BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02280.1
Length=2917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490342 jgi|Araly1|490342|fgenesh2_kg.6__3476__AT4G02280.1 4196 0.0
Ahg484788 jgi|Araly1|484788|fgenesh2_kg.5__780__AT3G43190.1 525 7e-148
> Ahg490342 jgi|Araly1|490342|fgenesh2_kg.6__3476__AT4G02280.1
Length=2898
Score = 4196 bits (2272), Expect = 0.0
Identities = 2732/2941 (93%), Gaps = 83/2941 (3%)
Strand=Plus/Plus
Query 1 ACATGTACTCTCCTCTAACATAAACACGTCACTTGTAGC--GAAAACAGTATCAAGAAAA 58
||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||
Sbjct 1 ACATGTACTCTCCTCCAACACAAACACGTCACTTGTAGCAAAAAAACAGTAACAAGAAAC 60
Query 59 AGAGAAGATCAAACACGTCTTCTT-Ttc-tctctctctctTTGTCGCCTAAAATTCCAGA 116
|||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 61 AGAGAAGATCAAACACGTCTTCTTCTTCGTCTCTCTCTCTTTGTCGCATAAAATTCCAGA 120
Query 117 ATCACTCTGCTTTTTACCCTTTTAATCAATGATTTTTCC-TTTTAGTAGCAATCGTTGGT 175
||||||||||||||| || |||||||| |||||||||| ||||| || | ||| | |
Sbjct 121 TTCACTCTGCTTTTTATCC-TTTAATCAGTGATTTTTCCTTTTTATTA-CGATCACT-G- 176
Query 176 GATTCG--AAAAACCAAACTTTTCTCGGACTAGGATTCTAGGGTTTTAGTGATCATCTGA 233
| || |||||| |||||||||| | | | | | | | |||||
Sbjct 177 AAAGCGAAAAAAACAAAACTTTTCT----C-A--A--C-------CT--T--T--TCTGA 214
Query 234 ATATTCATGGCAAACCCTAAGCTCACTAGGGTTCTAAGCACAAGGGATCGCGTGCAAGAC 293
|||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 215 ATATCCATGGCAAACCCTAAGCTCACTAGGATTATAAGCACAAGGGATCGCGTGCAGGAC 274
Query 294 ACGCTTTCCGCTCACCGCAACGAACTCGTTGCTCTTCTCTCCAGGTATGTGGATCAGGGG 353
||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 275 ACGCTCTCTGCTCACCGCAACGAACTCGTCGCTCTTCTCTCCAGATATGTGGATCAGGGA 334
Query 354 AAAGGGATTCTTCAACCACATAACTTAATTGACGAACTCGAATCTGTTATCGGAGACGAT 413
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 335 AAAGGGATTCTTCAGCCACATAACTTAATCGACGAACTCGAATCTGTAATCGGAGACGAT 394
Query 414 GAAAC-AAAGAAGAGTCTCTCTGATGGTCCTTTTGGAGAGATCCTTAAATCAGCAATGGA 472
| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 395 GCAACGAAA-CAGAGTCTCTCTGATGGTCCTTTTGGAGAAATCCTTAAATCAGCAATGGA 453
Query 473 AGCTATAGTTGTACCACCTTTTGTTGCGTTAGCCGTTAGACCAAGACCTGGTGTTTGGGA 532
||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 454 AGCGATAGTTGTGCCACCATTTGTTGCCTTAGCCGTTAGACCAAGACCTGGTGTTTGGGA 513
Query 533 ATATGTTCGTGTTAATGTCTTCGAGCTAAGTGTTGAACAATTAACAGTCTCTGAGTATCT 592
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 514 ATATGTTCGTGTTAATGTCTTCGAGCTAAGTGTTGAACAGTTAACAGTCTCTGAGTATCT 573
