BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01450.2
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490431 jgi|Araly1|490431|fgenesh2_kg.6__3565__AT4G01450.1 1589 0.0
> Ahg490431 jgi|Araly1|490431|fgenesh2_kg.6__3565__AT4G01450.1
Length=1261
Score = 1589 bits (860), Expect = 0.0
Identities = 981/1038 (95%), Gaps = 13/1038 (1%)
Strand=Plus/Plus
Query 1 ACTACTCAAACAAGTTTCTGaagaagagacagagagagaaggatagagtaaaagctaaga 60
||||||||||||||||||| |||| | ||||| || | | ||||||||||||||||
Sbjct 3 ACTACTCAAACAAGTTTCT---GAAG-G--AGAGACAGCA-G--AGAGTAAAAGCTAAGA 53
Query 61 gagagagcgagact--gagagagaaagaaagagaTATCATTTTGGTTATTAAGTAATTAA 118
|||||||||||||| |||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 54 GAGAGAGCGAGACTGGGAGAGACAAAGAGAGAGAGATCATTTTGGTTATTAATTAATTAA 113
Query 119 CTTATACTAATCATGGGTTTTATCGATGGAAAGTGGGCACCAATGATAGTCTTAATTGTT 178
|||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||
Sbjct 114 CTTATACTAATCATGGGTTTTATCGATGGAAAGTGGGCGCCGATGATCGTCATAATTGTT 173
Query 179 TCTAACATGATTGCGGGAATGGTTAATGCTTTAG-TTAAGAAAGTTCTTGATGGAGGCAT 237
||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 174 ACTAACATGATTGCCGGAATGGTTAACGCTTT-GATTAAGAAAGTTCTTGATGGAGGCAT 232
Query 238 CAATCATATGGTTATTGCTACTTATCGTTTGGGTATATCTACTCTTTTCCTTCTTCCAGT 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 233 TAATCATATGGTTATTGCTACTTATCGTTTGGGTATTTCTACTCTTTTCCTTCTTCCAAT 292
Query 298 CGCTTATTTTTGGGAACGGAAAACAAGACCAAAGCTAACTCTAAGCATCTCATGTCAGCT 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 293 CGCTTATTTTTGGGAACGGAAAACAAGACCAAAGCTAACCCTAAGCATCTCATGTCAGCT 352
Query 358 TTTCGTCAGTGCCCTTTTTGGGGCGAGCTTGATGCAATATTTCTACTTGCTTGGACTGTC 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 353 TTTCGTCAGTGCCCTTTTTGGGGCGAGCTTGATGCAATATTTCTACCTGCTTGGACTCTC 412
Query 418 CTACACGTCTGCAACGCTGGGATCTGCTTTCTGGGCCATAATGCCTTCCCTCACTTTCGT 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CTACACGTCTGCAACGTTGGGATCTGCTTTCTGGGCCATAATGCCTTCCCTCACTTTCGT 472
Query 478 TATGGCTTTAATATTTGGGTTCGAAAAGCTAAGTTTGAAAACAAAAATAGGATACGGTGT 537
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 473 TATGGCTTTAATATTTGGGTTCGAAAAGTTAACTTTGAAAACAAAAATAGGATACGGCGT 532
Query 538 CGTTCTTGGAACTTTGATAAGCTTAGTAGGAGGTTTACTTCTTACTATGTATCAAGGGAT 597
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 533 CGTTCTTGGAACTTTAATAAGCTTAGTAGGAGGTTTACTTCTTACTATGTATCAAGGCAT 592
Query 598 TCCATTAACAAACTCTCCAGAACAAGCAGCAAATTCAAATAACCACACAGGACATGAGAA 657
||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 593 TCCATTAACAAACTCTCAAGAACAAGCAGAAAATCCAAACAACCACACAGGACATGAGAA 652
Query 658 TTGGATCAAAGGTTGTTTCTTTTTATTGACCGGAGTTGTTCTTTTCAGTTCTTGGATGCT 717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 653 TTGGATCAAAGGTTGTTTCTTTTTATTGACCGGAGTTATTCTTTTCAGTTCTTGGATGCT 712
Query 718 TATACAAGCCAAGATCAACGTGAAATACCCTTGTCCATACTCGAGTACCGTTATTTTGTC 777
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 713 TATACAAGCCAAGATCAACGTGAATTACCCTTGTCCATACTCGAGTACCGTTATTTTGTC 772
Query 778 GGTCTTTGGTACGCTTCAATGCGCCCTTCTTAGTTTAATTAAGACTAGACATTTGGAAGA 837
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 773 GGTCTTTGGTACACTTCAATGCGCCCTTCTTAGTTTAATCAAGACTAGACATTTGGAAGA 832
Query 838 TTGGATCCTTAGAGATGAGCTTACCATCATCACCGTCGTTATAGCGGGAGTGGTTGCACA 897
||||||||| ||||| ||||| ||||||||||||||| ||||||||| ||||||||||||
Sbjct 833 TTGGATCCTCAGAGACGAGCTAACCATCATCACCGTCATTATAGCGGTAGTGGTTGCACA 892
Query 898 AGGTATGTGTACGGTGGGCATGTCGTGGTGTATCAAACAACAAGGACCTGTCGTTTCCTC 957
||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 893 AGGAATGTGTACGGTGGGAATATCATGGTGTATCAAACAACAAGGACCTGTCGTTTCCTC 952
Query 958 ATCATTTAGTCCTGTCGTGCTTATGTCTGCAACCGTGTTCGATTTCTTGATTCTTCATCG 1017
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 953 ATCATTTAGTCCTGTCGTGCTTATGTCTGCAACCTTGTTCGATTTCTTGATTCTTCATCG 1012
Query 1018 TGAGATTTATTTGGGAAG 1035
|| |||||||||||||||
Sbjct 1013 TGTGATTTATTTGGGAAG 1030
Score = 311 bits (168), Expect = 1e-83
Identities = 226/253 (89%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 1075 ATTTCTATGGAGTAGGAGTAAGCAAATAGTAGAGTGTAAGATCATGAAGTTGCCTACCAA 1134
|||| | ||| | |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1017 ATTTATTTGG-GAAGGAGTAAGCAAATAGAAGAGTGTAAGATCATGAAGTTGCCTACTAA 1075
Query 1135 TACGGTGGAAGAAGAAAAGGAAGAGGAAGGCCGTACAAATGTTAACAACGGTCAACTTTT 1194
|||||||||||||||||||||||||||||||||||||||| |||||| || || |||||
Sbjct 1076 TACGGTGGAAGAAGAAAAGGAAGAGGAAGGCCGTACAAATTTTAACATGGGCCAGCTTTT 1135
Query 1195 GGTTATTCCGATGACTCCTTGATCTACTTCCCTAAACACGCTTGTTCAACAAGAATCATG 1254
|||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||
Sbjct 1136 GGTTATACCGATGACTCCTTGATCTACTTCCCTAAACACTCTTGTTCAACGAGAAGGAT- 1194
Query 1255 ACCGATATGTCTTCAAAAAATGAAATATGAAGAAGAGAAGATAACGATCGTTTTCATTGT 1314
| |||||||||||| ||| | ||||||||||||||||| || ||||||||| |||||
Sbjct 1195 -C-GATATGTCTTCAGAAATT-AAATATGAAGAAGAGAAAAT---GATCGTTTTGATTGT 1248
Query 1315 TTATTGGACTATT 1327
|||||||||||||
Sbjct 1249 TTATTGGACTATT 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5