BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02050.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327595 jgi|Araly1|327595|fgenesh1_pm.C_scaffold_6002815 2416 0.0
> Ahg327595 jgi|Araly1|327595|fgenesh1_pm.C_scaffold_6002815
Length=1548
Score = 2416 bits (1308), Expect = 0.0
Identities = 1460/1535 (95%), Gaps = 3/1535 (0%)
Strand=Plus/Plus
Query 198 ATGGCAGGAGGGTCGTTTGGTCCGACCGGTGTGGCTAAGGAGAGAGCAGAACAATACCAA 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGGAGGGTCGTTTGGTCCGACCGGTGTGGCTAAGGAGAGAGCAGAACAATACCAA 60
Query 258 GGGAAAGTCACTAGTTATGTTATAATCGCTTGCCTTGTTGCAGCTATTGGTGGATCCATC 317
|||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 GGGAAAGTTACTAGTTATGTCATAATTGCTTGCCTTGTTGCAGCCATTGGTGGATCCATC 120
Query 318 TTTGGATATGACATTGGAATCTCAGGAGGAGTTACATCGATGGATGAGTTTCTTGAGGAG 377
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TTTGGATATGACATTGGAGTCTCAGGAGGAGTTACGTCGATGGATGAGTTTCTTGAGGAG 180
Query 378 TTTTTCCACACGGTTTATGAGAAGAAGAAGCAAGCTCATGAAAGTAATTACTGCAAATAT 437
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TTTTTCCATACGGTTTATGAGAAGAAGAAGCATGCTCATGAAAGTAATTACTGCAAATAT 240
Query 438 GATAATCAAGGCTTAGCTGCTTTCACTTCTTCACTCTACTTAGCTGGTTTGGTTTCGACT 497
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GATAATCAAGGATTAGCTGCTTTTACTTCTTCACTCTACTTAGCTGGTTTGGTTTCGACT 300
Query 498 CTCGTGGCTTCACCCATCACTAGGAACTACGGTAGGCGTGCGAGTATTGTTTGTGGTGGA 557
||||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 301 CTCGTGGCTTCACCCGTCACTAGGAACTATGGAAGGCGTGCAAGTATTGTTTGTGGTGGA 360
Query 558 ATCAGCTTTCTTATTGGATCTGGTTTGAATGCTGGAGCTGTGAACTTAGCTATGCTTCTT 617
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 361 ATCAGCTTTCTTATTGGATCTGCTTTGAATGCTGGAGCTGTGAACCTAGCTATGCTTCTT 420
Query 618 GCCGGACGGATCATGCTTGGTGTTGGTATTGGATTTGGAAATCAGGCGGTTCCTTTGTAT 677
|| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 421 GCGGGACGGATCATGCTCGGTGTTGGCATTGGATTTGGAAATCAGGCAGTTCCTTTGTAT 480
Query 678 TTATCAGAAGTGGCACCAACTCATCTACGAGGTGGTTTAAACATGATGTTTCAGCTAGCT 737
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 481 TTATCAGAAGTGGCACCAACTCATCTGCGAGGCGGTTTAAACATGATGTTTCAGTTAGCT 540
Query 738 ACAACTATCGGGATCTTTACAGCGAACATGGTTAATTACGGTACTCAACAGCTTAAGCCT 797
|||||||| ||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 541 ACAACTATTGGGATCTTTACGGCGAATATGGTCAATTATGGTACTCAACAACTTAAGCCT 600
Query 798 TGGGGATGGAGACTCTCTCTTGGTTTAGCTGCTTTTCCAGCTCTGCTTATGACGCTTGGC 857
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 TGGGGATGGAGACTCTCTCTTGGTTTGGCTGCTTTTCCAGCTCTGCTTATGACGCTTGGC 660
Query 858 GGGTATTTCTTACCCGAGACACCAAACAGTTTGGTCGAAAGAGGATTAACAGAGAGAGGT 917
||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||||
Sbjct 661 GGGTATTTCTTACCCGAAACTCCCAACAGTTTGGTCGAAAGAGGATTGACAGAGAGAGGT 720
Query 918 CGACGAGTCTTAGTGAAGCTAAGAGGAACAGAAAACGTCAACGCCGAGCTTCAAGACATG 977
