BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01540.1
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943589 jgi|Araly1|943589|scaffold_604133.1 1628 0.0
Ahg352687 jgi|Araly1|352687|fgenesh1_pg.C_scaffold_6003280 625 3e-178
Ahg327634 jgi|Araly1|327634|fgenesh1_pm.C_scaffold_6002854 161 1e-38
> Ahg943589 jgi|Araly1|943589|scaffold_604133.1
Length=1486
Score = 1628 bits (881), Expect = 0.0
Identities = 1305/1496 (87%), Gaps = 84/1496 (6%)
Strand=Plus/Plus
Query 140 GATCTGTTTCTGTGT-GAAAAGATGATGAAAGGTCTGATTGGGTATAGATTTAGTCCGAC 198
||||||||||||| | |||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 1 GATCTGTTTCTGTATCAAAAAAATGGTGAAAGATCTGATTGGGTATAGATTTAGTCCGAC 60
Query 199 GGGAGAGGAAGTGATCAACCATTACCTAAAGAACAAACTTCTGGGTA-AGTA--TTGGCT 255
|||||||||| |||| ||||||||||| ||||||||| |||||||| | | || |||
Sbjct 61 GGGAGAGGAATTGATTAACCATTACCTGAAGAACAAAAATCTGGGTACAAAAACTTTGCT 120
Query 256 CGTTGATGAAGCTATTAGCGAGATCAACATCTTGAGTCACAAACCCAGCAAGGATTTGCC 315
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CGTTGATGAAGCCATTAGCGAGATCAACATCTTGAGCCACAAACCCAGCAAGGATTTGCC 180
Query 316 TAAGTTAGCTAGGATCCAATCGGAAGATCTTGAATGGTATTTCTTCTCTCCGATTGAGTA 375
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 181 TAAGTTAGCTAAGATCCAATCGGAAGATCTTGAATGGTACTTCTTCTCTCTGATTGAGTA 240
Query 376 CACGAACCCGAATAAGA-TGAAAATGAAGAGGACGACAGGTTCTGGGTTTTGGAAACCTA 434
|||||||| ||| |||| ||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 241 CACGAACCGGAAGAAGAATGAAA-TGAAGAGGACTACAGGTACTGGGTTTTGGAAACCTA 299
Query 435 CTGGTGTTGATCGGGAAATTAGGGATAAAAGAGGAAATGGTGTTGTGATAGGGATTAAGA 494
|||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 300 CTGGTGTTGATCGGAAAATTAGGGATAAAAGAGGAAATGGTGTTGTGATCGGTTTTAAGA 359
Query 495 AGACGCTTGTGTACCATGAAGGTAAGAGTCCTCATGGAGTTAGAACTCCTTGGGTTATGC 554
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 360 AGACGCTTGTGTACCATGAAGGTAAGGGTCCTAATGGAGTTAGAACTCCTTGGGCTATGC 419
Query 555 ACGAGTATCACATCACTTGCTTGCCTCATCATAAGAGGAAATATGTTGTCTGCCAAGTAA 614
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 420 ACGAGTATCACATCACTTGCTTGCCTCATGATAAGAGGAAATATGTTATCTGCCAAGTAA 479
Query 615 AGTATAAGGGTGAAGCTGCAGAAATTTCATATGAGCCAAGTCCCTCTTTGGTATCCGATT 674
||||||||||| |||||||||| ||||||||||||||||||| ||| | | || || |
Sbjct 480 AGTATAAGGGTAAAGCTGCAGACATTTCATATGAGCCAAGTCGCTCC--GAT-TC-GAAT 535
Query 675 CGCATACCGTCATAGCGATTACCGGAGAACCGGAACCTGAGCTTCAGGTTGAGCAGCCAG 734
| |||| | |||||||| | ||| | || |||||||||||||||||||||||||
Sbjct 536 A-C-TACC---AGAGCGATTAACAGAGCGGCTGAGCCTGAGCTTCAGGTTGAGCAGCCAG 590
Query 735 GTAAAGAAAATCTCTTGGGTATGTCTGTAGATGATTTGATAGAACCA-ATGAACCAACAA 793
||| ||||||| |||||||||||||| ||||||||||| |||| | | || |||| ||
Sbjct 591 GTAGAGAAAATTTCTTGGGTATGTCTTTAGATGATTTG---GAACAAGAGGATCCAAAAA 647
Query 794 GA-G---G-AGCCACAAGGTCCTCACTTAGC-TCCGAATGATGATGAGTTTATACGTGGA 847
| | |||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 648 CTTGCTTGCAGCCACAAGGTCCTCACTTAGCCTT-GAATGATGATGAGTTTATCCGTGGA 706
