCAAGGGCTACAAAGGCATTTAGAAAT-GGAAGTTTTTGCAAAGTGAT 2485
Query 2334 TCAGGATGTGACGA-GATAT-TATGTTATACTAGAAGGGTTCTTTATGGTTGAGAATGTG 2391
|||||||||||| | ||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 2486 TCAGGATGTGAC-AGGAT-TCTATGTGATACTAGAAGGGTTCTTTATGGTTGAGAATGTG 2543
Query 2392 AGGAAAGCTATTAGGATCGATGAGCATGTACCTGACAGCCTTACCACTTCAATGGTGGAC 2451
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2544 AGGAAAGCTATAAGGATTGATGAGCATGTACCTGACAGCCTTACCACTTCAATGGTGGAC 2603
Query 2452 GATGTGTTCTACGTGTTGCAGAGTTGTCTGAGGAGAGCGATTTCAACTTCAAACATAAGT 2511
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2604 GATGTGTTCTACGTGTTGCAGAGTTGTCTGAGGAGAGCGATTTCAACTTCAAACATCAGT 2663
Query 2512 TCTGTGATTGCTGTGTTGAGCTATGCTGGTAGCTTGTTGGGCAATGATTACCATGAAGCT 2571
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2664 TCTGTGATTGCTGTGTTGAGCAATGCTGGTAGCTTGTTGGGCAATGATTACCATGAAGCT 2723
Query 2572 CTACAACAGAAGATTAGAGAGCCTAACCTTGGTGCTAGGTTGTTCTTGGGTGGTATAGGT 2631
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2724 CTACAACAGAAGATTAGAGAGCCAAACCTTGGTGCTAGGTTGTTCTTGGGTGGTATCGGT 2783
Query 2632 GTGGAAAACACCGGAACTGAGATTGCAACTGCTTTGAACAATATGGACGTGAGCTGCGAG 2691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2784 GTGGAAAACACCGGAACTGAGATTGCAACTGCTTTGAACAATATGGACGTGAGCTGCGAG 2843
Query 2692 TACATTCTCAAACTAAAACAT-GAAATCGAGGAGCAATGTACTGAGGTATTTCCTGCACC 2750
|||||| ||||||||||| || |||||||||||||||||||||||| | |||||||||||
Sbjct 2844 TACATTATCAAACTAAAA-ATTGAAATCGAGGAGCAATGTACTGAGATGTTTCCTGCACC 2902
Query 2751 AGCAGATCGAGAGAGGATAAAATCATGTCTATCCGAGCTAGGCGAGTTAAGCAGCACGTT 2810
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2903 AGCAGATCGAGAGAGGATAAAATCATGTCTATCCGAGTTAGGCGAGTTAAGCAACACGTT 2962
Query 2811 CAAGCAGTTACTCAACTCAGGCATGGAACAGCTAGTAGCAACCGTAACACCAAGAATCCG 2870
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2963 CAAGCAATTACTCAACTCAGGCATGGAACAGCTAGTGGCAACCGTAACACCAAGAATCCG 3022
Query 2871 TCCGGTTCTAGACACCGTGGCTACCATAAGCTACGAGTTAACAGAAACCGAGTACGCAGA 2930
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 3023 TCCGGTTCTAGACACTGTAGCTACCATAAGCTACGAGTTAACAGAAACTGAGTACGCAGA 3082
Query 2931 GAATGAGGTGAACGACCCTTGGGTCCAAAGACTTCTCCACTCAGTCGAAACAAATGCCGC 2990
||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 3083 GAACGAGGTGAATGACCCGTGGGTCCAAAGACTGCTCCACTCGGTCGAAACAAATGCCGC 3142
Query 2991 GTGGCTCCAACCACTAATGACATCCAACAACTACGACTCGTTTCTGCATCTCATAATTGA 3050
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3143 ATGGCTCCAACCACTCATGACATCCAACAACTACGACTCGTTTCTGCATCTCATAATCGA 3202
Query 3051 TTTCATAGTTAAGAGACTCGAAGTCATAATGATGCAGAAACGGTTTAGCCAGCTTGGTGG 3110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3203 TTTCATAGTTAAGAGACTCGAAGTCATAATGATGCAGAAACGGTTTAGCCAGCTTGGCGG 3262