Query 593 TCGTTTCAAAGAAGAACTCGTTGATGGACCTAATAGTGACCCTTTTTGTCTTGAGCTTGA 652
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 574 TCGTTTCAAAGAAGAACTCGTTGATGGACCTAATAGTGACCCTTTTCCTCTTGAGCTTGA 633
Query 653 TTTCGAGCCCTTTAACGCAAACGTGCCACGTCCTTCTCGTTCGTCTTCGATTGGTAATGG 712
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 634 TTTCGAGCCCTTTAACGCAAACGTGCCACGTCCTTCTCGTTCGTCTTCCATTGGTAATGG 693
Query 713 AGTTCAGTTTCTGAATCGTCACTTGTCTTCTGTTATGTTCCGTAACAAAGATTGCTTGGA 772
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 694 AGTTCAGTTTCTGAATCGTCACTTGTCTTCTGTAATGTTCCGTAACAAAGATTGCTTGGA 753
Query 773 GCCTCTGCTTGATTTCCTTAGAGTTCATAAGTACAAAGGTCATCCGTTGATGTTGAATGA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 GCCTCTGCTTGATTTCCTTAGAGTTCATAAGTACAAAGGTCATCCGTTGATGTTGAATGA 813
Query 833 TCGGATTCAAAGCATATCTAGGCTTCAAATCCAGCTTAGTAAAGCAGAAGATCATATCTC 892
||||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||
Sbjct 814 TCGGATTCAAAGCATATCTAGGCTTGAAAACCAACTTAATAAAGCAGAAGATCATATCTC 873
Query 893 TAAGCTTTCACAAGAAACTCCGTTCTCGGAATTCGAATACGCG-TTGCAAGGAATGGGTT 951
||||||||||||||||||||| ||||||||||||||||| | | || |||||||||||||
Sbjct 874 TAAGCTTTCACAAGAAACTCCATTCTCGGAATTCGAATATGTGCTT-CAAGGAATGGGTT 932
Query 952 TTGAGAAAGGATGGGGAGATACCGCAGGGAGAGTTCTTGAAATGATGCATCTTCTCTCTG 1011
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 933 TTGAGAAAGGATGGGGAGATACCGCAGGGCGAGTTCTTGAAATGATGCATCTTCTCTCTG 992
Query 1012 ATATTCTTCAAGCTCCTGATCCTTCGTCCTTGGAGAAGTTTCTTGGGATGGTACCAATGG 1071
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 993 ATATTCTTCAAGCTCCTGATCCTTCGACCTTGGAGAAGTTTCTCGGGATGGTACCGATGG 1052
Query 1072 TTTTCAACGTTGTGATCTTATCTCCACATGGATATTTCGGGCAAGCCAATGTTTTAGGCT 1131
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1053 TTTTCAACGTTGTGATCTTATCTCCACATGGATATTTTGGGCAAGCCAATGTCTTAGGAT 1112
Query 1132 TACCTGACACTGGTGGACAAGTTGTCTATATTCTTGACCAAGTCCGTGCCCTTGAGACTG 1191
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1113 TACCTGACACTGGTGGACAAGTTGTCTATATTCTAGACCAAGTCCGTGCCCTTGAGACCG 1172
Query 1192 AAATGCTGTTGAGAATAAAGAGACAGGGGTTGGATATATCACCTAGTATTCTTATTGTAA 1251
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1173 AAATGCTGTTGAGAATAAAGAGACAGGGGTTGGATATAACACCTAGGATTCTTATTGTAA 1232
Query 1252 CTAGGTTGATACCGGATGCTAAAGGAACTACGTGTAACCAGCGGTTAGAGAGAGTCAGCG 1311
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1233 CTAGGTTGATACCGGATGCTAAAGGAACCACGTGTAACCAGCGGTTAGAGAGAGTCAGCG 1292