Query 848 TTGAGGCATGTTGATCGAGGGACG-GTTGAATATTTGTTTGCCAATGAAGAAAACATGGA 906
||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 707 TTGAGGCATGTTGATCGAGA-ACAAGTTGAATATTTGTTCGCCAATGAAGAAAACATTGA 765
Query 907 TGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTCTCTGA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTCTCTGA 825
Query 967 GTGGGAGGGATTTAACGCAGACACCTTTTTCAGCGACAACAACAATAACTATAACCTTAA 1026
|||||| |||||||| |||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 826 GTGGGATGGATTTAATGCAGACACGTTTTTCAGCGACAACAACAATAACAACAACCTTAA 885
Query 1027 CGTGCATCATCAACTAACGCCTTACGGCGATGGCTATTTGAATGCAT-TT-T--CGG-GT 1081
||||||||| | ||||||| |||||| |||| ||| ||||||| || | ||| |
Sbjct 886 CGTGCATCA--A-CTAACGCGTTACGGAGATGATTATCGGAATGCAGGTTATAACGGAGG 942
Query 1082 TA-TAACGAAGG-GAATCC-TCCCGATCACGAATTAGTGATGCAAGAGAACCGCAACGAT 1138
| | ||||| | | | |||| |||| |||||| | |||||||||||||||||||||
Sbjct 943 GAATTTTGAAGGCG--TGCATCCCTATCAAGAATTAATAATGCAAGAGAACCGCAACGAT 1000
Query 1139 CACATGCCAAGGAAACCTGTGACAGGGACCATTGATTATAGCAGCGATAGTGGCAGTGAT 1198
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 CACATGCCAAAGAAACCTTTGACAGGGACCATTGATTATAGCAGCGATAGTGGCAGTGAT 1060
Query 1199 GCTGGATCCATATCTACAACGAGTTACCAAGGAACATCAAGTCCAAATATTAGTGTTGGT 1258
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1061 GCTGGATCGATATCTACAACGAGTTACCAAGGAATATCAAGTCCAAATATTAGTGTTGGT 1120
Query 1259 AGTTCAAGTAGACACTTGTCAAGTTGCTCAAGCACAGACTCTTGCAAAGATCTACAAACT 1318
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AGTTCAAGCAGACGCTTGTCAAGTTGCTCAAGCACAGACTCTTGCAAAGATCTACAAACT 1180
Query 1319 TGTACAGATCCTTCAATAATCAGTAGAGAGATCCGGGAAT-T-AAC--ACA-A--G-AG- 1369
| | ||||||||||||| ||||||||||| |||||||| | ||| ||| | | |
Sbjct 1181 TCTGCAGATCCTTCAAT---CAGTAGAGAGACCCGGGAATATCAACTCACACAACGCACT 1237
Query 1370 GTG--A--AA--CAAGA----AATC--------CCAAGAGCTGTTGATGCACCCATGAAC 1411
|| | || ||||| || | |||||||||||||||||| ||||||||
Sbjct 1238 GTACCATCAAAACAAGAGGTGAAACAAGAGATTCCAAGAGCTGTTGATGCATCCATGAAC 1297
Query 1412 AATGAGTCATCTTTGGTGAAAACAGAGAAGAAAG-GCTTGTTTATTGTAGAGGACGCAAT 1470
|||||||| |||||||||||||||||| |||| | ||||||||||| |||||||||||||
Sbjct 1298 AATGAGTCGTCTTTGGTGAAAACAGAGGAGAA-GTGCTTGTTTATTCTAGAGGACGCAAT 1356
Query 1471 GGAGAGAAACCGCAAGAAACCACGATTTATCTATCTCATGAAGATGATCATAGGCAACAT 1530
||||||||||||||||| |||||| |||||||||||||||| | ||||||| |||
Sbjct 1357 GGAGAGAAACCGCAAGACACCACGGTTTATCTATCTCATGA---T---CATAGGCTTCAT 1410
Query 1531 -CAT---ATCGGTTTTACTACCCGTCAAAAGATTGATCCCGGTGAAGAAGTTATGA 1582
| | |||||||||||||||||||||| |||||| |||| |||||||||| |||
Sbjct 1411 TCGTCGTATCGGTTTTACTACCCGTCAAA-GATTGAACCCGCTGAAGAAGTTTTGA 1465
> Ahg352687 jgi|Araly1|352687|fgenesh1_pg.C_scaffold_6003280
Length=1578
Score = 625 bits (338), Expect = 3e-178
Identities = 536/626 (86%), Gaps = 35/626 (6%)
Strand=Plus/Plus
Query 610 AGTAAAGTATAAGGGTGAAGCTGCAGAAATTTCATATGAGCCAAGTCCCTCTTTGGTATC 669
