BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01870.1 Length=2071 Score E Sequences producing significant alignments: (Bits) Value Ahg490390 jgi|Araly1|490390|fgenesh2_kg.6__3524__AT4G01870.1 2848 0.0 > Ahg490390 jgi|Araly1|490390|fgenesh2_kg.6__3524__AT4G01870.1 Length=2021 Score = 2848 bits (1542), Expect = 0.0 Identities = 1847/1994 (93%), Gaps = 22/1994 (1%) Strand=Plus/Plus Query 1 ATCAAAAACTCGACAATGGAAACTCCCAAAGGCACTATCATTTTCACCACCGTCGGTCGA 60 ||| ||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||| Sbjct 1 ATCCAAAACTCGACAATGGAAACTCCCAAAGGCACCATCATCTTCACCACCATTGGTCGA 60 Query 61 ACTCACTACGGCTTCGACGTCTTCTCTC-TCAACATAGCCACCTCCGTCGAACGCCGTTT 119 |||||||||||||||||||||||||||| || |||| |||||| ||||||||||||| || Sbjct 61 ACTCACTACGGCTTCGACGTCTTCTCTCTTC-ACATCGCCACCACCGTCGAACGCCGCTT 119 Query 120 AACAGACGGCGTTTCCGTGAACTTCAACGCTCAATTCGTCAACGATAAAAGCGATGATGT 179 ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct 120 AACAGACGGCGTTTCAGTTAACTTCAACGCTCAATTTGTCAACGATAAAAGCGATGATGT 179 Query 180 CGTCTTTGTTTCGGAAAGAAACGGATCCGCCAGGATTTACAAAACCCGATCCGGAATTTC 239 ||| |||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| Sbjct 180 CGTTTTTGTTTCGGAACGAAACGGATCCGCCCGGATTTACAAAACCCGACCCGGAATTTC 239 Query 240 T-AAGCCCGAGCAGA-TTCCCGGAGCTCCAGAGAGCTACTTCCACGACCGTCCTATCATC 297 | || |||||||| | ||||||||||||| || |||||||||||||||||||||||||| Sbjct 240 TGAA-CCCGAGCA-ACTTCCCGGAGCTCCGGAAAGCTACTTCCACGACCGTCCTATCATT 297 Query 298 ACTCAAAAC-AACAGACTCTATTTCATCTCTGCTCACGAGCAACCTGATCGTTATTTCAA 356 |||| || | ||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 298 ACTC-AATCAAACAGACTCTATTTCATCTCTGCTCACGAACAACCTGATCGTCATTTCAA 356 Query 357 GAATTGGTCTGCGCTTTACACCGTGGAGCTCAACAGCGCA-AAGAGAGAAGTTACACGTG 415 |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| Sbjct 357 GAATTGGTCTGCGCTTTACACCGTGGAGCTCAACGGCG-AGGAGAGAGAAGTTACACGTG 415 Query 416 TCACTCCACCAGACACCGCCGACTTT-AGTCCGGCGGTTTCTCAATCTGGAGATTTCTTA 474 |||||||| |||||||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 416 TCACTCCATTAGACACCGCCGA-TTTCAGCCCGGCGGTTTCTCAATCTGGAGATTTCTTA 474 Query 475 GCCGTTGCTTCTTATGGAACTCGCTCTTGGGGTGGTGAGTTTCACGAGATCAACACTGAT 534 ||||| || || |||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 475 GCCGTCGCGTCATATGGATCTCGCTCTTGGGGCGGTGAGTTTCACGAGATCAACACTGAT 534 Query 535 ATTACTGTTTTCAAAGCATCAAAACCAGAGACAAGAGTGGTTATCTGCGAGCGTGGTGGA 594 ||||||||||| |||||||| ||||||||||||||||||| || |||||||||||||| Sbjct 535 ATTACTGTTTTTAAAGCATCTGAACCAGAGACAAGAGTGGTGATTTGCGAGCGTGGTGGT 