Query 1312 GAACAGAGCATACTCATATTCTCCGGGTTCCTTTTAGGTCTGAGAAAGGAATCCTCCGTA 1371
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1293 GAACAGAGCATACTCATATTCTCCGGGTTCCTTTTAGGTCCGATAAAGGGATCCTCCGTA 1352
Query 1372 AGTGGATTTCAAGATTCGACGTATGGCCTTATCTAGAGAACTATGCTCAGGATGCAGCAA 1431
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1353 AGTGGATTTCAAGATTCGACGTATGGCCTTATCTGGAGAACTATGCTCAAGATGCAGCAA 1412
Query 1432 GCGAGATTGTCGGTGAATTGCAAGGCGTACCGGACTTTATCATCGGTAACTATAGTGACG 1491
|||||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 1413 GCGAGATTGTAGGTGAATTACAAGGTGTACCCGATTTTATCATCGGTAACTATAGTGACG 1472
Query 1492 GAAACCTTGTTGCATCGTTAATGGCACATAGAATGGGTGTTACACAATGTACTATTGCAC 1551
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1473 GAAACCTTGTTGCATCGTTAATGGCACATAGAATGGGTGTTACACAGTGTACTATTGCAC 1532
Query 1552 ATGCTTTGGAGAAAACCAAGTATCCAGATTCAGACATTTACTGGAAAGACTTCGACAACA 1611
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1533 ATGCTTTGGAGAAAACCAAGTATCCAGATTCAGACATTTACTGGAAAGATTTCGACAACA 1592
Query 1612 AGTATCATTTCTCTTGTCAATTCACAGCTGATCTTATCGCAATGAACAACGCAGATTTCA 1671
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1593 AGTATCATTTCTCTTGTCAATTCACAGCTGATCTAATCGCAATGAACAACGCAGATTTCA 1652
Query 1672 TCATCACAAGCACTTACCAAGAAATCGCAGGAACGAAGAACACCGTCGGTCAATATGAAA 1731
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1653 TCATCACAAGCACTTACCAAGAAATCGCGGGAACGAAGAACACGGTCGGTCAATATGAAA 1712
Query 1732 GCCACGGGGCTTTTACGCTCCCGGGACTATATAGAGTAGTACACGGCATCGATGTGTTTG 1791
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1713 GCCATGGGGCTTTTACGCTCCCGGGACTATACAGAGTAGTACACGGCATCGATGTGTTTG 1772
Query 1792 ATCCGAAGTTCAACATAGTCTCGCCCGGTGCAGACATGACCATATATTTCCCGTATTCCG 1851
|||||||||||||||||||||||||||| | ||||||| ||||||||||||||| ||| |
Sbjct 1773 ATCCGAAGTTCAACATAGTCTCGCCCGGCGTAGACATGGCCATATATTTCCCGTTTTCTG 1832
Query 1852 AAGAAACTAGGAGACTTACAGCTTTACATGGTTCAATAGAGGAAATGCTCTATAGCCCTG 1911
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1833 AAGAAACTAAGAGACTTACAGCTTTACATAGTTCAATAGAGGAAATGCTCTATAGCCCTG 1892
Query 1912 ACCAGACTGATGAGCATGTCGGTACACTGAGTGATCGATCAAAGCCAATACTCTTCTCTA 1971
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1893 AGCAGACTGATGAGCATGTCGGTACACTGAGCGATCGGTCAAAGCCAATACTCTTCTCTA 1952
Query 1972 TGGCGAGGCTCGACAAAGTGAAGAACATCTCCGGTTTAGTTGAGATGTATAGTAAGAACA 2031
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1953 TGGCGAGGCTCGACAAAGTGAAGAACATCTCCGGTTTAGTTGAGATGTACAGCAAGAACA 2012
