BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01540.1 Length=1582 Score E Sequences producing significant alignments: (Bits) Value Ahg943589 jgi|Araly1|943589|scaffold_604133.1 1628 0.0 Ahg352687 jgi|Araly1|352687|fgenesh1_pg.C_scaffold_6003280 625 3e-178 Ahg327634 jgi|Araly1|327634|fgenesh1_pm.C_scaffold_6002854 161 1e-38 > Ahg943589 jgi|Araly1|943589|scaffold_604133.1 Length=1486 Score = 1628 bits (881), Expect = 0.0 Identities = 1305/1496 (87%), Gaps = 84/1496 (6%) Strand=Plus/Plus Query 140 GATCTGTTTCTGTGT-GAAAAGATGATGAAAGGTCTGATTGGGTATAGATTTAGTCCGAC 198 ||||||||||||| | |||| ||| |||||| ||||||||||||||||||||||||||| Sbjct 1 GATCTGTTTCTGTATCAAAAAAATGGTGAAAGATCTGATTGGGTATAGATTTAGTCCGAC 60 Query 199 GGGAGAGGAAGTGATCAACCATTACCTAAAGAACAAACTTCTGGGTA-AGTA--TTGGCT 255 |||||||||| |||| ||||||||||| ||||||||| |||||||| | | || ||| Sbjct 61 GGGAGAGGAATTGATTAACCATTACCTGAAGAACAAAAATCTGGGTACAAAAACTTTGCT 120 Query 256 CGTTGATGAAGCTATTAGCGAGATCAACATCTTGAGTCACAAACCCAGCAAGGATTTGCC 315 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 CGTTGATGAAGCCATTAGCGAGATCAACATCTTGAGCCACAAACCCAGCAAGGATTTGCC 180 Query 316 TAAGTTAGCTAGGATCCAATCGGAAGATCTTGAATGGTATTTCTTCTCTCCGATTGAGTA 375 ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 181 TAAGTTAGCTAAGATCCAATCGGAAGATCTTGAATGGTACTTCTTCTCTCTGATTGAGTA 240 Query 376 CACGAACCCGAATAAGA-TGAAAATGAAGAGGACGACAGGTTCTGGGTTTTGGAAACCTA 434 |||||||| ||| |||| ||||| |||||||||| |||||| |||||||||||||||||| Sbjct 241 CACGAACCGGAAGAAGAATGAAA-TGAAGAGGACTACAGGTACTGGGTTTTGGAAACCTA 299 Query 435 CTGGTGTTGATCGGGAAATTAGGGATAAAAGAGGAAATGGTGTTGTGATAGGGATTAAGA 494 |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||| Sbjct 300 CTGGTGTTGATCGGAAAATTAGGGATAAAAGAGGAAATGGTGTTGTGATCGGTTTTAAGA 359 Query 495 AGACGCTTGTGTACCATGAAGGTAAGAGTCCTCATGGAGTTAGAACTCCTTGGGTTATGC 554 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| Sbjct 360 AGACGCTTGTGTACCATGAAGGTAAGGGTCCTAATGGAGTTAGAACTCCTTGGGCTATGC 419 Query 555 ACGAGTATCACATCACTTGCTTGCCTCATCATAAGAGGAAATATGTTGTCTGCCAAGTAA 614 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 420 ACGAGTATCACATCACTTGCTTGCCTCATGATAAGAGGAAATATGTTATCTGCCAAGTAA 479 Query 615 AGTATAAGGGTGAAGCTGCAGAAATTTCATATGAGCCAAGTCCCTCTTTGGTATCCGATT 674 ||||||||||| |||||||||| ||||||||||||||||||| ||| | | || || | Sbjct 480 AGTATAAGGGTAAAGCTGCAGACATTTCATATGAGCCAAGTCGCTCC--GAT-TC-GAAT 535 Query 675 CGCATACCGTCATAGCGATTACCGGAGAACCGGAACCTGAGCTTCAGGTTGAGCAGCCAG 734 | |||| | |||||||| | ||| | || ||||||||||||||||||||||||| Sbjct 536 A-C-TACC---AGAGCGATTAACAGAGCGGCTGAGCCTGAGCTTCAGGTTGAGCAGCCAG 590 Query 735 GTAAAGAAAATCTCTTGGGTATGTCTGTAGATGATTTGATAGAACCA-ATGAACCAACAA 793 ||| ||||||| |||||||||||||| ||||||||||| |||| | | || |||| || Sbjct 591 GTAGAGAAAATTTCTTGGGTATGTCTTTAGATGATTTG---GAACAAGAGGATCCAAAAA 647 Query 794 GA-G---G-AGCCACAAGGTCCTCACTTAGC-TCCGAATGATGATGAGTTTATACGTGGA 847 | | |||||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct 648 CTTGCTTGCAGCCACAAGGTCCTCACTTAGCCTT-GAATGATGATGAGTTTATCCGTGGA 