594 Query 595 TGGCCGACTTGGTCCGGCGATTCAACTGTTTTCTTCCACCACCAAGCAGACGACGGTTGG 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TGGCCGACTTGGTCCGGCGATTCAACTGTTTTCTTCCACCACCAAGCAGACGACGGTTGG 654 Query 655 TGGAGCATCTTCCGGGTAGATATACCGGAGAATTTCACGGAATATACCGATTTCCCAATC 714 |||||||| ||||||||||||||||||||||| |||| || || ||| |||||| ||| Sbjct 655 TGGAGCATTTTCCGGGTAGATATACCGGAGAACTTCAAAAAAAATTCCGGTTTCCCGATC 714 Query 715 ACACCAATCCGAGTCACTCCATCTGGACTCCATTGCTTCACTCCTGCAGCTTTCCGCGAC 774 ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| Sbjct 715 ACACCGATCCGAGTCACTCCATCAGGACTCCATTGTTTCACTCCTGCAGCTTTCCACGAC 774 Query 775 GGGAAACGAATCGCCTTAGCAACTCGCCGTCGCGGCGTCAACCACCGTCACATCGAGATT 834 || ||| |||||||| | |||||||||||||||||||| |||||||| |||||||||||| Sbjct 775 GGAAAAAGAATCGCCGTCGCAACTCGCCGTCGCGGCGTTAACCACCGCCACATCGAGATT 834 Query 835 TACGACCTTGAAAACACAACGTTTCAGCCGGTGACTGAGTCACTCAATCCGAGTTTCCAC 894 ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 835 TACGACCTTGACCACAAAACGTTTCAGCCGGTGACTGAGCCACTCAATCCGAGTTTCCAC 894 Query 895 CATTACAACCCTTTCGTGTCTCCAGACTCCGAGTTCCTCGGCTACCACCGATTCAGAGGC 954 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 895 CATTACAACCCCTTCGTATCTCCAGATTCCGAGTTCCTCGGCTACCACCGATTCAGAGGC 954 Query 955 GAGTCAACTCAAGGCGAGTCAATCGTACCTAACATCGAATCCATCGTTTCACCAATCAAA 1014 ||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct 955 GAGTCGCCTCAGGGCGAGTCAATCGTTCCCAACATCGAGTCCATCGTTTCACCAATCAAA 1014 Query 1015 ACCCTCCGATTACTAAGAATCAACGGATCGTTTCCATCATCATCTCCCAACGGTGATCTA 1074 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 ACCCTCCGTTTACTCAGAATCAACGGATCGTTTCCATCATCATCTCCCAACGGTGATCTA 1074 Query 1075 ATCGCATTGAACTCCGATTTCGACATCAACGGTGGAATCAAAGTATCTAAATCCGACGGT 1134 |||||| | || ||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1075 ATCGCACTAAATTCCGATTTCGACATCAACGGTGGTATCAAAGTAGCTAAATCCGACGGT 1134 Query 1135 TCAAAACGATGGACGTTGATCAAAGACCGTACAGCTTTCTACAATTCATGGAGTCCAACA 1194 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 TCAAAACGATGGACGTTGATCAAAGACCGTACAGCTTTCTACAATTCATGGAGTCCAACG 1194 Query 1195 GAGCGTCATGTAATCTACACATCTCTAGGTCCAATCTTCTC-TCCGGCGAGAATCGCGGT 1253 |||||||||||||||||||||||||| ||||| |||||| | ||||||| ||||||| || Sbjct 1195 GAGCGTCATGTAATCTACACATCTCTCGGTCCGATCTTC-CGTCCGGCGGGAATCGCCGT 1253 Query 1254 TCAGATAGCTCGAATCAAGTTCGATCCATCAGATCTCACCGCTGATAAAGAAGATCTTCC 1313 ||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||| Sbjct 1254 TCAAATAGCTCGAATTAAGTTCGATCCATCAGATCTCATCGCCGATAAAGAAGAGCTTCC 