BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01710.1 Length=576 Score E Sequences producing significant alignments: (Bits) Value Ahg490565 jgi|Araly1|490565|fgenesh2_kg.6__3699__AT4G01710.1 682 0.0 Ahg496759 jgi|Araly1|496759|fgenesh2_kg.8__2575__AT5G65274.1 418 2e-116 > Ahg490565 jgi|Araly1|490565|fgenesh2_kg.6__3699__AT4G01710.1 Length=499 Score = 682 bits (369), Expect = 0.0 Identities = 408/427 (96%), Gaps = 1/427 (0%) Strand=Plus/Plus Query 22 GAATGGCAGAATTCGTTGAAGCTGATAACGCAGAAGCAATAATCGCGAGGATCGAAACCA 81 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 2 GAATGGCAGAATTCGTTGAGGCTGATAATGCAGAAGCAATAATCGCGAGGATCGAAACCA 61 Query 82 AATCGAGGAAGATTGAAAGCCTACTCAAACAGTACAAACATGTAGAAGCTTTGAAAACGG 141 ||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 62 AATCGCGGAAGATTGAAAGCTTACTCAAACAGTACAAACATGTCGAAGCTTTGAAAACGG 121 Query 142 CTCTTGAAGGTTCGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAG 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 CTCTTGAAGGTTCGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAG 181 Query 202 TTGTGCACAGAGCTTTAATGGCCATTAAGGATATTGACGGAATGCTCAATGCTCTTGATG 261 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 182 TTGTGCACAGAGCTATAATGGCCATAAAGGATATTGACGGAATGCTCAATGCTCTTGATG 241 Query 262 TCGAATATTACGACATTCTCATGAAGTACTTGTACAGAGGACTTTCTACTGGGGACCGAC 321 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 242 CCGAATATTACGACATTCTCATGAAGTACTTGTACAGAGGCCTTTCTACTGGCGACCGAC 301 Query 322 CCACCTGCGATCAGTGCCTGAAGATTCACGAGAAACTCACTGAGAGAGCTGGTCTCGGTT 381 ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| Sbjct 302 CCACCTGCGATCAGTGCTTGAAGATTCATGAGAAACTCACAGAGAGAGCTGGTCTCGGTT 361 Query 382 GCATTCTCCGATGTCTTACTGATACCATCAACACCGTTTGATCCATCATTCCCTCTTATG 441 |||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||| ||| Sbjct 362 GCATTCTCCGCTGTCTTACTGATACCATAAACACCGTTTGATCCATGATTGCCTCTAATG 421 Query 442 TATTATT 448 ||| ||| Sbjct 422 TAT-ATT 427 > Ahg496759 jgi|Araly1|496759|fgenesh2_kg.8__2575__AT5G65274.1 Length=405 Score = 418 bits (226), Expect = 2e-116 Identities = 329/378 (87%), Gaps = 10/378 (3%) Strand=Plus/Plus Query 36 GTTGAAGCTGATAACGCAGAA-GCAATAATCGCGAGGATCGAAACCAAATCG-AGGAAGA 93 |||||||||||||| ||| || | |||||| || |||||||||||||||||| | ||||| Sbjct 22 GTTGAAGCTGATAATGCA-AATGAAATAATGGCAAGGATCGAAACCAAATCGCA-GAAGA 79 Query 94 TTGAAAGCCTACTCAAACAGTACAAACATGTAGAAGCTTTGAAAACGGCTCTTGAAGGTT 153 |||||||| |||||||||| ||||||||||| |||||| ||||||| |||||||| |||| Sbjct 80 TTGAAAGCTTACTCAAACACTACAAACATGTCGAAGCTCTGAAAACAGCTCTTGATGGTT 139 Query 154 CGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAGTTGTGCACAGAG 213 ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 CGCCTTTGACAACTTATGATGAACGTTGCAAGTCGGCTAATTGGATAGTTGTGCACAGAG 199 Query 214 CTTTAATGGCCATTAAGGATATTGACGGAATGCTCAATGCTCTTGATGTCGAATATTACG 273 || | ||||| || |||||||| ||||||||||| ||| |||||| || ||| ||||||| Sbjct 200 CTATCATGGCGATAAAGGATATCGACGGAATGCTAAATTCTCTTGCTGCCGAGTATTACG 259 Query 274 ACATTCTCATGAAGTACTTGTACAGAGGACTTTCTACTGGGGACCGA-CCCACCTGCGAT 332 |||||||||||||||||||||| ||||| ||||| |||||| || || ||||| ||||| Sbjct 260 ACATTCTCATGAAGTACTTGTATAGAGGTCTTTCGACTGGGAAC-GAACCCACATGCGAA 318 Query 333 CAGTGCCTGA-AGATTCACGAGAAACTCACT-GAGAGAGCTGGTCTCGGTTGCATTCTCC 390 || || ||| | |||||||||||||| | | |||||||||||||||||||||||||| | Sbjct 319 CAATGTTTGATA-ATTCACGAGAAACTAA-TAGAGAGAGCTGGTCTCGGTTGCATTCTGC 376 Query 391 GATGTCTTACTGATACCA 408 | ||||||| |||||||| Sbjct 377 GTTGTCTTAGTGATACCA 394 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21061885128 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5