706 Query 848 TTGAGGCATGTTGATCGAGGGACG-GTTGAATATTTGTTTGCCAATGAAGAAAACATGGA 906 ||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || Sbjct 707 TTGAGGCATGTTGATCGAGA-ACAAGTTGAATATTTGTTCGCCAATGAAGAAAACATTGA 765 Query 907 TGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTCTCTGA 966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 TGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTCTCTGA 825 Query 967 GTGGGAGGGATTTAACGCAGACACCTTTTTCAGCGACAACAACAATAACTATAACCTTAA 1026 |||||| |||||||| |||||||| |||||||||||||||||||||||| | |||||||| Sbjct 826 GTGGGATGGATTTAATGCAGACACGTTTTTCAGCGACAACAACAATAACAACAACCTTAA 885 Query 1027 CGTGCATCATCAACTAACGCCTTACGGCGATGGCTATTTGAATGCAT-TT-T--CGG-GT 1081 ||||||||| | ||||||| |||||| |||| ||| ||||||| || | ||| | Sbjct 886 CGTGCATCA--A-CTAACGCGTTACGGAGATGATTATCGGAATGCAGGTTATAACGGAGG 942 Query 1082 TA-TAACGAAGG-GAATCC-TCCCGATCACGAATTAGTGATGCAAGAGAACCGCAACGAT 1138 | | ||||| | | | |||| |||| |||||| | ||||||||||||||||||||| Sbjct 943 GAATTTTGAAGGCG--TGCATCCCTATCAAGAATTAATAATGCAAGAGAACCGCAACGAT 1000 Query 1139 CACATGCCAAGGAAACCTGTGACAGGGACCATTGATTATAGCAGCGATAGTGGCAGTGAT 1198 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 CACATGCCAAAGAAACCTTTGACAGGGACCATTGATTATAGCAGCGATAGTGGCAGTGAT 1060 Query 1199 GCTGGATCCATATCTACAACGAGTTACCAAGGAACATCAAGTCCAAATATTAGTGTTGGT 1258 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1061 GCTGGATCGATATCTACAACGAGTTACCAAGGAATATCAAGTCCAAATATTAGTGTTGGT 1120 Query 1259 AGTTCAAGTAGACACTTGTCAAGTTGCTCAAGCACAGACTCTTGCAAAGATCTACAAACT 1318 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1121 AGTTCAAGCAGACGCTTGTCAAGTTGCTCAAGCACAGACTCTTGCAAAGATCTACAAACT 1180 Query 1319 TGTACAGATCCTTCAATAATCAGTAGAGAGATCCGGGAAT-T-AAC--ACA-A--G-AG- 1369 | | ||||||||||||| ||||||||||| |||||||| | ||| ||| | | | Sbjct 1181 TCTGCAGATCCTTCAAT---CAGTAGAGAGACCCGGGAATATCAACTCACACAACGCACT 1237 Query 1370 GTG--A--AA--CAAGA----AATC--------CCAAGAGCTGTTGATGCACCCATGAAC 1411 || | || ||||| || | |||||||||||||||||| |||||||| Sbjct 1238 GTACCATCAAAACAAGAGGTGAAACAAGAGATTCCAAGAGCTGTTGATGCATCCATGAAC 1297 Query 1412 AATGAGTCATCTTTGGTGAAAACAGAGAAGAAAG-GCTTGTTTATTGTAGAGGACGCAAT 1470 |||||||| |||||||||||||||||| |||| | ||||||||||| ||||||||||||| Sbjct 1298 AATGAGTCGTCTTTGGTGAAAACAGAGGAGAA-GTGCTTGTTTATTCTAGAGGACGCAAT 1356 Query 1471 GGAGAGAAACCGCAAGAAACCACGATTTATCTATCTCATGAAGATGATCATAGGCAACAT 1530 ||||||||||||||||| |||||| |||||||||||||||| | ||||||| ||| Sbjct 1357 GGAGAGAAACCGCAAGACACCACGGTTTATCTATCTCATGA---T---CATAGGCTTCAT 1410 Query 1531 -CAT---ATCGGTTTTACTACCCGTCAAAAGATTGATCCCGGTGAAGAAGTTATGA 1582 | | |||||||||||||||||||||| |||||| |||| |||||||||| ||| Sbjct 1411 TCGTCGTATCGGTTTTACTACCCGTCAAA-GATTGAACCCGCTGAAGAAGTTTTGA 1465 > Ahg352687 jgi|Araly1|352687|fgenesh1_pg.C_scaffold_6003280 Length=1578 Score = 625 bits (338), Expect = 3e-178 Identities = 536/626 (86%), Gaps = 35/626 (6%) Strand=Plus/Plus Query 610 AGTAAAGTATAAGGGTGAAGCTGCAGAAATTTCATATGAGCCAAGTCCCTCTTTGGTATC 669 ||||||||||||||||||||||||||| ||||||||||||||||| || | || Sbjct 462 AGTAAAGTATAAGGGTGAAGCTGCAGACATTTCATATGAGCCAAG----TC----G-CTC 512 Query 670 CGATTCGCATACCGTCATAGCGATTACCGGAGAACCGGAACCTGAGCTTCAGGTTGAGCA 729 ||||||| |||| || |||||||| | ||| | || |||||||||||||||||||| Sbjct 513 CGATTCGAATACTACCAGAGCGATTAACAGAGCGGCTGAGCCTGAGCTTCAGGTTGAGCA 572 Query 730 GCCAGGTAAAGAAAATCTCTTGGGTATGTCTGTAGATGATTTGATAGAACCA-ATGAACC 788 |||||||| ||||||| |||||||||||||| ||||||||||| |||| | | || || Sbjct 573 GCCAGGTAGAGAAAATTTCTTGGGTATGTCTTTAGATGATTTG---GAACAAGAGGATCC 629 Query 789 AACAA---G--AGGAGCCACAAGGTCCTCACTTAG-CTCCGAATGATGATGAGTTTATAC 842 || || | | ||||||||||||||||||||| || |||||||||||||||||| | Sbjct 630 AAAAACTTGCTTGCAGCCACAAGGTCCTCACTTAGCCT-TGAATGATGATGAGTTTATCC 688 Query 843 GTGGATTGAGGCATGTTGATCGAGGGAC-GGTTGAATATTTGTTTGCCAATGAAGAAAAC 901 ||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||| Sbjct 689 GTGGATTGAGGCATGTTGATCGA-GAACAAGTTGAATATTTGTTCGCCAATGAAGAAAAC 747 Query 902 ATGGATGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTC 961 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 748 ATTGATGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTC 807 Query 962 TCTGAGTGGGAGGGATTTAACGCAGACACCTTTTTCAGCGACAACAACAATAACTATAAC 1021 ||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | ||| Sbjct 808 TCTGAGTGGGATGGATTTAATGCAGACACGTTTTTCAGCGACAACAACAATAACAACAAC 867 Query 1022 CTTAACGTGCATCATCAACTAACGCCTTACGGCGATGGCTATTTGAATGCAT-TT-T--C 1077 |||||||||||||| | ||||||| |||||| |||| ||| ||||||| || | | Sbjct 868 CTTAACGTGCATCA--A-CTAACGCGTTACGGAGATGATTATCGGAATGCAGGTTATAAC 924 Query 1078 GG-GTTA-TAACGAAGG-GAATCC-TCCCGATCACGAATTAGTGATGCAAGAGAACCGCA 1133 || | | | ||||| | | | |||| |||| |||||| | |||||||||||||||| Sbjct 925 GGAGGGAATTTTGAAGGCG--TGCATCCCTATCAAGAATTAATAATGCAAGAGAACCGCA 982 Query 1134 ACGATCACATGCCAAGGAAACCTGTGACAGGGACCATTGATTATAGCAGCGATAGTGGCA 1193 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 983 ACGATCACATGCCAAAGAAACCTTTGACAGGGACCATTGATTATAGCAGCGATAGTAGCA 1042 Query 1194 GTGATGCTGGATCCATATCTACAACG 1219 ||||||||||||| |||||||||||| Sbjct 1043 GTGATGCTGGATCGATATCTACAACG 1068 > Ahg327634 jgi|Araly1|327634|fgenesh1_pm.C_scaffold_6002854 Length=1236 Score = 161 bits (87), Expect = 1e-38 Identities = 136/159 (86%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 1123 AGAGAACCGCAACGATCACATGCCAAGGAAACCTGTGACAGGGACCA---TTGATTATAG 1179 |||||||||||||||||||| ||||| |||| || || |||||| | |||||||||| Sbjct 846 AGAGAACCGCAACGATCACAGGCCAAAGAAAGCTTTGTCAGGGATTATTGTTGATTATAG 905 Query 1180 CAGCGATAGTGGCAGTGATGCTGGATCCATATCTACAACGAGTTACCAAGGAACATCAAG 1239 ||| |||||| |||||||||| ||| |||||| ||||||||||||||||||||||||| Sbjct 906 CAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACATCAAG 965 Query 1240 TCCAAAT-AT--TAGTGTTGGTAGTTCAAGTAGACACTT 1275 |||| | || ||||||||||||||||| ||||||||| Sbjct 966 TCCAGGTGATGATAGTGTTGGTAGTTCAAATAGACACTT 1004 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59268421220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5