Query 2032 CAAAGTTGAGGGAGCTGGTTAATCTGGTTGTAATAGCTGGTAACATTGATGTGAACAAGT 2091
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2013 CAAAGTTGAGGGAGCTGGTTAATCTGGTTGTAATATCTGGTAACATTGATGTGAACAAGT 2072
Query 2092 CCAAAGATAGAGAAGAAATCGTAGAGATTGAGAAAATGCATAACCTTATGAAGAATTACA 2151
||||||| ||||||||||||| |||||||||||||||||| |||||| |||||| |||||
Sbjct 2073 CCAAAGACAGAGAAGAAATCGCAGAGATTGAGAAAATGCAGAACCTTGTGAAGAGTTACA 2132
Query 2152 AGCTTGATGGACAGTTTCGTTGGATAACTGCTCAGACTAACCGAGCTCGAAATGGTGAGC 2211
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2133 AGCTTGATGGACAGTTTCGTTGGATAACGGCTCAGACAAACCGAGCTCGAAATGGTGAGC 2192
Query 2212 TTTACCGCTACATCGCGGATACAAGAGGTGCTTTTGCTCAGCCT----G-C-----G-T- 2259
||||||| |||||||| ||||||||||||||||||||||||||| | | | |
Sbjct 2193 TTTACCGATACATCGCCGATACAAGAGGTGCTTTTGCTCAGCCTATTAGGCTATTAGCTA 2252
Query 2260 T-----C-T--A--C---GAGGCTTTTGGACTTACGGTAGTGGAAGCGATGACTTGCGGG 2306
| | | | | |||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 2253 TGAAAACCTGCATTCTACGAGGGTTTTGGGCTTACGGTATTGGAAGCGATGACTTGCGGG 2312
Query 2307 CTCCCGACTTTTGCCACTTGTCACGGTGGTCCAGCAGAGATCATCGAGCACGGGCTCTCG 2366
|| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2313 CTTCCGACTTTCGCCACTTGTCA-GGTGGTCCTGCAGAGATCATCGAGCACGGGCTCTCG 2371
Query 2367 GGTTTCCACATCGATCCATACCATCCTGAGCAAGCGGGTAACATAATGGCTGATTTCTTT 2426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2372 GGTTTCCACATCGATCCATACCATCCTGAGCAAGCGGGTAACATAATGGCTGATTTCTTT 2431
Query 2427 GAACGTTGTAAGGAAGATCCAAACCATTGGAAGAAAGTATCAGACGCTGGTCTCCAAAGG 2486
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2432 GAACGTTGTAGGGAAGATCCAAACCATTGGAAGAAAGTATCAGACGCTGGTCTCCAAAGG 2491
Query 2487 ATATACGAAAGGTACACATGGAAGATATACTCGGAGAGATTGATGACACTAGCTGGTGTG 2546
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2492 ATATACGAAAGGTACACATGGAACATATACTCGGAGAGATTGATGACACTAGCTGGTGTG 2551
Query 2547 TATGGTTTCTGGAAATACGTATCGAAATTGGAGCGTCGTGAGACTCGGCGATATCTTGAA 2606
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 2552 TATGGTTTCTGGAAATATGCATCAAAATTGGAGCGTCGTGAGACTCGGCGATATCTTGAA 2611
Query 2607 ATGTTCTACATTCTCAAATTCCGCGACTTGGTGAAAACTGTTCCT-TCAACCGCCGATGA 2665
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 2612 ATGTTCTACATTCTCAAATTCCGCGACTTGGTGAAAACTGTTCCTCT-AACCGCCGACGA 2670
Query 2666 CTGACCCGGTTCAGCGTTGGATGAAGTGTTGGACTGTAAAAAAGAATAAATGATGAGTAA 2725