Query 3111 GCTTCAGCTTGATCGAGACACAAGGGCTTTGGTTAGCCATTTCTCGGGTATGACTCAAAG 3170
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 3263 GCTTCAGCTTGACCGAGACACAAGGGCGTTGGTTAGCCATTTCTCGGGAATGACTCAAAG 3322
Query 3171 AACAGTGAGAGATAAGTTTGCTCGGTTAACGCAGATGGCGACGATACTGAACTTGGAAAA 3230
|||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 3323 AACAGTGAGAGATAAGTTTGCTCGGTTAACTCAAATGGCGACGATATTGAACTTGGAAAA 3382
Query 3231 GGTCTCAGAGATTTTGGACTTTTGGGGAGAAAACTCAGGACCCATGACTTGGAGACTCAC 3290
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3383 GGTCTCAGAGATTTTGGACTTTTGGGGAGAGAACTCAGGACCCATGACTTGGAGACTCAC 3442
Query 3291 ACCAGCTGAGGTTAGACGGGTTTTGGGTCTCCGGGTCGAGTTCAAACCCGAATCAATTGC 3350
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || |
Sbjct 3443 ACCAGCTGAGGTTAGACGGGTTTTGGGTCTCCGAGTCGAGTTTAAACCCGAATCAGTTTC 3502
Query 3351 TGCTCTCAAGTTGTGA 3366
||||||||||||||||
Sbjct 3503 TGCTCTCAAGTTGTGA 3518
Score = 1075 bits (582), Expect = 0.0
Identities = 750/828 (91%), Gaps = 23/828 (3%)
Strand=Plus/Plus
Query 1 AACGGCCGATTTATTaaaaaaaaaCTCCG-ACAAATGATTCGCCGGCCGATCTACGACTT 59
||||||||||||||| |||| ||||| || |||||||||||||||||||||||||
Sbjct 1 AACGGCCGATTTATT----AAAAGCTCCGAAC-GATGATTCGCCGGCCGATCTACGACTG 55
Query 60 CGCCGCCGTTTTTCGCCACTTAACTT-CTCCGTTATCGACATCCTCGCGTTTTCTGTTCT 118
| |||||| | ||||||| ||| || ||||||||||||||| ||||||||||| |||
Sbjct 56 CTCCGCCGCTGCTCGCCACCTAA-TTACTCCGTTATCGACATTTTCGCGTTTTCT-ATCT 113
Query 119 --ATTCTTCA--TC-TGAACATGAA-G-CTCGAAAACCG-ATTG--TCTCGAACCCTAAA 168
| | | || |||| ||| | |||| | || | || | | |||||||
Sbjct 114 GAACAC-AAAGCTCGAGAAC-CGAAGGCCTCGGCTTTGGTATCGAATC-CTAGCCCTAAA 170
Query 169 TCCCCAATCGGGTCTCCGACTCGGGTTCAAAAGCTCATAGCTTCGCAATCGGATCCTCTC 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCCCCAATCGGGTCTCCGACTCGGGTTCAAAAGCTCATAGCTTCGCAATCGGATCCTCTC 230
Query 229 CTCGCCAAGGAGATTTTCGATTATGCTTCTCAACAGCCCAATTTCCGCCATTCTCGATCT 288
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 231 CTCGCCAAAGAGATTTTCGATTACGCTTCTCAACAGCCCAATTTCCGCCATTCTCAATCT 290
Query 289 TCTCATCTAATCCTCATTCTCAAACTCGGCCGTGGTAGATATTTCAATCTTATCGACGAC 348
|||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 291 TCTCATCTCATCCTCATTCTCAAACTCGGCCGTGCTAGATATTTCAATCTCATCGACGAC 350
Query 349 GTTCTCGCCAAACACAGATCAAGTGGTTATCCATTAACCGGAGAAATTTTCACTTATCTG 408
||||||||||| |||||||||||| ||||||| ||||||||||||| ||||| ||||||
Sbjct 351 GTTCTCGCCAAGCACAGATCAAGTCGTTATCCGGTAACCGGAGAAATATTCACATATCTG 410
Query 409 ATCAAAGTCTACGCAGAAGCAAAGTTACCGGAGAAAGTCTTAAGTACGTTTTACAAAATG 468
