BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02405.1
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943492 jgi|Araly1|943492|scaffold_604036.1 1478 0.0
Ahg490329 jgi|Araly1|490329|fgenesh2_kg.6__3463__AT4G02400.1 185 5e-46
> Ahg943492 jgi|Araly1|943492|scaffold_604036.1
Length=1048
Score = 1478 bits (800), Expect = 0.0
Identities = 960/1034 (93%), Gaps = 23/1034 (2%)
Strand=Plus/Plus
Query 1 ATGATCTACTTGAAACCTCTGGTTCCGTCAGAGGTGTTAGCTTCGTCTTCATTCAAAAAG 60
||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 21 ATGATCTACTTGAAACCTCTGCTTCCGTCAGAGGTGTTAGCTTCTTCTTGGTTCAAAAAG 80
Query 61 TCAGCGATATCATTACGGATGCAGAGTCTATGTGCTCCTCCTCCTGTACACTTTCCGGCC 120
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 81 TCAGCGATATCATTACGGATGCAGAGTCTATGTGCTCCTCCT-C--TACACTTTCCGGCC 137
Query 121 ACCGCAATCCGTCGCTGTCGAACTCCGACGCT-CGCCGTTCGTTCCTT---A-C-GAGC- 173
|||||| ||||||| ||||||||||||| | | ||| ||||||||||| | | ||||
Sbjct 138 ACCGCACTCCGTCGTTGTCGAACTCCGA-GGTCCGCAGTTCGTTCCTTACGAGCAGAGCA 196
Query 174 -AGAGAA-TG-A-G--CCTTCGATTCAATCAGCTTTAGTTTCAGCGTCTCATCGTCTGCG 227
|||||| | | | |||| ||||||||||||||||| |||||| |||| |||||||||
Sbjct 197 TAGAGAAGAGAACGACCCTTTGATTCAATCAGCTTTAGATTCAGCATCTCTTCGTCTGCG 256
Query 228 AGAAACCAATCGAACAGAGCCTCTTTTCATCGACCCGTATGCCGCTTGTTTCTTACCTCC 287
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 257 AGAAACCAATCGAACAGAGCCTCTCTTCATCGACCCATATGCCGCTTGTTTCTTACCTCC 316
Query 288 TTACACAAAGAAGGATTTGGACATCC-ATGAACAACAACAACATTACTGTCTTGCAACAA 346
||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||
Sbjct 317 TTACACAAAGAAGGAATTGGACA-CCAATG---AACAACAACATTACTGTCTTGCAACAA 372
Query 347 AGTTCATCGATGATAAGTTGTTAGAAATAGCTAAACGCATTGATGGGCTAAAGCAGGTTG 406
||||||||||||| ||||||||||| ||| ||||||| |||||||| || ||||||||||
Sbjct 373 AGTTCATCGATGACAAGTTGTTAGATATAACTAAACGAATTGATGGACTTAAGCAGGTTG 432
Query 407 TATTGTTCACAGATGGGATGGATACTCGACCTTATAGGCTTAATTGGCCAACTTCCACTA 466
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TCTTGTTCACAGATGGCATGGATACTCGACCTTATAGGCTTAATTGGCCAACTTCCACTA 492
Query 467 TGATCTTTGATGTATCACCGGAAAAAGTTTTCGAAATAGCATCTGAAAAGCTTCAAGGCG 526
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 493 TGATCTTTGATGTATCACCTGAAAAGGTTTTCGAAATAGCATCTGAAAAGCTTCAAGGTG 552
Query 527 TGGGAGCTAGGATCCCTAAAAGTTGCTTATTCTTTCACATTCCCGTGGAATTCGAGAACA 586
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 553 TGGGAGCTAGGATCCCTAAAAGTTGCTTATTCTTTCACATTCCCGTGGAATCCGGGAACA 612
Query 587 TAGAGCAACGTTTACGCTCAAAAGGGTTTAGTGGGAATCGGCCTAGTATATGGGCAATGC 646
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 613 TAGAGCAACGTTTACGATCAAAAGGGTTTAGTGGGAATCGACCAAGTATATGGGCAATGC 672
Query 647 AGGGCTTACCTTTGGAGTCACAATCAGGTTTTGAAGCTATTCTATCGGCCATTAGTAGCT 706
|||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 673 AGGGTTTACCTTACGAGTCACAATCAGGTTTTGAAGCTATTCTATCAGCCATTAGTAGTT 732
Query 707 TGGCCATGAATGAATGCTATCTCATAGGAGAATTGCCTACAAATATAACACTACAGTCGG 766
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 733 TGGCCATGAATGAATGCTATCTCATAGGAGAATTGCCTACAAATATAACACTCCAGTCAG 792
Query 767 ATTTGTCAAAGTGGATGGAGAAACTGTTCATGAGCAATGGTTTTCGGGTGAAAATAGTTA 826
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 793 ATTTGTCAAATTGGATGGACAAACTGTTCATGAGCAATGGTTTTCGGGTGAAAGTAGTTA 852
Query 827 GCTATGAAGAGATTGCTGCAAGTTTAGGTGTGGTATTACATTCACCAGTAAACCATGACA 886
||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||
Sbjct 853 GCTATGAAGAGATTGCTGCGAGTTTAGGTGTTGCATTACCTTCACCAGTAAACCATGACA 912
Query 887 CGGTTCTCTTTATCGCACAACAGCTCAAGTTTTCAGATGATCAGATGGAGACATGGAGAC 946
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 913 CGGTTCTGTTTATCGCACAACAGCTCAAGTTTTCAGATGATCAGATGGAGAAATGGAGAC 972
Query 947 AAGAATTTCAAAGAGTAGAAGAAGATGGAGATGAACAAGGATTTGAAGAGCTCTGA-TGA 1005
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||
Sbjct 973 AAGAATTTCAAAGAGTGGAAGAAGACGGAGATGAACAAGGATTTGAAGAGCTCTGAATGA 1032
Query 1006 AGCAAACAAAATGT 1019
| ||||||||||||
Sbjct 1033 AACAAACAAAATGT 1046
> Ahg490329 jgi|Araly1|490329|fgenesh2_kg.6__3463__AT4G02400.1
Length=2720
Score = 185 bits (100), Expect = 5e-46
Identities = 116/123 (94%), Gaps = 4/123 (3%)
Strand=Plus/Minus
Query 1027 ATAAATAAGACAAATTACAAAGCAAAACTGTTTTCTTTT-GGATCAAAATTTGTGTCTAA 1085
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2720 ATAAATAAGACAAATTACAAAGCAAAACT-TTTTCTTTTCGGATCAAAATTTGTGTCTAA 2662
Query 1086 ACAAGTTTTGAGAATACAGAAATCTTGAGAGCTAAGCTTTGGTCTTTAGCTTGGACTTG- 1144
|||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 2661 ACAAGTTT-GAGAATACAAAAATCTTGGGAGCTAAGCTTTAGTCTTTAGCTTGGACTTGA 2603
Query 1145 TTT 1147
|||
Sbjct 2602 TTT 2600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5