BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G01883.1
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327611 jgi|Araly1|327611|fgenesh1_pm.C_scaffold_6002831 981 0.0
Ahg951622 jgi|Araly1|951622|scaffold_803509.1 169 5e-41
> Ahg327611 jgi|Araly1|327611|fgenesh1_pm.C_scaffold_6002831
Length=681
Score = 981 bits (531), Expect = 0.0
Identities = 636/685 (93%), Gaps = 14/685 (2%)
Strand=Plus/Plus
Query 95 ATGTCTGCAACGGCAATTCTCTCTGTAAATAACCCTAAAGACTTAGTCACCGGATTTGGT 154
|||||||| ||||| ||||||||||||| ||||||||| | | | ||| ||||||||||
Sbjct 1 ATGTCTGCGACGGCGATTCTCTCTGTAACTAACCCTAACGCCGTCGTCTTCGGATTTGGT 60
Query 155 AATCGGACATTTC-ATTCCCGGAGCAACTTTGCTAAACCCAGTTCGAGATTGTTTCCTTC 213
||||||||| ||| || |||||||||||| ||||||||||||||||||||||| | |
Sbjct 61 AATCGGACA-TTCTGTTGTCGGAGCAACTTTACTAAACCCAGTTCGAGATTGTTT-C--C 116
Query 214 TTCTTCTTCTCCGATGAAGCCTTTGACCCTTGCTTCTAGATTCTCTCCTTTGATTTCAAC 273
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 117 TTCTTCTTCTCCGATGAAGCCTTTGACTCTTGATTCTAGATTCTCTCCTTTGATTTCAAC 176
Query 274 AAATAGATCCTTTAAATCTTCAGTCTTCAGGAGATTTGATACTCTCATGGAGTGGCAAGA 333
|||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 177 AAATAGGTCCTTGAAATCTTCAGTATTCAGGAGATTTAATACTCTCATGGAGTGGCAAGA 236
Query 334 ATGCAAAGTAAAGATGAAGGTAGAAGTGCCTGTATCAGTTGCTTATGGACTCTACTCGGA 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATGCAAAGTAAAGATGAAGGTAGAAGTGCCTGTATCAGTTGCTTATGGACTCTACTCGGA 296
Query 394 ACGAGAATCAATTCCTAAATGGATGACATTTATTTCATCCGTTAAGGTATTGAAGGACAA 453
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 297 ACGTGAATCAATTCCTAAATGGATGACATTCATTTCATCTGTTAAGGTATTGAAGGACAA 356
Query 454 ACCCGATTTATCTCGATGGACCTTGAAATATAAAGCATTTGGTCAGAATCTTGAGTACGC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACCCGATTTATCTCGATGGACCTTGAAATATAAAGCATTTGGTCAGAATCTTGAGTACGC 416
Query 514 TTGGCTTGCTAAGAACTTGCAG-C-----C---TCTCCCAAACCAAAAAATACACTGGAT 564
|||||||||||||||||||||| | | |||||| || || |||||||| |||||
Sbjct 417 TTGGCTTGCTAAGAACTTGCAGGCAATTTCACCTCTCCCGAATCAGAAAATACATTGGAT 476
Query 565 TTCTCTTGAAGGGCTTCCTAACAAGGGCACTGTCCGGTTTTTCCCGCTAGGACCTTCATC 624
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 TTCTCTAGAAGGCCTTCCTAACAAGGGCACTGTCCGCTTTTTCCCGCTAGGACCTTCATC 536
Query 625 ATGTGACGTAGAACTAACCTTTGCATATGAAGTTCCACTGCTACTTATACCATTTGCAGC 684
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 ATGTGAAGTAGAACTAACCTTTGCATATGAAGTTCCCCTGCTACTTATACCATTTGCAGC 596
Query 685 AGCGCTTCAACCGCTAATGCAAGGATTGATCAAGAACAGTTTGGAGCAATTTGCAGAGAT 744
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 597 GGCGCTTCAACCGCTCATGCAAGGATTGATCAAGAATAGTTTGGAGCAATTTGCAGAGAT 656
Query 745 AGCAAAAAGCACAAAGACCACTTAG 769
||||||||||||||||||||||||
Sbjct 657 TGCAAAAAGCACAAAGACCACTTAG 681
> Ahg951622 jgi|Araly1|951622|scaffold_803509.1
Length=274
Score = 169 bits (91), Expect = 5e-41
Identities = 97/100 (97%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 340 AGTAAAGATGAAGGTAGAAGTGCCTGTATCAGTTGCTTATGGACTCTACTCGGAACGAGA 399
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 14 AGTAAAGATGAAGGTAGAAGTGCATGTATCAGTAGCTTATGGACTCTACTCGGAACGAGA 73
Query 400 ATCAATTCCTAAATGGATGACATTTATTTCATCCGTTAAG 439
|||||||||||||||||||||||| |||||||||||||||
Sbjct 74 ATCAATTCCTAAATGGATGACATTCATTTCATCCGTTAAG 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5