BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02520.1 Length=989 Score E Sequences producing significant alignments: (Bits) Value Ahg490313 jgi|Araly1|490313|fgenesh2_kg.6__3447__AT4G02520.1 1465 0.0 Ahg484202 jgi|Araly1|484202|fgenesh2_kg.5__194__AT4G02520.1 1096 0.0 > Ahg490313 jgi|Araly1|490313|fgenesh2_kg.6__3447__AT4G02520.1 Length=966 Score = 1465 bits (793), Expect = 0.0 Identities = 928/989 (94%), Gaps = 26/989 (3%) Strand=Plus/Plus Query 1 TTCTGTATAAATACCTTCATTACTTGTGTCTTATTTCATCACCTTCACCTTCAACATCAA 60 |||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 1 TTCTGTATAAATTCCATCACTACTTGTGTCTTATTTCACCACCTTCACCTTCAACATCAA 60 Query 61 ACATCACAtttcttcctcttttctctcttttttctcAGTCTTCAAAGAGTTTCTTAGTAA 120 |||||||| |||| || ||||||||||||||||||||||||||| Sbjct 61 ACATCACA---------------TCTC---TTACTCAGTCTTCAAAGAGTTTCTTAGTAA 102 Query 121 CCCAAATCAATGGCAGGTATCAAAGTTTTCGGACACCCAGCTTCCATTGCCACCAGGAGA 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103 -CCAAATCAATGGCAGGTATCAAAGTTTTCGGACACCCAGCTTCCATTGCCACCAGGAGA 161 Query 181 GTCCTCATCGCCCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCATGTCGAACTCAAA 240 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 162 GTCCTCATCGCCCTCCACGAGAAGAACCTCGACTTTGAGCTCGTTCATATCGAACTCAAA 221 Query 241 GACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGTCAGGTTCCAGCC 300 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 222 GACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGACAAGTTCCAGCC 281 Query 301 TTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTACATAGCTCAC 360 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TTTGAAGATGGAGACGTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTACATAGCTCAC 341 Query 361 CGA-TATGAAAACCAAGGAACCAACCTTCTCCAAACCGACTCCAAGAACATATCTCAGTA 419 | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 342 C-AGTATGAAAACCAAGGAACCAACCTTCTCCAAGCCGACTCCAAGAACATATCTCAGTA 400 Query 420 CGCAATCATGGCCATTGGAATGCAAGTAGAAGATCACCAGTTCGACCCAGTGGCTTCAAA 479 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 401 CGCAATCATGGCCATTGGAATGCAAGTAGAAGCTCATCAGTTCGACCCAGTGGCTTCAAA 460 Query 480 GCTTGCTTTTGAACAAATATTCAAGTCCATCTACGGCTTGACCACAGACGAAGCCGTTGT 539 |||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 461 GCTTGCTTGGGAACAATTATTCAAGTCCATCTACGGCTTGACCACAGACCAAGCCGTTGT 520 Query 540 TGCAGAAGAGGAGGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAGGCTAGGCTCAAGGA 599 ||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 521 TGCAGAAGAAGAAGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAGGCTAGGTTGAAGGA 580 Query 600 GTTCAAGTATTTGGCTGGTGAAACTTTCACTTTGACTGATCTTCACCACATTCCCGCGAT 659 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 581 GTTCAAGTACTTGGCTGGTGACACTTTCACTTTGACTGATCTTCACCACATTCCCGCGAT 640 Query 660 TCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGTCCACGTGTCAATGA 719 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 641 TCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGTCCACGTGTCAACGA 700 Query 720 GTGGGTGGCTGAAATCACCAAGAGGCCAGCTTCCGAGAAGGTTCAGTGAGAAATTTCTAA 779 |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 701 GTGGGTGGCTGAGATCACCAAGAGGCCAGCTTCAGAGAAGGTTCTGTGAGAAATTTCTAA 760 Query 780 AAGGAAAATATGGTTTTGCTTCAGTCACAGTAATAATGCT-AAGATTAAATAAGCGGCTT 838 |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 761 AAGGAAAAAATGGTTTTGCTTCAGTCACAGTAATAATGCTTAA-ATTAAATAAGCGGCTA 819 Query 839 TCTCATTGCCCAATTTCTCAGTACTTTCTTTCTGTTGTATCCTCTGTTTTC-TTTCAGTT 897 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 820 CCTCATTGCCCAATTTCTCAGTATTTTCTTTCTGTTGTATCCTCTGTTTTTGTTTCAGTT 879 Query 898 ATGTGAGTGTGTGTGTATGCTCTTGAGAGTATCTTTGGCAAAAACTATTTATCTAATCTT 957 |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 880 ATGTGAGTGTGTGT--ATGTTCTTGAGAGTATCTTTGGCAAAAACTATTTATATAATCTT 