BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02440.1
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490321 jgi|Araly1|490321|fgenesh2_kg.6__3455__AT4G02440.1 1304 0.0
> Ahg490321 jgi|Araly1|490321|fgenesh2_kg.6__3455__AT4G02440.1
Length=1169
Score = 1304 bits (706), Expect = 0.0
Identities = 1057/1209 (87%), Gaps = 94/1209 (8%)
Strand=Plus/Plus
Query 14 CCATAACAGTATAAGTGAATTTGGAT----AAGAAAGGAGCCG--CCTAGAGAGAAG-A- 65
||| |||||||||||||||||||||| |||||||| |||| |||||||||| |
Sbjct 1 CCACAACAGTATAAGTGAATTTGGATAAGAAAGAAAGGGGCCGTTGTTAGAGAGAAGAAG 60
Query 66 AG-GCGATCCATGGCGGAATCTGTCTTCTCTTGTATACCAGAAGACGTAGTCTTCAACAT 124
|| | |||||||||||||||| |||||||||| ||||||| |||||||||||||||||
Sbjct 61 AGAGAGATCCATGGCGGAATCAACCTTCTCTTGTGTACCAGATGACGTAGTCTTCAACAT 120
Query 125 CTTCTTCAAGCTCCAAGATGATCCAAGAAACTGGGCTCGTCTCGCTTGCGTCTGCACCAA 184
|||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||
Sbjct 121 CTTCTTCAAGCTTCAAGACGATCCAAGAAATTGGGCTCGTCTCTCTTGCGTCTGCACCAG 180
Query 185 ATTCTCCTCAATTGTTCGAAACGTTTGTTGTAAAACTCAGTGCTACTCCGCTATCCCCAC 244
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 181 ATTCTCCTCAATTGTACGAAACGTTTGCTGTAAAACACAGTGCTACTCCGCTATCCCCAC 240
Query 245 CGTCATCTCCGATCTCCTCCCTCTTCCTCCCTCCGCCGCCGCATCCGCTTCTTCATCCAC 304
|||||||||||| | || |||| ||| ||| | |||| | |||||
Sbjct 241 CGTCATCTCCGA--T-CT-CCTC--CCT-CCT-----------T---CTTC--C-TCCAC 276
Query 305 CGCGGCGGATTCGTCTCTTACTCCTCCCGGTGGTTGGGCTTCT-TTATACAAACTCGCTG 363
||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||| |
Sbjct 277 CGCGGCGGATTCGTCTCTTCCTCCTCCCGGTGGTTGGGCTTCTCTT-TTCAAACTCGCCG 335
Query 364 TTTGTTGTCCTGGTCTCTTCCACGCTGGAATTCTCCTCGAAAACTCCGATTTCGGTTTAG 423
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 TCTGCTGTCCTGGTCTCTTCCACGCTGGAATTCTCCTCGAAAACTCCGATTTCGGTTTAG 395
Query 424 AACGTGAGCTAGGTCCCGATCAAAACCTCGATCCGAAACCTACTACGACGGATCTAGCTC 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AACGTGAGCTAGGTCCCGATCAAAACCTCGATCCGAAACCTACTACGACGGATCTAGCTA 455
Query 484 TTAACGACGAAGAAGTTTCGAAACCAGTTGGATCTGGTTTAGAAACGACTTCGTTTTGGT 543
| |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 456 GTGACGACGGAGAAGTTTGGAAACCAGTCGGATCTGGTTTAGAAACGACTTCGTTTTGGT 515
Query 544 CTCTATATGATGATCTCTACACAGATACTATTCCCGCTCCTCCTCCCGAAGATTCAATCG 603
|||| ||||| ||||||||||| ||||||||||||||||||| || ||||| |||||
Sbjct 516 CTCTGTATGACGATCTCTACACCGATACTATTCCCGCTCCTC-TC--GAAGA---AATCG 569
Query 604 ACGATCAAGAAGAAGAAATCGAAACGAGTGAGATCAGACCTGGACGAGATCTTCCGGTAA 663
| || | || | | || || | |||||||||| |||||||||||||||
Sbjct 570 A-GA-C--GA-G------T-GA---GA-T-----CAGACCTGGAAGAGATCTTCCGGTAA 608
Query 664 GGAAACGAAGGAAGATTTGTCGATCTCTAGGATCTCATTTAGCTTCCGGTGGCTGGAACC 723
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |
Sbjct 609 GGAAACGAAGGAAGATTTGTAGATCTTTAGGATCTCATATAGCTTCCGGTGGCTGGAATC 668
Query 724 TTAGCCGTGAACAAGGCAACAAGCTTCTCGCGAGTAGATTCCGAGGTGATTGTCTCTACA 783
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 669 TTAGCCGTGAACAAGGCAACAAGCTTCTGGCGAGTAGATTTCGAGGTGATTGTCTCTACA 728
Query 784 TTTGCAATTGGCCTGGGTGTATTCACGTAGAAGAGAAACGAAATTACATGTTGTTTAGAG 843
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 729 TTTGCAATTGGCCTGGATGTATTCACGTTGAAGAGAAACGAAATTACATGTTGTTTAGAG 788
Query 844 GAGTCTTCAAGGATTTCAAAAGGTCTAGAGTTTGGAGAACGATAAACGACGGTAATC--- 900
| || ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 789 GTGTTTTCAAGGATTTCAAACGGTCTCGAGTTTGGAGAACGATAAATGACGGTAATCATC 848
Query 901 GGAGTAAGACCTCGGGTTTGAAATGCGCGTTTTGTTTGTGCGATGAGACTTGGGATTTGC 960
||||||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 849 GGAGTAAGATCTCGGGGCTGAAATGCGCCTTTTGTTTGTGCCATGAGACTTGGGATTTGC 908
Query 961 ATTCATCGTTTTGTTTGAGAAGAGTGTTTGGGTTTCATGATGATGGTGAACCAGTTGTGA 1020
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 909 ATTCATCGTTTTGTTTGAGAAGAGTCTTTGGGTTTCATGATGATGGTGAACCAGTTGTGA 968
Query 1021 GAGCTTATGTTTGTGAGAATGGTCATGTCTCTGGTGCTTGGACTGCTTTACCTCTCTACA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GAGCTTATGTTTGTGAGAATGGTCATGTCTCTGGTGCTTGGACTGCTTTACCTCTCTACA 1028
Query 1081 CTTGATAGCTCACTAGAGAGGACAGGTCTTTCATTCTTCTTCCACGGTCTCAAGTCT-CA 1139
||||| | | ||| | | | ||| |||||||||| ||||||| |||||| ||
Sbjct 1029 CTTGA--G---A---GAG-GC-C---T-TTTGATTCTTCTTCTACGGTCTAAAGTCTTCA 1074
Query 1140 ATCTTGTTTG-ATGTATTTGTAGGAATAGTGTCATTGTGTTTCAAATTCTGGTTAATGTT 1198
||||||||| || | || |||||||| || | || | ||| ||||||||||||||
Sbjct 1075 -TCTTGTTTGGAT-T-TT-GTAGGAATCGT-T--TT-T----CAA-TTCTGGTTAATGTT 1121
Query 1199 TAAGTAATG 1207
||| |||||
Sbjct 1122 TAACTAATG 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48568596258
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5