||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2671 CTGACCCGGTTGGGCGTAGGATGAAGTGTTGGGCTGTAAAAAAGAATAAAAGATGAGTAA 2730
Query 2726 CTTTGGCTATGTACCCTATGT----TGTGT-GTATGTATGAAAGGAAGAATTTGTTCCAT 2780
| ||||||||||| ||||| | ||| || |||||||| |||||| ||||||||||
Sbjct 2731 CCTTGGCTATGTAG--TATGTACCCTATGTTGTGTGTATGAACGGAAGA-TTTGTTCCAT 2787
Query 2781 CTTCCATGGAGTAATTACGAATTTGGTGGTACTTTTGTGTTGTCTCATGTGTGTCTGACT 2840
||||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 2788 -------GGAGTTATTACGAACTTCGTGGTACTTTTGTGTTGTCTCATGTGTGT--GACT 2838
Query 2841 GACATGTTGAAGATTATTCACGTGAAGTTTGTAGCTTATAATAAAAAGTCTTCAATGGAA 2900
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2839 GACATGTTGAAAAT-ATTCACGTGAAGTTTGTAGCTTATAATAAAAAGTCTTCAATGGAA 2897
Query 2901 C 2901
|
Sbjct 2898 C 2898
> Ahg484788 jgi|Araly1|484788|fgenesh2_kg.5__780__AT3G43190.1
Length=2725
Score = 525 bits (284), Expect = 7e-148
Identities = 1279/1744 (73%), Gaps = 129/1744 (7%)
Strand=Plus/Plus
Query 935 GTTGCAAGGAATGGGTTTTGAGAAAGGATGGGGAGATACCGCAGG-GAGAGTTCTTGAAA 993
||| || || || ||| |||||| ||| |||||||| ||||| || | | || ||||| |
Sbjct 819 GTTCCAGGGGATTGGTCTTGAGAGAGGTTGGGGAGACACCGC-GGTGCGTGTACTTGACA 877
Query 994 TGATGCATCTTC-TCTCTGATATTCTTC-AAGCTCCTGATCC-TTCGTC-CTTGGAGAAG 1049
|||| | ||||| ||| ||| ||| || | || ||||| || ||| | ||||| |||
Sbjct 878 TGATTCGTCTTCTTCT-TGACCTTC-TCGAGGCACCTGACCCTTTC-ACTCTTGG-GAA- 932
Query 1050 TTT-CTTGGGATGG-TACCAATGGTTTTCAACGTTGTGATCTTATCTCCACATGGATA-T 1106
||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 933 TTTCCTT-GGAAGGATACCAATGGTTTTCAACGTTGTGATCTTATCTCCACATGGATACT 991
Query 1107 TTCGGGCAAGCCAATGTT-TTAGGCTTACC-TGACACTGGTGGACAAGTTGTCTATATTC 1164
|| | || | |||||| || || ||||| |||||||||||| || ||||| || ||||
Sbjct 992 TT-GCTCAGGATAATGTTCTT-GG-TTACCCTGACACTGGTGGTCAGGTTGTTTACATTC 1048
Query 1165 TTGACCAAGTCCGTGCCCTTGAGACTGAAATGCTGTTGA-GAAT-AAAGAGACAGGGGTT 1222
|||| ||||| ||||| || || || || ||||| | | || ||| | ||| || |
Sbjct 1049 TTGATCAAGTTCGTGCTCTCGAAACAGAGATGCTCCA-ACGCATCAAACA-ACAAGGACT 1106
Query 1223 GGATATATCAC-CT-AGTATTCTTATTGTAACTAGGTTGATACCGGATGCTAA-AGGAAC 1279
| ||||| | || || || ||| | ||| ||||| | || ||||| | ||||||
Sbjct 1107 C-ACC-ATCACTCCGAGAATCCTAATTATCACTCGGTTGCTTCCTGATGC-AGCAGGAAC 1163
Query 1280 TACGTGTAACCAGCGGT-TAGAGAGAGTC-AGCGGAACAGAGCATACTCATATTCTCCGG 1337
|| ||| || || | |||||| ||| | |||| | || || | |||| |||||
Sbjct 1164 CACTTGTGGTCAACG-TCTAGAGAAAGTGTA-CGGATCTCAGTATTGTGATATCCTCCGT 1221
