BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01660.1
Length=2141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490411 jgi|Araly1|490411|fgenesh2_kg.6__3545__AT4G01660.1 3079 0.0
Ahg942649 jgi|Araly1|942649|scaffold_603193.1 222 7e-57
Ahg913263 jgi|Araly1|913263|Al_scaffold_0001_3517 213 4e-54
> Ahg490411 jgi|Araly1|490411|fgenesh2_kg.6__3545__AT4G01660.1
Length=2069
Score = 3079 bits (1667), Expect = 0.0
Identities = 1914/2033 (94%), Gaps = 18/2033 (1%)
Strand=Plus/Plus
Query 103 TTCGTGATGAGTTCGTGGAGCAAGAGCTTTACCAGGCTCGTCAATGGTGTTTCGCTTGTA 162
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 48 TTCGTGATGAGTTCGTGGAGCAAGAGCTTTGGTAGGCTCTTCAATGGTGTATCGCTTGTA 107
Query 163 GCGAAAGAGATCTATAATCAGTCACCGGAGTTACAAAGAGCGAGAAATGGAGATCTCGAA 222
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 108 GCGAAAGAGATCTATAATCAGTCACCGGAGTTACAGAGAGCGAGAAATGGAGATCTCGAA 167
Query 223 GGTTTAATAACGTCTTCAGGGAAAAAAGCTTTGGTTGCCGCCACCGACTTAGTCGGACTT 282
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 168 GGCTTAATTACGTCTTCAGGGAAAAAAGCTTTGGTTGCTGCCACCGACTTGGTCGGACTT 227
Query 283 ACCTCCGGGAAGCTTCGCGAACTCTCGATTCGTCGATCTAAGGAACCTTCCGTTGTTTAT 342
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 228 ACCTCCGGGAAGCTTCGTGAGCTCTCGATTCGTCGATCTAAGGAACCTTCCGTTGTTTAC 287
Query 343 TTCGACGAAGGAGATAATAAGGATAACGTCGTCGCAACGCCTGAGGTTAGATCTGTTAAC 402
||||||||||| |||||||| |||| |||||||| |||||||||||||||||||| || |
Sbjct 288 TTCGACGAAGGGGATAATAAAGATACCGTCGTCGTAACGCCTGAGGTTAGATCTGATAGC 347
Query 403 ACCAAACCTAGCGAGAAAATCGTTGATTCGAAAGTCCTGAGAAATGAATTTAGCGATGAA 462
||| ||||||||||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 348 ACCGAACCTAGCGAGAAAATCGTTGATTCGAGAGACCTGAGAAGCGAATTTAGTGATGAA 407
Query 463 GTTAAGAATTCAAATAGAGAAGGTGAGATTAAGGTTTCAGGCGTTGAAG-CGGGAGAGAT 521
| ||||| |||||||||||||| ||||||||||||||| || | || | | |||||
Sbjct 408 GCTAAGATTTCAAATAGAGAAGAAGAGATTAAGGTTTCAAGCAACGTAGAC-AGCGAGAT 466
Query 522 TATTGGAGTTAGAGCTGTTGAATCAGGTACGGTAACGGAAGCATCATCTCCGTCGGAGGT 581
|||||||||| |||||| |||||||||| |||| | ||||||||| || |||||||
Sbjct 467 TATTGGAGTTCGAGCTGCTGAATCAGGTGCGGT----G--GCATCATCTTCGGCGGAGGT 520
Query 582 AGTACCTCCGGTGAAGAGACGGAGACCTAGAGAGAGGAAGGTTCCTTCAACTCCTATGGC 641
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 521 AGTAGCTCCGGTGAAGAGACGGAGACCTAGAGAGAGGAAGGTTCCATCAACTCCTATGGC 580
Query 642 AAGAGCTTATGGGTTTTTTAATTTAGGAGCTGCTCTTGCTTGGGGAGCTGTTAAAGAATC 701
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AAGAGCTTACGGGTTTTTCAATTTAGGAGCTGCTCTTGCTTGGGGAGCTGTTAAAGAATC 640
Query 702 TACGTATAGGATGGTAAATGGGACACCAATGACACCAGACAATCAGCCTGCGTTATCGTC 761
|||||||||||| || |||||||||||||||||| || |||||| ||||| |||||||
Sbjct 641 TACGTATAGGATTGTGAATGGGACACCAATGACAGAAGGCAATCAACCTGCACTATCGTC 700
Query 762 TTTGATGTCTAAGGAAAATGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGC 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TTTGATGTCTAAGGAAAATGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGC 760
Query 822 TGCTCTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGTTCCTGCTCCGAT 881
