BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01460.1
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327641 jgi|Araly1|327641|fgenesh1_pm.C_scaffold_6002861 1480 0.0
> Ahg327641 jgi|Araly1|327641|fgenesh1_pm.C_scaffold_6002861
Length=948
Score = 1480 bits (801), Expect = 0.0
Identities = 897/944 (95%), Gaps = 4/944 (0%)
Strand=Plus/Plus
Query 232 GGATTGATGAGTTTTGGTGAATTAGAAGACCAATTTGGTCAGATTTCAG-ACACTACTAT 290
||||| ||||| ||||||||| ||| ||| ||||||||||||||||||| || |||| ||
Sbjct 7 GGATTAATGAGATTTGGTGAACTAGGAGAACAATTTGGTCAGATTTCAGAAC-CTACAAT 65
Query 291 GGAAGAGAAGATACCATTTCTGCAAATGCTTCAATGCATAGAACACCCTTTTACAACAAC 350
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 66 TGAAGAGAAGATCCCATTTCTGCAAATGCTTCAATGCATAGAACACCCTTATACAACAAC 125
Query 351 AGAACCAAATCAGTTTCTCCAATCACTTCTCCAGATCCAAACCCTAGAATCAAAGAGCTG 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 126 AGAACCAAATCAGTTTCTCCAATCACTTCTCCAGATCCAAACCCTAGAATCAAATAGCTG 185
Query 411 TCTCACCCTTGAAACAAACATCAAAAGAGATCCGGGTCAAACAGATGACCcggaaaagga 470
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TCTCACCCTTGAAACCACCATCAAAAGAGATCCGGGTCAAACAGATGACCCGGAAAAGGA 245
Query 471 tccaagaacagaaaacggagcagtaacggtcaaagaaaaaagaaaacggaaacgtacaag 530
|||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 246 TCCAAGAACAGAGCCCGGAGCAGCAACGGTCAAAGAAAAGAGAAAACGGAAACGTACAAG 305
Query 531 agctccaaagaacaaagacgaagttgaaaaccaaagGATGACTCACATTGCCGTCGAACG 590
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 306 AGCTCCAAAGAACAAAGATGAAGTTGAAAAACAAAGGATGACTCACATTGCCGTCGAACG 365
Query 591 TAATCGAAGACGACAAATGAACGAACACTTAAACTCTCTCCGATCTCTCATGCCTCCTTC 650
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 366 TAATCGAAGACGACAAATGAACGAACACTTAAACTCTCTCCGATCTCTTATGCCTCCTTC 425
Query 651 GTTTCTTCAACGGGGTGACCAAGCTTCGATTGTAGGAGGGGCAATAGATTTCATCAAGGA 710
|| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 426 GTATATTCAACGGGGTGATCAAGCTTCGATTGTAGGAGGCGCAATAGATTTCATCAAGGA 485
Query 711 ACTAGAGCAACTCTTGCAATCTCTAGAAGCTGAGAAACGAAAGGATGGAACTGATGAAAC 770
||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 486 ACTCGAGCAACTCTTGCAATCTCTAGAAGCTGAGAAACGAAACGATGGAACTAATGAAAC 545
Query 771 TCCTAAAACGGCGTCGTGTTCTTCATCTTCGTCTCTTGCATGCACTAACTCTTCTATTTC 830
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 546 TCCTAAAACGGCGTCGTGTTCTTCATCTTCGTCTCGTGCATGCACTAACTCTTCTGTTTC 605
Query 831 TAGCGTGTCTACGACGTCGGAAAATGGATTTACGGCGAGATTCGGCGGTGGAGATACGAC 890
|||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |
Sbjct 606 TAGCGTCTCTACGACGTCGGAAGATGGATTTACGGCGAGATTCGGCGGCGGAGAGACGGC 665
Query 891 AGAAGTGGAGGCTACGGTGATACAGAACCATGTGAGCTTAAAAGTTCGGTGTAAGAGAGG 950
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GGAAGTGGAAGCTACGGTGATACAGAACCATGTGAGCTTAAAAGTTCGGTGTAAGAGAGG 725
Query 951 AAAACGACAGATCTTAAAAGCTATTGTCTCGATTGAAGAACTAAAGCTTGCGATTCTACA 1010
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 726 AAAAGGACAGATCTTGAAAGCTATCGTCTCGATTGAAGAACTAAAGCTTGCGATTCTACA 785
Query 1011 TCTCACTATCTCTTCTTCCTT-TGACTTTGTCATCTACTCTTTCAATCTCAAGATGGAAG 1069
|||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||
Sbjct 786 TCTCACTATCTCTTCTTC-TTATGACTTTGTCATCTACTCTTTTAATCTCAAGATAGAAG 844
Query 1070 ATGGTTGTAAATTAGGATCAGCAGATGAGATAGCGACAGCCGTTCATCAGATCTTCGAGC 1129
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 845 ATGGTTGTAAATTAGGATCAGCAGATGAGATAGCGACAACCGTTCATCAGATCTTCGAGC 904
Query 1130 AAATCAACGGTGAAGTCATGTGGTCAAATCTTAGTCGAACTTAG 1173
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct 905 AAATCAACGGTGAAGTGATGTGGTCAAATCTTAGTCGAACTTAG 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53135891775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5