Query 1338 GTTCCTTTTAGGTCTGAGAAAGGAATCCTCCGTAAGTGGATTTCAAGATTCGACGTATGG 1397
|| |||||||| | |||||||||||| | || || ||||| ||||| || || || |||
Sbjct 1222 GTACCTTTTAGAACAGAGAAAGGAATCGTTCGCAAATGGATCTCAAGGTTTGAGGTCTGG 1281
Query 1398 CCTTATCTAGAGAACTATG-CTC-AGGATGCAGCAAGC-GAGATTGTCGG-TGAATTGCA 1453
|| |||||||||| || | | | |||||| ||| || || || ||| ||| || ||
Sbjct 1282 CCGTATCTAGAGA-CTTTTAC-CGAGGATGTTGCA-GCTGAAATC-TCGAATGAGTTACA 1337
Query 1454 AGGCGTA-CCGGACTTTATCATCGGTAACTATAGTGACGGAAACCTTGTTGCATCGTTAA 1512
||| | | || ||| ||||||| || ||||||||||| || || |||||||| || ||
Sbjct 1338 AGG-GAAACCTGACCTTATCATTGGAAACTATAGTGATGGTAATCTTGTTGCCTCTTTGT 1396
Query 1513 TGGCACATAGAA-TGGGTGTTACACAATGTACTATTGCACATGCTTTGGAGAAAACCAAG 1571
| ||||| | || | ||||| || || ||||| ||||| |||||||||||||| || |||
Sbjct 1397 TAGCACACA-AACTTGGTGTCACTCAGTGTACCATTGCTCATGCTTTGGAGAAGACTAAG 1455
Query 1572 TATCCAGATTCAGACATTTACTGGAA-A-GACTTCGACAACAAGTATCATTTCTCTTGTC 1629
|| || ||||| || || |||||||| | | ||| ||| | |||||||| |||||||| |
Sbjct 1456 TACCCGGATTCTGATATCTACTGGAAGAAG-CTT-GACGAGAAGTATCACTTCTCTTGCC 1513
Query 1630 AATTCACAGCTGATCTTATCGCAATGAACAACGCAGATTTCATCATCACAAGCACTTACC 1689
| ||||| |||||||||||||| |||||| || ||||||||||||||||||| |||| ||
Sbjct 1514 AGTTCACTGCTGATCTTATCGCCATGAACCACACAGATTTCATCATCACAAGTACTTTCC 1573
Query 1690 AAGAAATCGCAGGAA-CGAAGAACACCGTCGGTCAATATGAAAGCCACGGGGCTTTTACG 1748
||||||| || |||| | ||| |||| || ||||| || || || ||| ||||| ||
Sbjct 1574 AAGAAATTGCTGGAAGC-AAGGACACTGTTGGTCAGTACGAGAGTCACACAGCTTTCACA 1632
Query 1749 CT-CCCGGGACTATATAGAGTAGTACACGGCATCGATGTGTTTGATCCGAAGTTCAACAT 1807
|| |||||| |||||| | || || ||||| ||||||||||||||||| |||||||||||
Sbjct 1633 CTTCCCGGG-CTATATCGTGTGGTTCACGGGATCGATGTGTTTGATCCCAAGTTCAACAT 1691
Query 1808 AGTCTCGCCCGGTGCAGACATGACCATATATTTC-CCGTATTCCGAAGAAACTAG-G-AG 1864
||||| || ||||| || |||| |||||| ||| || || | || || | || | ||
Sbjct 1692 TGTCTCTCCTGGTGCGGATATGAGCATATACTTCGCC-TACACTGAGGAGA--AGCGTAG 1748
Query 1865 ACTTA-CAGCTTTACATGGTTCA-ATAGAGGAAATGCTCTATAGCCCTGACCAGA-CTGA 1921
| ||| | || || ||| | || ||||| | ||||| || || ||| | ||
Sbjct 1749 A-TTAACTGCATTCCATCAAG-AGATTGAGGAGCTCCTCTACAGTGATGTTGAGAAC-GA 1805
Query 1922 TGAGCATGTCGGTACACTGA-GTGATCGATCA-AAGCCAATACTCTTCTCTATGGCGAGG 1979
|||| | || || | | || | | | |||||||| |||||| | ||||| |||
Sbjct 1806 AAAGCACCTATGTGTGCTAAAG-GA-CAAGAAGAAGCCAATCCTCTTCACCATGGCTAGG 1863
Query 1980 CTCGACAAAGTGAAGAACATCTCCGGT-TTAGTTGAGATG-TATAGTAAGAACACAAAGT 2037