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 761 TGCTCTTAAAGTTGGGCAAATGTTGAGTATACAGGACGAGAGTCTTGTTCCTGCTCCGAT 820
Query 882 CTTGAATGCTCTGGAATATGTGCGTCAAGGTGCTGATGTGATGCCAAGGAGTCAACTTAA 941
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CTTGAATGCTCTGGAGTATGTGCGTCAAGGTGCTGATGTGATGCCAAGGAGTCAACTTAA 880
Query 942 TCCAGTTTTGGATGCTGAGTTAGGTTCC-AATTGGCAATCCAAGTTGACTAGTTTTGATT 1000
||| ||||||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 881 TCCTGTTTTGGATGCTGAGTT-GGGTCCTAATTGGCAATCCAAGTTGACTAGTTTTGATT 939
Query 1001 ATGAACCGCTAGCGGCAGCGAGTATTGGTCAGGTGCACAGAGCTGTTACTAAAGATGGAT 1060
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 940 ATGAACCGCTAGCGGCAGCGAGTATTGGTCAGGTGCACCGAGCTGTCACTAAAGATGGAT 999
Query 1061 TAGAAGTTGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATTG 1120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1000 TAGAAGTGGCAATGAAGATTCAGTACCCTGGCGTTGCCAACAGCATTGAAAGTGATATCG 1059
Query 1121 AAAATGTCAGACGCTTGTTAAATTATACAAATCTAATTCCAAAGGGACTGTTTCTAGACA 1180
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1060 AAAATGTCAGACGCTTGTTAAATTATACAAATCTTATTCCAAAGGGACTCTTTCTGGACA 1119
Query 1181 GAGCTATAAAGGTTGCCAAAGAAGAGTTGGCGCAGGAGTGTGACTATGAAATCGAAGCAG 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GAGCTATAAAGGTTGCCAAAGAAGAGTTGGCGCAGGAGTGTGACTATGAAATCGAAGCAG 1179
Query 1241 TCAGTCAAAAGCGCTTTCGTGATTTGCTTTCAGACACTCCAGGGTTTTATGTGCCGCTTG 1300
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1180 TCAGTCAAAAGCGCTTTCGTGATTTGCTTTCAGACACTCCAGGGTTTTATGTTCCTCTTG 1239
Query 1301 TGGTAGATGAGACTTCAAGCAAAAAGATTCTAACCACTGAACTTATATCTGGGATCCCCA 1360
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1240 TGGTAGATGAGATTTCAAGCAAAAAGATTCTAACCACAGAACTTATATCTGGGATCCCCA 1299
Query 1361 TTGATAAAGTAGCGTTGTTAGATCAGAAAACACGAGATTATGTTGGGAGGAAGATGCTAG 1420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 TTGATAAAGTAGCCTTGTTAGATCAGAAAACACGAGATTATGTTGGGAGGAAGATGCTAG 1359
Query 1421 AACTCACTTTGAAGGAGCTCTTTGTCTTCCGCTTTATGCAGACGGATCCAAACTGGGGTA 1480
|||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1360 AACTCACTCTAAAGGAGCTCTTCATCTTCCGCTTCATGCAGACGGATCCAAACTGGGGTA 1419
Query 1481 ACTTCTTATACAATGAAGCCACAAAGACAATAAATCTTATCGATTTCGGAGCAGCTCGTG 1540
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1420 ACTTCTTATACAATGAAGCCACAAAAACAATAAATCTTATTGATTTCGGAGCAGCTCGTG 1479
Query 1541 ATTACCCCAAGAAATTCGTCGATGACTATCTACGAATGGTGATGGCATGTGCAGAAAAAG 1600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 ATTACCCCAAAAAATTCGTCGATGACTATCTACGAATGGTGATGGCATGTGCAGAAAAAG 1539
Query 1601 ACAGTGAAGGAGTGATTGAAATGTCTAGGAGACTCGGGTTCTTAACCGGAGATGAATCAG 1660
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1540 ACAGTGAAGGAGTGATTGAAATGTCAAGGAGACTCGGGTTTTTAACCGGAGATGAATCAG 1599
Query 1661 ATGTAATGCTAGACGCTCATGTCCAAGCCGGTTTCATAGTGGGTCTACCTTTTGCAGAAC 1720
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 ACGTAATGCTAGACGCTCATGTCCAAGCCGGTTTCATAGTGGGTCTACCTTTTGCAGAAC 1659
Query 1721 CCGGTGGCTATGCTTTCCGAACCAACAACATTGCTTCTAGTATCTCCAATTTAGGAGCAA 1780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 CCGGTGGCTACGCTTTCCGAACCAACAACATTGCTTCTAGTATCTCCAATTTAGGAGCAA 1719
