BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G01935.1 Length=952 Score E Sequences producing significant alignments: (Bits) Value Ahg490383 jgi|Araly1|490383|fgenesh2_kg.6__3517__AT4G01935.1 1424 0.0 > Ahg490383 jgi|Araly1|490383|fgenesh2_kg.6__3517__AT4G01935.1 Length=933 Score = 1424 bits (771), Expect = 0.0 Identities = 882/936 (94%), Gaps = 6/936 (1%) Strand=Plus/Plus Query 20 tttttttGTATGGATAAAATTGGAAAATGTTTGTCTTAGCGATATCTTCTCCTTCAACGA 79 ||||||||||||||| | ||||||| |||||||||||| ||||||||||||||||||| Sbjct 1 TTTTTTTGTATGGATGAGATTGGAAGATGTTTGTCTTAACGATATCTTCTCCTTCAACTC 60 Query 80 CTCTCATCAAACCATTAAAACGAAATGGGCCAAACCGGTCACCGGTTCGAAAAATCCTTT 139 ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| | Sbjct 61 CTCTCATCAGACCACTAAAACGAAACGGGCCAAACCGGTCACCGGTTCGAAAAATCCTCT 120 Query 140 GCCTGAGCCAGAGGAAGCAGAGCAAAACCAGTACCGGCAAATCTTGGATCGTCCCAGTAA 199 || |||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| Sbjct 121 GCATGAGCCAGAGGAGGCAGAGCAAAACCGGTACCGGAAAATCTTGGATAGTCCCAGTAA 180 Query 200 GTCTCTCTCTTTTTGGTTCAGGCTTCGTCTTGGGTCCTCTTCTCGATGGTATCCACTCAC 259 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 GTCTCTCTCTTTTTGGTTCAGGCTTCGTCTTGGGTCCTCTTCTCGATGGTCTCCACTCAC 240 Query 260 GTGTCGATCTCGTGGTTTACCAAAACGGAGCTTTTCAAATCGGTCCCCTTCATACAAACA 319 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTGTTGATCTCGTGGTTTACCAAAACGGAGCTTTTCAAATCGGTCCCCTTCATACAAACA 300 Query 320 TCTGGGTACCGTTCTTGCTTGGCTTATTTTACTGTACAGTAGGTTTACTACAACTCCTAT 379 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 301 TCTGGGTCCCGTTCTTGCTTGGCTTATTTTATTGTACAGTAGGTTTACTACAACTCCTAT 360 Query 380 TGGATGAGACAACCTCT-GCAAGTCCTCCACGTGGTAGCCTGGACAAAACCGTAATTTCA 438 ||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |||||||| Sbjct 361 TGGATGAGACAACCTCTATAAAG-CCTCCACGTGGCAGCTTGGACAAAACCATAATTTCA 419 Query 439 CTCTTAGCATTGATGTTCTTCTTAGAGCTAAGTGCTGAAATGTACAAAGCTGGAGTTTCA 498 ||||||||| || || | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 420 CTCTTAGCACTGCTGGTGTTCTTAGAGTTAAGTGCTGAAATGTACAAAGCTGGAGTTTCA 479 Query 499 GACAACATAGAAGCTTACATTCTATTTGCCTTAGCAGAATTTATTTGGTTCTCTTTGGAT 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GACAACATAGAAGCTTACATTCTATTTGCCTTAGCAGAATTTATTTGGTTCTCTTTGGAT 539 Query 559 AGAACTTGGATTTGCTTCACCATTGCCACTCTCCTTGGTGTCGCCTGTCCTTTAGCCGAA 618 ||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 540 AGAACTTGGCTTGGCTTCACCATTGCCACTCTCCTCGGTGTTGCCTGTCCTTTAGCCGAA 599 Query 619 ATCCCCATCATGCAATTCTTCCATCTGTGGTACTATCCAGAAGCAAACATAGAAATCTTT 678 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 600 ATCCCCATCATGCAATTCTTCCATCTGTGGTACTATCCAGAAGCTAACATAGAGATCTTT 659 Query 679 GGCCAGGGACTGGTTACGTGGACAACAACTTGCTACTTTGTCTACACACCGTTCTTGATC 738 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GGCCAGGGATTGGTTACTTGGACAACAACTTGCTACTTTGTCTACACACCGTTCTTGATC 719 Query 739 AACCTGGCAAGATGGCTAAGGACAGTTATGGAGAGGACGACTATTGAAGTGGACATTAGC 798 ||||| ||||||||||| ||||||||||||||||||||||||| ||| || ||||||||| Sbjct 720 AACCTAGCAAGATGGCTCAGGACAGTTATGGAGAGGACGACTACTGATGTAGACATTAGC 779 Query 799 TCAAACAAAGAGCAATAATGTTTTTACATAATATAGTG-GCTTTCTTCATGCTTTCTAGC 857 |||| | ||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 780 TCAAGCGAAGAGCAATAATGTTTTTACATAATATAGTGAG-TTTCTTCATGCTTTCTAGC 838 Query 858 TTGTAAAGGTTACATTAGATATGTCCTTAAACTTTTCTTTAATCGCTGC-CTGTATTCCC 916 |||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||| Sbjct 839 TTGTAAAGGTTACATTAGATATGTCCTTGAACTTTTCTTTAATAGCTGCTC-GTATTCCC 897 Query 917 ATTCCAATCGACTCCGGTCCAACATATTTTACAACG 952 ||||||||||| || ||||||||||||||||||||| Sbjct 898 ATTCCAATCGATTCTGGTCCAACATATTTTACAACG 933 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35339944059 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5