||||||||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 462 AGTAAAGTATAAGGGTGAAGCTGCAGACATTTCATATGAGCCAAG----TC----G-CTC 512
Query 670 CGATTCGCATACCGTCATAGCGATTACCGGAGAACCGGAACCTGAGCTTCAGGTTGAGCA 729
||||||| |||| || |||||||| | ||| | || ||||||||||||||||||||
Sbjct 513 CGATTCGAATACTACCAGAGCGATTAACAGAGCGGCTGAGCCTGAGCTTCAGGTTGAGCA 572
Query 730 GCCAGGTAAAGAAAATCTCTTGGGTATGTCTGTAGATGATTTGATAGAACCA-ATGAACC 788
|||||||| ||||||| |||||||||||||| ||||||||||| |||| | | || ||
Sbjct 573 GCCAGGTAGAGAAAATTTCTTGGGTATGTCTTTAGATGATTTG---GAACAAGAGGATCC 629
Query 789 AACAA---G--AGGAGCCACAAGGTCCTCACTTAG-CTCCGAATGATGATGAGTTTATAC 842
|| || | | ||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 630 AAAAACTTGCTTGCAGCCACAAGGTCCTCACTTAGCCT-TGAATGATGATGAGTTTATCC 688
Query 843 GTGGATTGAGGCATGTTGATCGAGGGAC-GGTTGAATATTTGTTTGCCAATGAAGAAAAC 901
||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||
Sbjct 689 GTGGATTGAGGCATGTTGATCGA-GAACAAGTTGAATATTTGTTCGCCAATGAAGAAAAC 747
Query 902 ATGGATGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTC 961
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 ATTGATGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTC 807
Query 962 TCTGAGTGGGAGGGATTTAACGCAGACACCTTTTTCAGCGACAACAACAATAACTATAAC 1021
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct 808 TCTGAGTGGGATGGATTTAATGCAGACACGTTTTTCAGCGACAACAACAATAACAACAAC 867
Query 1022 CTTAACGTGCATCATCAACTAACGCCTTACGGCGATGGCTATTTGAATGCAT-TT-T--C 1077
|||||||||||||| | ||||||| |||||| |||| ||| ||||||| || | |
Sbjct 868 CTTAACGTGCATCA--A-CTAACGCGTTACGGAGATGATTATCGGAATGCAGGTTATAAC 924
Query 1078 GG-GTTA-TAACGAAGG-GAATCC-TCCCGATCACGAATTAGTGATGCAAGAGAACCGCA 1133
|| | | | ||||| | | | |||| |||| |||||| | ||||||||||||||||
Sbjct 925 GGAGGGAATTTTGAAGGCG--TGCATCCCTATCAAGAATTAATAATGCAAGAGAACCGCA 982
Query 1134 ACGATCACATGCCAAGGAAACCTGTGACAGGGACCATTGATTATAGCAGCGATAGTGGCA 1193
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 983 ACGATCACATGCCAAAGAAACCTTTGACAGGGACCATTGATTATAGCAGCGATAGTAGCA 1042
Query 1194 GTGATGCTGGATCCATATCTACAACG 1219
||||||||||||| ||||||||||||
Sbjct 1043 GTGATGCTGGATCGATATCTACAACG 1068
> Ahg327634 jgi|Araly1|327634|fgenesh1_pm.C_scaffold_6002854
Length=1236
Score = 161 bits (87), Expect = 1e-38
Identities = 136/159 (86%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 1123 AGAGAACCGCAACGATCACATGCCAAGGAAACCTGTGACAGGGACCA---TTGATTATAG 1179
|||||||||||||||||||| ||||| |||| || || |||||| | ||||||||||
Sbjct 846 AGAGAACCGCAACGATCACAGGCCAAAGAAAGCTTTGTCAGGGATTATTGTTGATTATAG 905
Query 1180 CAGCGATAGTGGCAGTGATGCTGGATCCATATCTACAACGAGTTACCAAGGAACATCAAG 1239
||| |||||| |||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 906 CAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACATCAAG 965
Query 1240 TCCAAAT-AT--TAGTGTTGGTAGTTCAAGTAGACACTT 1275
|||| | || ||||||||||||||||| |||||||||
Sbjct 966 TCCAGGTGATGATAGTGTTGGTAGTTCAAATAGACACTT 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59268421220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5