937 Query 958 CAAGCTATTCTAAAATAAATCAATTAGTT 986 |||||| |||||||||||||||||||||| Sbjct 938 CAAGCTCTTCTAAAATAAATCAATTAGTT 966 > Ahg484202 jgi|Araly1|484202|fgenesh2_kg.5__194__AT4G02520.1 Length=931 Score = 1096 bits (593), Expect = 0.0 Identities = 690/736 (94%), Gaps = 10/736 (1%) Strand=Plus/Plus Query 50 TTCAACATCAAACATCACAtttcttcctcttttctctcttttttctcAGTCTTCAAAGAG 109 |||||||||| ||||||||| |||| ||||||| |||| |||||||| |||||||||||| Sbjct 35 TTCAACATCAGACATCACATCTCTTACTCTTTTGTCTC-TTTTTCTCGGTCTTCAAAGAG 93 Query 110 TTTCTTAGTAACCCAAATCAATGGCAGGTATCAAAGTTTTCGG-ACACCCAGCTTCCA-T 167 ||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||| | Sbjct 94 TTTCTTAGTAA-CCAACTCAATGGCAGGTATCAAAGTTTTCGGAAC-CCCAGCTTCCACT 151 Query 168 TGCCACCAGGAGAGTCCTCATCGCCCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCA 227 | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 152 T-CAACCAGGAGAGTCCTCATCGCTCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCA 210 Query 228 TGTCGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGG 287 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 211 TGTTGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGG 270 Query 288 TCAGGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCA 347 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 TCAAGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCA 330 Query 348 GTACATAGCTCACCGATATGAAAACCAAGGAACCAACCTTCTCCAAACCGACTCCAAGAA 407 |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| Sbjct 331 GTACATAGCTCACCGATACGAAAACCAAGGAACCAACCTTCTCCAAGCTGACTCCAAGAA 390 Query 408 CATATCTCAGTACGCAATCATGGCCATTGGAATGCAAGTAGAAGATCACCAGTTCGA-CC 466 |||| ||||||| |||||||||||||||||| || ||||||||| ||| |||||||| || Sbjct 391 CATAGCTCAGTATGCAATCATGGCCATTGGACTGGAAGTAGAAGCTCATCAGTTCGATCC 450 Query 467 CAGTGGCTTCAAAGCTTGCTTTTGAACAAATATTCAAG-TCCATCTACGGCTTGACCACA 525 | ||||||||||||||||||| |||||| ||| |||| || ||||| |||||||||||| Sbjct 451 C-GTGGCTTCAAAGCTTGCTTGGGAACAAGTATACAAGCTC-ATCTATGGCTTGACCACA 508 Query 526 GACGAAGCCGTTGTTGCAGAAGAGGAGGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAG 585 ||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 509 GACCAAGCCGTTGTTGCAGAAGAAGAAGCTAAGTTGGCCAAGGTCCTTGATGTCTACGAG 568 Query 586 GCTAGGCTCAAGGAGTTCAAGTATTTGGCTGGTGAAACTTTCACTTTGACTGATCTTCAC 645 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 569 GCTAGGCTCAAGGAGTTCAAGTATTTGGCTGGTGACACTTTCACTTTGACCGATCTTCAC 628 Query 646 CACATTCCCGCGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGT 705 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 629 CACATTCCCGTGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGT 688 Query 706 CCACGTGTCAATGAGTGGGTGGCTGAAATCACCAAGAGGCCAGCTTCCGAGAAGGTTCAG 765 ||||||||||| |||||||| ||||| |||||||| |||||||||||| ||||||||||| Sbjct 689 CCACGTGTCAACGAGTGGGTCGCTGAGATCACCAACAGGCCAGCTTCCCAGAAGGTTCAG 748 Query 766 TGAGAAATTTCTAAAA 781 |||||||||||||||| Sbjct 749 TGAGAAATTTCTAAAA 764 Score = 206 bits (111), Expect = 3e-52 Identities = 156/176 (89%), Gaps = 10/176 (6%) Strand=Plus/Plus Query 818 CTAAGATTAAATAAGCGGCTTTCTCATTGCCCAATTTCTCAGTACTTTC-----TTTCTG 872 |||| |||||| |||||||| ||||||| || | ||||||||||||| |||||| Sbjct 759 CTAAAATTAAACAAGCGGCTGCCTCATTGTCC-A--TCTCAGTACTTTCTTTAATTTCTG 815 Query 873 TTGTATCCTCTG-TTTTCTTTCAGTTATGTGAGTGTGTGT-GTATGCTCTTGAGAGTATC 930 |||||||||||| |||| | |||||||||||||||||||| ||||| ||||||||||||| Sbjct 816 TTGTATCCTCTGTTTTTGTATCAGTTATGTGAGTGTGTGTCGTATGTTCTTGAGAGTATC 875 Query 931 TTTGGCAAAAACTATTTATCTAATCTTCAAGCTATTCTAAAATAAATCAATTAGTT 986 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 876 TTTGGCAAAAACTATTTATATAATCTTCAAGCTCTTCTAAAATAAATCAATTAGTT 931 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36750491988 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5