BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01600.1 Length=752 Score E Sequences producing significant alignments: (Bits) Value Ahg490418 jgi|Araly1|490418|fgenesh2_kg.6__3552__AT4G01600.1 1158 0.0 > Ahg490418 jgi|Araly1|490418|fgenesh2_kg.6__3552__AT4G01600.1 Length=735 Score = 1158 bits (627), Expect = 0.0 Identities = 701/737 (95%), Gaps = 4/737 (1%) Strand=Plus/Plus Query 8 CATCATCATTAGGTCTAATATCATGCGTCCACAATACAAAGACGTGAACGATAAATTAGA 67 ||||| ||||| ||||| || |||| |||| |||||||| || ||||||||||||||||| Sbjct 1 CATCACCATTATGTCTACTAGCATGAGTCCGCAATACAAGGATGTGAACGATAAATTAGA 60 Query 68 CTCGACGGCCAAGCACAAAACCAACAGCCATGGCGGTCGTTATGA-TAATCCTTACGTCC 126 ||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 61 CTCGACGGCTAAGCACAAAACCAACAGCCATGGCGGTCGTTAT-AGTAATCCTTACGTCC 119 Query 127 ACATTACTAGTCCCACATCAGCTTCTGATAAGAGGTCGAAGGATAAGGTTCTTGAGGTGT 186 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ACATTACTACTCCCACATCAGCTTCTGATAAGAGGTCGAAGGATAAGGTTCTTGAGGTGT 179 Query 187 TGAATCGCTGTGGGAAGAAAGTAGAGGACGCTACTCGCAAAGCGGAAGCATTAGTC-GGA 245 ||||||| |||||||||||||||||||||| |||||||||||||||||| |||| | | Sbjct 180 TGAATCGGTGTGGGAAGAAAGTAGAGGACGTTACTCGCAAAGCGGAAGCTTTAG-CTAGC 238 Query 246 GGTTTAAAAGACCACCTGAAGTTTAGTCCTAGCATAAGTGATGCAGCAATGGCTAGGCTT 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GGTTTAAAAGACCACCTGAAGTTTAGTCCTAGCATAAGTGATGCAGCAATGGCTAGGCTT 298 Query 306 TCTCAAGGCACTAAGATGATCGTTGAAGGAGGACCAGAGAGAGTGTTTCAACGAGAGTTT 365 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 299 TCTCAAGGCACTAAAATGATCGTTGAAGGAGGCCCAGAGAGAGTGTTTCAACGAGAGTTT 358 Query 366 GGTGTTTTAGCTGTAGAGAAACTTTTAGATTCGTTTGTTTGCTACATATCGACTACTTCG 425 | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 359 GATGTTTTAGCTGCAGAGATACTTTTAGATTCGTTTGTTTGCTACATATCGACTACTTCG 418 Query 426 GGACCAGTGACCGGAGTGATATACATTTCCAACAGAAGAATCGCTTTTTGTAGCGACTAT 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GGACCAGTGACCGGAGTGATATACATTTCCAACAGAAGAATCGCTTTTTGTAGCGACTAT 478 Query 486 GCCATTCGTCTTCCTTCTTCTGCCGGTGGAAACGGTGTTGCGGCATATTACAAGGTGGTG 545 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 479 GCCATTCGTCTTCCTTCTTCTGTCGGTGGAAACGGTGTTGCGGCATACTACAAGGTGGTG 538 Query 546 ATGGAGTGGGAGAAGATAAGTAGCATTAGTTCATCAACGAACGTGTTGAAGCCAAGTGAG 605 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 539 ATGGAGTGGGAGAAGATACGTAGCATTAGTTCATCAACGAACGTGTTGAAGCCAAGTCAA 598 Query 606 AGATACGTGCATATGGTGACACGAGATGGGTTTGAGTTTTGGTTCATGGGCTTTGTCTCC 665 || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 599 AGGTATGTGCATATGGTGACACAAGATGGGTTTGAGTTTTGGTTCATGGGCTTTGTCTCC 658 Query 666 TACATCGATGCTTTCAATTGTCTCAACAAAGCTCTCCTCAATTCCCGTTGTAATCATGCC 725 |||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| Sbjct 659 TACATCGATGCTTTCAATTGTCTCAACAAAGCTCTCCTTAATTCCCGTTGTGGTCGTGCC 718 Query 726 ATGTAATCAAATTCTAA 742 ||||||||||||||||| Sbjct 719 ATGTAATCAAATTCTAA 735 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27715360659 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5