1313 Query 1314 ATGTGATGTGAAGATTCTCACTCTAGAGAACACTGGGAATAACGCTTTTCCGTCTTGCTC 1373 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 TTGTGATGTGAAGATTCTCACTCTAGAGAACACTGGGAATAACGCTTTTCCGTCTTGCTC 1373 Query 1374 TCCGGACGGTAAATCAATCGTGTTCCGATCTGGTAGATCAGGTCATAAAAATCTCTACAT 1433 ||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 1374 TCCCGACGGCAAATCAATCGTGTTCCGATCTGGTAGATCTGGGCATAAGAATCTCTACAT 1433 Query 1434 TGTAGACGCCGTTAACGGAGAATCTAACGGCGGTGGAATACGACGGTTAACGGATGGGCC 1493 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || || Sbjct 1434 TGTAGACGCTGTTAACGGAGAATCTAACGGCGGTGGAATAAGACGGTTAACGGAAGGACC 1493 Query 1494 ATGGATTGACACTATGCCTTGCTGGTCTCCGAAAGGAGATCTCATCGGATTCTCATCTAA 1553 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 ATGGATCGATACTATGCCTTGCTGGTCTCCGAAAGGAGATCTCATCGGATTCTCATCTAA 1553 Query 1554 TCGTCATAATCCAGAGAACA-CG-GCCGTGTTCGGTGCTTACGTGGTGAGACCTGACGGT 1611 || || ||||||| ||||| || | ||| | |||||||||||||||||||||||||||| Sbjct 1554 CCGACACAATCCAGCGAACATCGAGGCGT-T-CGGTGCTTACGTGGTGAGACCTGACGGT 1611 Query 1612 ACTGGTTTGAGGAGGATTCAAATTTCGGGACCGGAAGGGTCTGAGGAAGCGGCGAGGGAG 1671 ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 1612 ACTGGATTGAGGAGGATTCTAATTTCGGGACCGGAAGGGTCGGAGGAAGCGGCGAGGGAG 1671 Query 1672 AGAGTTAATCATGTGAGTTTCAATAAAGATGGTGATTGGCTT-GTTTTCGCGGCGAATTT 1730 |||||||||||||||||||||||||| |||||||||||| || |||||| |||||||| | Sbjct 1672 AGAGTTAATCATGTGAGTTTCAATAAGGATGGTGATTGG-TTAGTTTTCACGGCGAATCT 1730 Query 1731 GAGC-GGAGTAACGGCGGAGCCGGTGACGATGCCGAATCAGTTTCAGCCTTATGGGGATT 1789 | ||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||| Sbjct 1731 CT-CTGGAATAACGGCGGAGCCGGTGGCGATGCCGAATCAGTTTCAGCCGTATGGAGATT 1789 Query 1790 TGTACGTTGTGAAATTAGACGGAACGGGATTGAGGAGGCTGACGTGGAATGGGTATGAAG 1849 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1790 TGTACGTTGTGAAATTGGATGGAACGGGATTGAGGAGGCTGACGTGGAATGGGTATGAAG 1849 Query 1850 ATGGGACTCCTACGTGGCATACTGCTGATGAATTGGATTTGAGTCAGTTGAATTTGAACG 1909 |||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 1850 ATGGGACTCCCACGTGGCATACTGCTGATGAATTGGATTTGAGTCGGTTGTGTTTGAACG 1909 Query 1910 GTCAAGATGGTGACAAGCTTGAAGGTCAGTTTGAGGAGCCGTTGTGGATTTCTTGCGATA 1969 |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1910 GTCAAGATGGAGACAAACTTGATGGTCAGTTTGAGGAGCCGTTGTGGATTTCTTGCGACA 1969 Query 1970 TCTGAATGCGATTT 1983 |||||||||||||| Sbjct 1970 TCTGAATGCGATTT 1983 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77894551025 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5