Query 1781 CCATGTTGAAACATAGACTCAGTCCACCACCCGATGAAGCCTATAGCCTTCACCGTAAAT 1840
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1720 CCATGTTGAAACATAGACTCACTCCACCACCCGATGAAGCCTATAGCCTTCACCGTAAAT 1779
Query 1841 TATCCGGCGCTTTCTTGGCTTGTATCAAGCTTGGAGCCACCGTCCCTTGCCGTGATCTAT 1900
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1780 TATCTGGCGCTTTCTTGGCTTGTATCAAGCTTGGAGCCACCGTCCCTTGCCGTGATCTCT 1839
Query 1901 TGCTCCAAGTTTACAACAAGTATCAGTTCGATGATGAGCCACAAGATCCCGTAGTAGCTA 1960
|||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |
Sbjct 1840 TGCTCCAAGTTTACAACAAGTATCAGTTTGATGATGAGCCACAAGGTCCAATAGTAGCGA 1899
Query 1961 CAAGCTCTGTTTCTTCA---TAGCTCCCTCATACACACACACTACATTAATGATTTTTTC 2017
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 1900 CAAGCTCTGTTTCTTCAACATAGCTCTCTCATACACACACAATACATTAATGATTTTTTC 1959
Query 2018 TCGTCCCCTTGTAGGGAGTATAAAACGATTCTTTCTTTGGTACACCTTCGAGTTTAATTT 2077
|| |||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1960 TCTTCCCTTTGTGGGGAGTA-AAAACGATTCTTTCT--GGTACACCTTCGAGTTTAATTT 2016
Query 2078 AGTATAATTTT--TTCAATAATGTAAAATGTTAAATATTACAATGCTGGAGAA 2128
|| |||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 2017 AGAATAAAAAAAATTCAATAATGTAAAATGTTGAATATTACAATGCTGGAGAA 2069
> Ahg942649 jgi|Araly1|942649|scaffold_603193.1
Length=250
Score = 222 bits (120), Expect = 7e-57
Identities = 166/188 (88%), Gaps = 4/188 (2%)
Strand=Plus/Plus
Query 692 TTAAAGAATCTA-CGTATAGGATGGTAAATGGGACACCAATGACACCAGACAATCAGCCT 750
|||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1 TTAAAGAATCTATC-TATAGGATGGTAAATGGGACACCAATGACACAAGACAATCAACCT 59
Query 751 GC-GTTATCGTCTTTGATGTCTAAGGAAAATGCTGAAAGATTGGCTCTTGGATTGTGTGA 809
|| || ||| ||||| |||||||| |||| ||| |||| ||| ||||||||||| |||||
Sbjct 60 GCAGT-ATCTTCTTTCATGTCTAATGAAAGTGCAGAAACATTAGCTCTTGGATTATGTGA 118
Query 810 AATGCGTGGAGCTGCTCTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGT 869
|||||||||||||||||||||| |||| |||| ||||||||||| || ||| |||| ||
Sbjct 119 AATGCGTGGAGCTGCTCTTAAATTTGGGAAAATATTGAGTATACATGATGAGGGTCTTGT 178
Query 870 TCCTGCTC 877
||||||||
Sbjct 179 TCCTGCTC 186
> Ahg913263 jgi|Araly1|913263|Al_scaffold_0001_3517
Length=351
Score = 213 bits (115), Expect = 4e-54
Identities = 153/172 (89%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 706 TATAGGATGGTAAATGGGACACCAATGACACCAGACAATCAGCCTGCGTTATCGTCTTTG 765
||||||||||||||||||||||||||||||| ||||||||| | ||| |||| |||||
Sbjct 46 TATAGGATGGTAAATGGGACACCAATGACACAAGACAATCAACTTGCACTATCTTCTTTC 105
Query 766 ATGTCTAAGGAAAATGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGCTGCT 825
|||||||| |||| ||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 106 ATGTCTAAAGAAAGTGCAGATAGATTAGCTCTTGGATTGTGTGAAATGCGTGGAGCTGCT 165
Query 826 CTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGTTCCTGCTC 877
|||||| |||| |||| ||||||||||| || |||||||| ||||||||||
Sbjct 166 CTTAAATTTGGGAAAATATTGAGTATACATGATGAGAGTCTTGTTCCTGCTC 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80560868175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5