BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02080.1 Length=912 Score E Sequences producing significant alignments: (Bits) Value Ahg943533 jgi|Araly1|943533|scaffold_604077.1 952 0.0 Ahg918912 jgi|Araly1|918912|scaffold_100193.1 630 4e-180 > Ahg943533 jgi|Araly1|943533|scaffold_604077.1 Length=622 Score = 952 bits (515), Expect = 0.0 Identities = 583/616 (95%), Gaps = 4/616 (1%) Strand=Plus/Plus Query 86 GGATCTGAGT--T-AGTCATGTTCATGATCGATTGGTTCTATGGCGTTCTCGCTTCGTTA 142 |||||||||| | ||| |||||| || | ||||||||||||||||| |||||||||||| Sbjct 3 GGATCTGAGTAGTGAGTGATGTTCTTGGTAGATTGGTTCTATGGCGTACTCGCTTCGTTA 62 Query 143 GGGTTATGGCAGAAAGAGGCTAAGATCTTGTTTCTGGGACTCGATAATGCTGGTAAAACC 202 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 63 GGGTTATGGCAGAAAGAGGCTAAGATCTTGTTTCTTGGACTCGATAATGCTGGTAAAACC 122 Query 203 ACTCTGCTTCACATGTTGAAAGACGAGAGATTGGTACAGCATCAGCCTACGCAGCATCCA 262 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 123 ACTTTGCTTCACATGTTGAAAGACGAGAGATTGGTACAGCATCAGCCAACGCAGCATCCA 182 Query 263 ACTTCTGAAGAACTCAGCATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCAC 322 || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 ACGTCTGAAGAACTTAGCATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCAT 242 Query 323 CAGATTGCTCGCAGGGTCTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTA 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 CAGATTGCTCGCAGGGTCTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTA 302 Query 383 GTTGATGCTTACGACAAAGAGAGATTTGCAGAATCAAAAAAGGAACTTGATGCACTTCTC 442 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 303 GTAGATGCTTATGACAAAGAGAGATTTGCAGAATCAAAAAAGGAACTTGACGCACTTCTC 362 Query 443 TCAGACGAATCCCTAGCCAGCGTTCCATTCCTCATTCTAGGAAACAAGATAGACATACCG 502 ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| Sbjct 363 TCAGACGAATCCCTAGCCAACGTCCCATTCCTCATTCTAGGAAACAAAATAGACATACCT 422 Query 503 TATGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCACTACAGGA 562 || ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 423 TACGCTGCATCAGAAGACGAGCTCCGTTACCATCTCGGACTCTCCAACTTCACAACAGGA 482 Query 563 AAGGGTAAAGTGAATCTAACGGATTCGAACGTTAGGCCATTGGAGGTTTTCATGTGCAGC 622 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 483 AAGGGTAAAGTGAATCTAACGGATTCGAACGTAAGGCCATTGGAGGTTTTCATGTGCAGC 542 Query 623 ATTGTCAGGAAAATGGGTTACGGAGAAGGTTTCAAATGGGTTTCTCAATACATCAAGTAA 682 |||||||||||||||||||| || ||||| ||||||||| |||||||||||||||||||| Sbjct 543 ATTGTCAGGAAAATGGGTTATGGCGAAGGCTTCAAATGGCTTTCTCAATACATCAAGTAA 602 Query 683 GACAAACACACGCTGT 698 ||| | |||| ||||| Sbjct 603 GACGA-CACAAGCTGT 617 > Ahg918912 jgi|Araly1|918912|scaffold_100193.1 Length=622 Score = 630 bits (341), Expect = 4e-180 Identities = 503/582 (86%), Gaps = 8/582 (1%) Strand=Plus/Plus Query 101 ATGTTCATGATCGATTGGTTCTATGGCGTTCTCGCTTCGTTAGGGTTATGGCAGAAAGAG 160 |||||| || | ||||||||||| ||||| ||||||||| |||| |||||||||||||| Sbjct 21 ATGTTCTTGGTAGATTGGTTCTACGGCGTGCTCGCTTCGCTAGGTTTATGGCAGAAAGAA 80 Query 161 GCTAAGATCTTGTTTCTGGGACTCGATAATGCTGGTAAAACCA-CTCTGCTTCACATGTT 219 || |||||||||||||| || ||||||||||| |||||||||| || ||||||||||||| Sbjct 81 GCCAAGATCTTGTTTCTAGGTCTCGATAATGCCGGTAAAACCACCT-TGCTTCACATGTT 139 Query 220 GAAAGACGAGAGATTGGTACAGCATCAGCCTACGCAGCATCCAACTTCTGAAGAACTCAG 279 |||||||||||||||||| |||||||| || || ||||||||||| |||||||| || || Sbjct 140 GAAAGACGAGAGATTGGTGCAGCATCAACCAACTCAGCATCCAACCTCTGAAGAGCTTAG 199 Query 280 CATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCACCAGATTGCTCGCAGGGT 339 |||||| |||||||| || ||||||||||| ||||| ||||| || ||||| || || || Sbjct 200 CATTGGCAAAATCAAATTCAAGGCTTTTGACTTGGGCGGTCATCAAATTGCACGAAGAGT 259 Query 340 CTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTAGTTGATGCTTACGACAA 399 ||||| || |||||||||||||| || || ||||||||| |||| |||||||| ||||| Sbjct 260 GTGGAAAGACTACTATGCTAAGGTTGATGCGGTGGTCTACTTAGTGGATGCTTATGACAA 319 Query 400 AGAGAGATTTGCAGAATCAAAAAAGGAACTTGATGCACTTCTCTCAGACGAATCCCTAGC 459 |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| Sbjct 320 GGAGAGATTTGCAGAATCAAAAAAGGAGCTTGATGCACTTCTCTCAGATGAATCCTTAGC 379 Query 460 CAGC-GTTCCATTCCTCATTCTAGGAAACAAGATAGACATACCGTATGCTGCATCAGAGG 518 || | || ||||||||||| ||||| ||||| || |||||||| || |||||||| |||| Sbjct 380 CA-CTGTCCCATTCCTCATCCTAGGGAACAAAATCGACATACCTTACGCTGCATCTGAGG 438 Query 519 ACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCACTACAGG-AAAGGGTAAAGTGAAT 577 ||||||| || |||||||| || |||||||| ||||| || || ||||| ||||||||| Sbjct 439 ACGAGCTTCGATACCATCTTGGTCTCTCCAATTTCACAACTGGTAAAGGC-AAAGTGAAT 497 Query 578 CTAACGGATTCGAACGTTAGGCCATTGGAGGT-TTTCATGTGCAGCATTGTCAGGAAAAT 636 ||||| |||||||| || || ||||||||||| ||| |||||||||||||| || ||||| Sbjct 498 CTAACTGATTCGAATGTGAGACCATTGGAGGTGTTT-ATGTGCAGCATTGTTAGAAAAAT 556 Query 637 GGGTTACGGAGAAGGTTTCAAATGGGTTTCTCAATACATCAA 678 ||| || || ||||| ||||| ||| | |||||||||||||| Sbjct 557 GGGATATGGTGAAGGCTTCAAGTGGCTCTCTCAATACATCAA 598 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33815027379 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5