BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01550.1 Length=1723 Score E Sequences producing significant alignments: (Bits) Value Ahg327634 jgi|Araly1|327634|fgenesh1_pm.C_scaffold_6002854 1572 0.0 > Ahg327634 jgi|Araly1|327634|fgenesh1_pm.C_scaffold_6002854 Length=1236 Score = 1572 bits (851), Expect = 0.0 Identities = 956/1007 (95%), Gaps = 6/1007 (1%) Strand=Plus/Plus Query 187 ATGGTGAAAGATCTGGTTGGGTATAGATTTTATCCAACGGGAGAGGAATTGATAAACCAT 246 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGAAAGATCTGGTAGGGTATAGATTTTATCCAACGGGAGAGGAATTGATAAACCAC 60 Query 247 TATCTAAAGAACAAAATTTTGGGTAAGACTTGGCTCGTCGACGAAGCCATTAGCGAGATC 306 || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TACCTTAAGAACAAAATTCTGGGTAAGACTTGGCTCGTCGACGAAGCCATTAGCGAGATC 120 Query 307 AACATCTGTAGTTACGACCCAATTTACTTGCCTTCTTTATCGAAGATAAAATCGGATGAT 366 |||||||||||||||||||| |||||||||||||| ||||||||| | ||||| || ||| Sbjct 121 AACATCTGTAGTTACGACCCTATTTACTTGCCTTCGTTATCGAAGCTCAAATCTGACGAT 180 Query 367 CCTGTGTGGTACTTCTTCTGTCCAAAGGAGTATACTTCTGCGAAGAAGAAGGTAACGAAG 426 || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 CCGGTTTGGTACTTCTTCTGTCCAAAGGAGTACACTTCTGCGAAGAAGAAGGTAACGAAG 240 Query 427 AGGACTACAAGTTCAGGGTATTGGAAAGCTACTGGTGTTGATAGGAAAATCAAAGATAAG 486 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 241 AGGACTACAAGTTCTGGGTATTGGAAAGCTACTGGTGTTGATCGGAAAATCAAAGATAAG 300 Query 487 AGAGGTAATCGCGGCGAGATTGGGATAAAGAAGACGCTTGTGTATTATGAAGGTAGAGTT 546 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 301 AGAGGTAATCGCGGCGAGATCGGGATTAAGAAGACGCTTGTGTATTATGAAGGTAGAGTT 360 Query 547 CCTAAAGGTGTTTGGACTCCTTGGGTTATGCATGAGTATCACATCACTTGTTTGCCTCAA 606 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCTAAAGGAGTTTGGACTCCTTGGGTTATGCATGAGTATCACATCACTTGTTTGCCTCAA 420 Query 607 GATCAGAGGAACTATGTTATCTGCCAAGTGATGTATAAGGGTGAAGATGGAGACGTCCCA 666 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 421 GATCAGAGGAACTATGTTATCTGCCAAGTAATGTATAAGGGTGAAGATGGAGACGTCCCA 480 Query 667 TCTGGTGGTAACAACTCGAGTGAGCCGAGTCAATCTTTGGTCTCTGATTCGAATACTGTC 726 || |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 481 TCAGGTGGTAATAACTCGAGTGAGCCGAGTCAATCTATGGTCTCTGATTCGAATACTGTC 540 Query 727 AGAGCTACGAGTCCCACAGCGCTTGAGTTTGAGAAGCCAGGTCAAGAAAATTTCTTTGGT 786 |||| |||| | ||||||||| ||| |||||| |||||||||||||||||||||||||| Sbjct 541 AGAGAGACGATTACCACAGCGCCTGAATTTGAGCAGCCAGGTCAAGAAAATTTCTTTGGT 600 Query 787 ATGTCTGTGGATGATTTGGGGACTCCAAAGAAT--G----AACAAGAAGATTTCTCTTTG 840 |||||||||||||||||| | ||||||| |||| | ||||||||||||||||| || Sbjct 601 ATGTCTGTGGATGATTTGAGAACTCCAATGAATGAGCAAAAACAAGAAGATTTCTCTCTG 660 Query 841 TGGGATGTACTGGATCCAGACATGTTATTCAGTGACAATAACAATCCTACTGTGCATCCA 900 ||||||||| ||||||||||||||||||||||||| || |||||| |||||||||| ||| Sbjct 661 TGGGATGTATTGGATCCAGACATGTTATTCAGTGATAACAACAATTCTACTGTGCAGCCA 720 Query 901 CAAGCTCCTCACTTAACCCCGAATGATGATGAGTTTCTCGGTGGATTGAGGCATGTTAAC 960 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CAAGCTCCTCACTTAGCCCCGAATGATGATGAGTTTCTCGGTGGATTGAGGCATGTTAAC 780 Query 961 CGAGAGCAGGTTGAATATTTGTTTGCCAATGAAGATTTCATATCCAGACCAACCTTATCT 1020 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 781 CGAGAGCAGGTTGAATATTTGTTTGCCAATGAAGATTTAATATCCAGACCAACCTTATCT 840 Query 1021 ATGACCGAGAACCGCAACGATCACAGGCCAAAGAAGGCTTTGTCAGGGATTATTGTTGAT 1080 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 841 ATGACAGAGAACCGCAACGATCACAGGCCAAAGAAAGCTTTGTCAGGGATTATTGTTGAT 900 Query 1081 TATAGCAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACA 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TATAGCAGTGATAGTAATAGTGATGCTGAATCGATATCTGCAACGAGTTACCAAGGAACA 960 Query 1141 TCAAGTCCAGGTGATGATAGTGTTGGTAGTTCGAATAGACAATTTCT 1187 |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 961 TCAAGTCCAGGTGATGATAGTGTTGGTAGTTCAAATAGACACTTTCT 1007 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64639145765 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5