||||||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 411 ATCAAAGTCTACGCAGAGGCAAAGATACCGGAGAAAGTTTTAAGAACGTTTTACAAAATG 470
Query 469 CTGGAGTTCAATTTCACGCCGCAGCCAAAACATCTGAATCGGATTCTAGATGTTCTCGTA 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 471 CTGGAGTTCAATTTCACGCCGCAGCCAAAACATCTGAATCGGATTCTAGATGTTCTTGTA 530
Query 529 AGCCATAGAGGTTATCTCCAGAAAGCTTTTGAGCTTTTCAAGAGTTCACGGCTTCATGGA 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 531 AGCCATAGAGGTTATCTCCAGAAAGCTTTTGAGCTTTTCAAGAGTTCACGGCTTCACGGA 590
Query 589 GTAATGCCTAACACGAGAAGTTACAATTTATTGATGCAAGCTTTTTGTTTGAATGATGAT 648
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 591 GTAATGCCTAACACGAGAAGCTACAATATATTGATGCAAGCTTTTTGTTTGAATGATGAT 650
Query 649 TTGAGTATTGCATACCAACTGTTTGGTAAAATGCTTGAGAGAGATGTTGTCCCTGATGTG 708
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTGAGTATTGCATACCAATTGTTTGGTAAAATGCTTGAGAGAGATGTTGTCCCTGATGTG 710
Query 709 GATTCTTATAAGATTCTGATACAAGGGTTTTGTAGGAAAGGTCAAGTGAATGGTGCTATG 768
|| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 711 GAGTCTTATAAGATTCTGATAAAAGGGTTTTGTAGGAAAGGGCAAGTGAATGGTGCTATG 770
Query 769 GAATTACTTGATGATATGTTGAATAAAGGATTCGTGCCTGATAGGACT 816
|||||||| || |||||||||||||||||||| || || ||||| |||
Sbjct 771 GAATTACTGGAAGATATGTTGAATAAAGGATTTGTTCCCGATAG-ACT 817
Score = 481 bits (260), Expect = 2e-134
Identities = 304/326 (93%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 813 GACTTTGATTGGAGGATTGTGTGATCAAGGAATGTTTGATGAAGGGAAGAAGTATCTAGA 872
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 917 GACATTGATTGGAGGATTGTGTGATCAAGGAATGTTTGATGAAGGGAAGAAGTATCTACA 976
Query 873 AGAGATGATATCCAAAGGGTTTTCTCCTCATTTCTCGGTTTCAAATTGTTTGGTAAAAGG 932
|||||||||||| || ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 977 AGAGATGATATCGAAGGGGTTTTCTCCTCATTTCTCGATTTCGAATTGTTTGGTAAAAGG 1036
Query 933 GTTTTGTAGCTTCGGGAAAGTCGAAGAAGCTTGTGATGTTGTAGAGGTTGTGATGAAGAA 992
|||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 1037 GTTTTGCAGCTTCGGGAAAGTCGAAGAAGCGTGTGATGTGGTAGAGTTTGTGATGAAGAA 1096
Query 993 CGGAGAAACATTGCATTCAGACACTTGGGAGATGGTAATTCCATTAATCTGTAATGAAGA 1052
|||||||| ||| ||||||||||| ||||||||| |||||||||| |||||||| |||||
Sbjct 1097 CGGAGAAATATTACATTCAGACACGTGGGAGATGATAATTCCATTGATCTGTAAAGAAGA 1156
Query 1053 TGAGTCGGAGAAGATCAAACTGTTTCTTGAAGATGCTGTAAAGGAAGAAATAACCGGTGA 1112
|||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 1157 TGAGACGGAGAAGATCAAACGGTTTCTTGAAGATGCTTTAAAGGAAGAGATAACCGGTGA 1216
Query 1113 TACCAGAATCGTTGATGTCGGTATCG 1138
||||||||| || |||||||||||||
Sbjct 1217 TACCAGAATTGTCGATGTCGGTATCG 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130918051120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5