|| ||| || |||||| | || ||| || |||||| || ||| |||||||||| |
Sbjct 1864 CTTGACCGTGTAAAGAACTTATCAGGTCTT-GTTGAG-TGGTATGGTAAGAACACTC-GC 1920
Query 2038 -TGAGGGAGCTGGTTAATCT-GGTTGTAATAGCTGGTA-ACATTGATGTGAACAAGTC-C 2093
|| | || ||||| || || ||| || | | ||| | ||| || | || | ||| |
Sbjct 1921 CTGCGCGAACTGGTGAA-CTTGGTCGTTGTGGGTGG-AGACAG-GA-GCAAAGA-GTCGC 1975
Query 2094 AAAGATAGA-GAAGAAATCG-TAGAGATTGA-GAAAATGCATAACCTTAT-GAAGAATTA 2149
| || | | ||||||| | | ||||| || ||||||| || | || || || |||| |
Sbjct 1976 AG-GACA-ATGAAGAAAAGGCT-GAGAT-GAAGAAAATGTATGATCTGATTGAGGAAT-A 2030
Query 2150 CAAGCTTGATGGACAGTTTCGTTGGATAACTGCTCA--GACT-AACCGAGCTC-GAAATG 2205
||| ||| | || |||||||| ||||| || |||| || | ||||||| | |||| |
Sbjct 2031 CAAACTTAACGGGCAGTTTCGATGGAT--CTCCTCACAGA-TGAACCGAG-TGAGAAACG 2086
Query 2206 GTGAGCTTTACCGCTACATC-GCGGATAC-AAGAGGTGCTTTTGCT-CAGCCTGCG-TTC 2261
| ||||||||||| ||||| | | | || || |||||| |||| | |||||||| ||
Sbjct 2087 GCGAGCTTTACCGTTACATATGTG-ACACCAA-AGGTGCATTTG-TACAGCCTGCTCTT- 2142
Query 2262 TACGAGGCTTTTGGACTT-ACGGTAGTGGAAGCGATGACTTGCGGGCTCCCGACTTTTGC 2320
|| || || ||||| || || || || || || ||||| || ||| | |||||||| ||
Sbjct 2143 TATGAAGCCTTTGGG-TTGACTGTTGTTGAGGCTATGACCTGTGGGTTACCGACTTTCGC 2201
Query 2321 CACTTGTCAC-GGTGGTCCAGCAGAGATCATCGAGCACGGGCTCTCGGGTTTCCACATCG 2379
||||| || |||||||| || |||||||| | ||| || || ||||||||||| |
Sbjct 2202 TACTTG-CAATGGTGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGTTTCCACATTG 2260
Query 2380 ATCCATACCATCCTGAGCAAGCGGGTAACATAATGGCTGATTTCTTTG--AACGTTGTAA 2437
||||||||||| ||| || || | | | | | ||||||||||| || || ||||
Sbjct 2261 ATCCATACCATGGTGACCAGGCAGCTGAGACGCTTGCTGATTTCTTCACCAA-GT-GTAA 2318
Query 2438 GGAAGATCCAAAC-CATTGGAAGAA-AGTATCAGACGCTGGTCTCCAAAGGATATACGA- 2494
| | || ||| | |||||| | | | | ||| | || || | ||||| | ||
Sbjct 2319 GCATGACCCAT-CTCATTGGGATCAGATT-TCATTGGGAGGACTTGAGAGGATCCAGGAG 2376
Query 2495 AAGGTACACATGG-AAGATATACTCGGAGAGATTGATGACACT-AGCTGGTGTGTATGGT 2552
|| || |||||| || || ||||| ||||| | ||||| | | ||||||| || ||
Sbjct 2377 AAA-TATACATGGCAA-ATTTACTCAGAGAGGCTCTTGACATTGA-CTGGTGTCTACGGC 2433
Query 2553 TTCTGGAAATACGTATCGAAA-TTGGAGCGTCGTGAGACTCGGCGATATCTTGAAATGTT 2611
||||||||| | || ||||| ||| | |||| ||||| ||| ||||| ||||| |||||
Sbjct 2434 TTCTGGAAACATGTCTCGAACCTTG-ACCGTCTTGAGAGTCGTCGATACCTTGAGATGTT 2492
Query 2612 CTAC 2615
||||
Sbjct 2493 CTAC 2496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110118898295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5