||||| ||||||||||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct 721 CGACGTGTCTTAGTGAAACTAAGAGGGACGGAAAACGTCAATGCCGAGCTTCAAGACATG 780
Query 978 GTAGATGCGAGTGAGCTTGCGAATTCCATCAAACATCCATTCAGAAACATCTTGCAGAAA 1037
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 781 GTAGATGCGAGTGAGCTTGCGAATTCAATCAAACATCCATTCAGAAACATCCTGCAGAAA 840
Query 1038 CGACACAGGCCTCAGCTAGTTATGGCTATTTGCATGCCAATGTTTCAGATACTCACAGGG 1097
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 841 CGACATAGGCCTCAGCTAGTTATGGCGATTTGCATGCCAATGTTTCAGATCCTCACAGGG 900
Query 1098 ATAAACTCCATTCTCTTCTACGCACCTGTTCTGTTCCAGACAATGGGGTTTGGAGGAAAC 1157
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 901 ATAAACTCAATTCTCTTCTACGCGCCTGTTCTGTTCCAGACAATGGGATTTGGAGGAAAC 960
Query 1158 GCATCTCTCTATTCATCAGCTTTAACAGGAGCTGTTCTTGTCCTATCAACATTTATTTCC 1217
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCATCTCTCTACTCATCAGCTTTAACAGGAGCTGTTCTTGTCCTATCAACATTTATTTCC 1020
Query 1218 ATAGGATTAGTAGACAGATTGGGACGAAGAGCTCTTCTCATAACTGGAGGAATACAAATG 1277
||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1021 ATAGGATTAGTGGACAGATTGGGAAGAAGAGCTCTTCTCATCACTGGAGGAATACAAATG 1080
Query 1278 ATAATCTGTCAAGTCATAGTAGCAGTGATCTTAGGAGTGAAATTTGGAGACAACCAAGAG 1337
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 ATAATCTGTCAAGTCATAGTTGCAGTGATCTTGGGAGTGAAATTTGGAGACAACCAAGAG 1140
Query 1338 CTATCAAAAGGGTACTCAGTGATCGTAGTCATCTTCATCTGCCTCTTTGTTGTAGCGTTC 1397
|||||||||||||||||||| ||||||||| ||||||| |||||||||||| |||| |||
Sbjct 1141 CTATCAAAAGGGTACTCAGTCATCGTAGTCGTCTTCATTTGCCTCTTTGTTATAGCATTC 1200
Query 1398 GGATGGTCATGGGGTCCTCTAGGTTGGACCATACCTAGCGAAATCTTTCCGTTAGAGACT 1457
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 1201 GGATGGTCATGGGGTCCTCTCGGTTGGACCATACCGAGCGAAATCTTTCCGTTAGAGATT 1260
Query 1458 CGTTCAGCGGGGCAGAGTATCACAGTAGCTGTAAATCTCCTCTTCACTTTCATCATAGCT 1517
||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct 1261 CGTTCAGCGGGGCAGAGTATCACGGTAGCCGTCAACCTCCTCTTCACTTTCATCATAGCT 1320
Query 1518 CAAGCTTTCCTTGGTCTCCTCTGTGCATTCAAGTTTGGAATCTTCCTCTTCTTTGCTGGT 1577
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1321 CAAGCTTTCCTCGGTCTCCTCTGCGCGTTCAAGTTTGGAATCTTCCTCTTCTTTGCTGGT 1380
Query 1578 TGGGTGACAGTAATGACTATCTTTGTGTATTTCCTGTTGCCTGAAACCAAAGGAGTTCCA 1637
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1381 TGGGTCACAGTAATGACCATCTTTGTCTATTTCCTGTTGCCTGAAACCAAAGGAGTTCCA 1440
Query 1638 ATAGAAGAGATGACACTCTTATGGAGTAAACATTGGTTCTGGAAAAAAGTATTACCTGAT 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 ATAGAAGAGATGACACTCTTATGGAGTAAACATTGGTTCTGGAAAAAAGTATTACCTG-- 1498
Query 1698 GCAACAAATCTTGAAGATGAGAGCAAGAATGTATC 1732
|||||||||||||||||||||||||||||| |||
Sbjct 1499 -CAACAAATCTTGAAGATGAGAGCAAGAATGAATC 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5